Geneformer / geneformer /classifier.py

Commit History

move V1 autoformatting to after validate_options
4364d31

Christina Theodoris commited on

add option for relabeling data from prior label class dict, update dict paths in manifest
76a78a0

Christina Theodoris commited on

update with V2 models
d319fef

Christina Theodoris commited on

fix TypeError: TrainingArguments.__init__() got an unexpected keyword argument 'evaluation_strategy' (#539)
42dbf0a
verified

ctheodoris jackkuo commited on

update eval_strategy for new transformers version
18a2ca6

Christina Theodoris commited on

Prepare data cell level pass cell state dict instead of genes (#483)
69e6887
verified

ctheodoris hchen725 commited on

sync token_dictionary variable name w/ classifier
a021deb
verified

ctheodoris commited on

precommit formatting
f07bfd7

ctheodoris commited on

update with 12L and 20L i4096 gc95M models, multitask and quantiz code
933ca80

ctheodoris commited on

move dicts to init
ea428cb

ctheodoris commited on

patch datasets save_to_disk
75c67a1

Christina Theodoris commited on

refer to token dictionary in self
86fe0dd

Christina Theodoris commited on

Update with gene classifier, custom token dict, and str validate options (#329)
0568479
verified

ctheodoris hchen725 commited on

add option for hyperparameter tuning to cc.validate
4bddd45

Christina Theodoris commited on

update examples for predict_eval and handle roc for 2 cell classes
eeba323

Christina Theodoris commited on

Update readthedocs for classifier
f75f5ac

Christina Theodoris commited on

Add classifier module and examples
9e9cca9

Christina Theodoris commited on