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added_tokens.json

@@ -0,0 +1,8 @@
+{
+  "</SEQ>": 34,
+  "</SMILES>": 32,
+  "<SEQ>": 33,
+  "<SMILES>": 31,
+  "<|endoftext|>": 30,
+  "[PAD]": 35
+}

config.json

@@ -0,0 +1,46 @@
+{
+  "activation_function": "gelu_new",
+  "architectures": [
+    "ProGenForCausalLM"
+  ],
+  "attn_pdrop": 0.0,
+  "auto_map": {
+    "AutoConfig": "hugohrban/progen2-small--configuration_progen.ProGenConfig",
+    "AutoModelForCausalLM": "hugohrban/progen2-small--modeling_progen.ProGenForCausalLM"
+  },
+  "bos_token_id": 1,
+  "embd_pdrop": 0.0,
+  "embed_dim": 1024,
+  "eos_token_id": 2,
+  "gradient_checkpointing": false,
+  "initializer_range": 0.02,
+  "layer_norm_epsilon": 1e-05,
+  "model_type": "progen",
+  "n_embd": 1024,
+  "n_head": 16,
+  "n_inner": null,
+  "n_layer": 12,
+  "n_positions": 1024,
+  "resid_pdrop": 0.0,
+  "rotary_dim": 32,
+  "scale_attn_weights": true,
+  "summary_activation": null,
+  "summary_first_dropout": 0.1,
+  "summary_proj_to_labels": true,
+  "summary_type": "cls_index",
+  "summary_use_proj": true,
+  "task_specific_params": {
+    "text-generation": {
+      "do_sample": true,
+      "max_length": 50,
+      "temperature": 1.0
+    }
+  },
+  "tokenizer_class": "GPT2Tokenizer",
+  "torch_dtype": "float32",
+  "transformers_version": "4.51.3",
+  "use_cache": true,
+  "vocab_size": 32,
+  "vocab_size_emb": 32,
+  "vocab_size_lm_head": 32
+}

generation_config.json

@@ -0,0 +1,6 @@
+{
+  "_from_model_config": true,
+  "bos_token_id": 1,
+  "eos_token_id": 2,
+  "transformers_version": "4.51.3"
+}

merges.txt

@@ -0,0 +1 @@
+#version: 0.2

pytorch_model.bin

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+version https://git-lfs.github.com/spec/v1
+oid sha256:391873f7bd3f2fd90e1b32839b1ff568cf27ea009815c8ba2d3c4c1c376bcd0d
+size 604510743

special_tokens_map.json

@@ -0,0 +1,42 @@
+{
+  "additional_special_tokens": [
+    {
+      "content": "<SMILES>",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false
+    },
+    {
+      "content": "</SMILES>",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false
+    },
+    {
+      "content": "<SEQ>",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false
+    },
+    {
+      "content": "</SEQ>",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false
+    }
+  ],
+  "bos_token": "<|endoftext|>",
+  "eos_token": "<|endoftext|>",
+  "pad_token": {
+    "content": "[PAD]",
+    "lstrip": false,
+    "normalized": false,
+    "rstrip": false,
+    "single_word": false
+  },
+  "unk_token": "<|endoftext|>"
+}

tokenizer.json

@@ -0,0 +1,164 @@
+{
+  "version": "1.0",
+  "truncation": {
+    "direction": "Right",
+    "max_length": 512,
+    "strategy": "LongestFirst",
+    "stride": 0
+  },
+  "padding": {
+    "strategy": {
+      "Fixed": 512
+    },
+    "direction": "Right",
+    "pad_to_multiple_of": null,
+    "pad_id": 35,
+    "pad_type_id": 0,
+    "pad_token": "[PAD]"
+  },
+  "added_tokens": [
+    {
+      "id": 0,
+      "content": "<|pad|>",
+      "single_word": false,
+      "lstrip": false,
+      "rstrip": false,
+      "normalized": false,
+      "special": true
+    },
+    {
+      "id": 1,
+      "content": "<|bos|>",
+      "single_word": false,
+      "lstrip": false,
+      "rstrip": false,
+      "normalized": false,
+      "special": true
+    },
+    {
+      "id": 2,
+      "content": "<|eos|>",
+      "single_word": false,
+      "lstrip": false,
+      "rstrip": false,
+      "normalized": false,
+      "special": true
+    },
+    {
+      "id": 30,
+      "content": "<|endoftext|>",
+      "single_word": false,
+      "lstrip": false,
+      "rstrip": false,
+      "normalized": false,
+      "special": true
+    },
+    {
+      "id": 31,
+      "content": "<SMILES>",
+      "single_word": false,
+      "lstrip": false,
+      "rstrip": false,
+      "normalized": false,
+      "special": true
+    },
+    {
+      "id": 32,
+      "content": "</SMILES>",
+      "single_word": false,
+      "lstrip": false,
+      "rstrip": false,
+      "normalized": false,
+      "special": true
+    },
+    {
+      "id": 33,
+      "content": "<SEQ>",
+      "single_word": false,
+      "lstrip": false,
+      "rstrip": false,
+      "normalized": false,
+      "special": true
+    },
+    {
+      "id": 34,
+      "content": "</SEQ>",
+      "single_word": false,
+      "lstrip": false,
+      "rstrip": false,
+      "normalized": false,
+      "special": true
+    },
+    {
+      "id": 35,
+      "content": "[PAD]",
+      "single_word": false,
+      "lstrip": false,
+      "rstrip": false,
+      "normalized": false,
+      "special": true
+    }
+  ],
+  "normalizer": null,
+  "pre_tokenizer": {
+    "type": "ByteLevel",
+    "add_prefix_space": false,
+    "trim_offsets": true,
+    "use_regex": true
+  },
+  "post_processor": {
+    "type": "ByteLevel",
+    "add_prefix_space": true,
+    "trim_offsets": true,
+    "use_regex": true
+  },
+  "decoder": {
+    "type": "ByteLevel",
+    "add_prefix_space": true,
+    "trim_offsets": true,
+    "use_regex": true
+  },
+  "model": {
+    "type": "BPE",
+    "dropout": null,
+    "unk_token": null,
+    "continuing_subword_prefix": null,
+    "end_of_word_suffix": null,
+    "fuse_unk": false,
+    "byte_fallback": false,
+    "ignore_merges": false,
+    "vocab": {
+      "<|pad|>": 0,
+      "<|bos|>": 1,
+      "<|eos|>": 2,
+      "1": 3,
+      "2": 4,
+      "A": 5,
+      "B": 6,
+      "C": 7,
+      "D": 8,
+      "E": 9,
+      "F": 10,
+      "G": 11,
+      "H": 12,
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+      "K": 14,
+      "L": 15,
+      "M": 16,
+      "N": 17,
+      "O": 18,
+      "P": 19,
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+      "R": 21,
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+      "U": 24,
+      "V": 25,
+      "W": 26,
+      "X": 27,
+      "Y": 28,
+      "Z": 29
+    },
+    "merges": []
+  }
+}

tokenizer_config.json

@@ -0,0 +1,91 @@
+{
+  "add_prefix_space": false,
+  "added_tokens_decoder": {
+    "0": {
+      "content": "<|pad|>",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
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+      "content": "<|bos|>",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    },
+    "2": {
+      "content": "<|eos|>",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    },
+    "30": {
+      "content": "<|endoftext|>",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    },
+    "31": {
+      "content": "<SMILES>",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    },
+    "32": {
+      "content": "</SMILES>",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    },
+    "33": {
+      "content": "<SEQ>",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    },
+    "34": {
+      "content": "</SEQ>",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    },
+    "35": {
+      "content": "[PAD]",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    }
+  },
+  "additional_special_tokens": [
+    "<SMILES>",
+    "</SMILES>",
+    "<SEQ>",
+    "</SEQ>"
+  ],
+  "bos_token": "<|endoftext|>",
+  "clean_up_tokenization_spaces": false,
+  "eos_token": "<|endoftext|>",
+  "extra_special_tokens": {},
+  "model_max_length": 1000000000000000019884624838656,
+  "pad_token": "[PAD]",
+  "tokenizer_class": "GPT2Tokenizer",
+  "unk_token": "<|endoftext|>"
+}

vocab.json

@@ -0,0 +1 @@
+{"<|pad|>":0,"<|bos|>":1,"<|eos|>":2,"1":3,"2":4,"A":5,"B":6,"C":7,"D":8,"E":9,"F":10,"G":11,"H":12,"I":13,"K":14,"L":15,"M":16,"N":17,"O":18,"P":19,"Q":20,"R":21,"S":22,"T":23,"U":24,"V":25,"W":26,"X":27,"Y":28,"Z":29}