Geneformer / geneformer /perturber_utils.py

Commit History

fix to properly move model after checking device
f953554

Christina Theodoris commited on

move model to device after checking
efc403d

Christina Theodoris commited on

add option for relabeling data from prior label class dict, update dict paths in manifest
76a78a0

Christina Theodoris commited on

update with V2 models
d319fef

Christina Theodoris commited on

add fallback task_type for LoraConfig to support different PEFT versions (#538)
d471d1b
verified

ctheodoris madhavanvvs commited on

edit imports in perturber_utils
c6d04a6

Christina Theodoris commited on

add quantization for pretrained model
7b591f6

Christina Theodoris commited on

CUDA kernels incompatible with standard PyTorch device movement with 4bit/8bit, necessitating device-specific handling (#416)
b6d28c3
verified

ctheodoris madhavanvenkatesh commited on

precommit formatting
f07bfd7

ctheodoris commited on

update with 12L and 20L i4096 gc95M models, multitask and quantiz code
933ca80

ctheodoris commited on

move dicts to init
ea428cb

ctheodoris commited on

fix cell state gene embeddings bug (#345)
c0e7b19
verified

ctheodoris commited on

add load model for train and fix validate anchor gene error
0d675a3

Christina Theodoris commited on

update dependencies, reinstate compatibility with python<3.9 with typing for List
10d3f10

Christina Theodoris commited on

Add functions for extracting gene embeddings, move state_embs_dict outside isp, fix bugs in isp
2f25aea

Christina Theodoris commited on