Geneformer / geneformer

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17 contributors

History: 148 commits

Christina Theodoris

add V2 models

7cf49a3 22 days ago

gene_dictionaries_30m
Update geneformer/tokenizer.py (#415) 10 months ago
mtl
move import wandb to conditional about 2 months ago
__init__.py

1.65 kB

update with V2 models 22 days ago
classifier.py

66 kB

update with V2 models 22 days ago
classifier_utils.py

23.5 kB

ensure gene class dict only inverted when using gene classifier 5 months ago
collator_for_classification.py

31.2 kB

Refactor: Convert mask_token_id, pad_token_id, and all_special_ids to properties (#395) 11 months ago
emb_extractor.py

33.1 kB

update with V2 models 22 days ago
ensembl_mapping_dict_gc104M.pkl
Pickle imports
- No problematic imports detected
What is a pickle import?
3.96 MB
LFS

add V2 models 22 days ago
evaluation_utils.py

9.87 kB

update with V2 models 22 days ago
gene_median_dictionary_gc104M.pkl
Detected Pickle imports (2)
- "numpy.core.multiarray.scalar",
- "numpy.dtype"
How to fix it?
1.51 MB
LFS

add V2 models 22 days ago
gene_name_id_dict_gc104M.pkl
Pickle imports
- No problematic imports detected
What is a pickle import?
1.66 MB
LFS

add V2 models 22 days ago
in_silico_perturber.py

67.5 kB

update with V2 models 22 days ago
in_silico_perturber_stats.py

45.7 kB

update with V2 models 22 days ago
mtl_classifier.py

14.5 kB

fully qualified imports to resolve name-space conflicts (#532) about 2 months ago
perturber_utils.py

31.8 kB

update with V2 models 22 days ago
pretrainer.py

29.5 kB

remove unused imports while no longer using distributed sampler 7 months ago
token_dictionary_gc104M.pkl
Pickle imports
- No problematic imports detected
What is a pickle import?
426 kB
LFS

add V2 models 22 days ago
tokenizer.py

30.7 kB

update with V2 models 22 days ago

Pickle imports

Detected Pickle imports (2)

Pickle imports

Pickle imports