File size: 926 Bytes
a9cc132 13f621f 5b472c8 a9cc132 a808315 a9cc132 a808315 a9cc132 48c9174 a9cc132 4c97aaf a9cc132 13f621f |
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 |
---
license: apache-2.0
tags:
- LucaOne
- Biological Foundation Model
- Unified Nucleic Acid and Protein Language Model
- Biology
- AI4Science
- AI4Biology
- Bio
language:
- en
---
# LucaGPLM
LucaGPLM - The LUCA general purpose language model.
## Installation
You can install the package from source using pip:
```bash
pip install tokenizers==0.19.1
pip install transformers==4.41.2
pip install lucagplm
```
## Usage
```python
from lucagplm import LucaGPLMModel, LucaGPLMTokenizer
# Load model
model = LucaGPLMModel.from_pretrained("LucaGroup/LucaOne-default-step17.6M")
tokenizer = LucaGPLMTokenizer.from_pretrained("LucaGroup/LucaOne-default-step17.6M")
# Example usage
seq = "ATCG"
inputs = tokenizer(seq, seq_type="gene",return_tensors="pt")
outputs = model(**inputs)
seq = "NSQTA"
inputs = tokenizer(seq, seq_type="prot",return_tensors="pt")
outputs = model(**inputs)
print(outputs.last_hidden_state.shape)
``` |