lhallee commited on
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1 Parent(s): fb8fbde

Upload modeling_fastesm.py with huggingface_hub

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  1. modeling_fastesm.py +5 -1
modeling_fastesm.py CHANGED
@@ -1747,13 +1747,14 @@ class FastEsmModel(FastEsmPreTrainedModel, EmbeddingMixin):
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  )
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- class FastEsmForMaskedLM(FastEsmPreTrainedModel, EmbeddingMixin):
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  def __init__(self, config, **kwargs):
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  FastEsmPreTrainedModel.__init__(self, config, **kwargs)
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  self.esm = FAST_ESM_ENCODER(config, add_pooling_layer=False)
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  self.lm_head = EsmLMHead(config)
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  self.loss_fct = nn.CrossEntropyLoss()
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  self.post_init()
 
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  def get_input_embeddings(self):
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  return self.esm.embeddings.word_embeddings
@@ -1781,6 +1782,9 @@ class FastEsmForMaskedLM(FastEsmPreTrainedModel, EmbeddingMixin):
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  def predict_contacts(self, input_ids: torch.Tensor, attention_mask: torch.Tensor) -> torch.Tensor:
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  return self.esm.predict_contacts(input_ids, attention_mask=attention_mask)
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  def forward(
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  self,
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  input_ids: Optional[torch.Tensor] = None,
 
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  )
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+ class FastEsmForMaskedLM(FastPLMTestTimeTrainingMixin, FastEsmPreTrainedModel, EmbeddingMixin):
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  def __init__(self, config, **kwargs):
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  FastEsmPreTrainedModel.__init__(self, config, **kwargs)
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  self.esm = FAST_ESM_ENCODER(config, add_pooling_layer=False)
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  self.lm_head = EsmLMHead(config)
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  self.loss_fct = nn.CrossEntropyLoss()
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  self.post_init()
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+ self.init_ttt({"lora_target_replace_module": "EsmAttention"})
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  def get_input_embeddings(self):
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  return self.esm.embeddings.word_embeddings
 
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  def predict_contacts(self, input_ids: torch.Tensor, attention_mask: torch.Tensor) -> torch.Tensor:
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  return self.esm.predict_contacts(input_ids, attention_mask=attention_mask)
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+ def _ttt_get_trainable_modules(self) -> list[nn.Module]:
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+ return [self.esm]
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+
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  def forward(
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  self,
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  input_ids: Optional[torch.Tensor] = None,