Geneformer / geneformer

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17 contributors

History: 70 commits

ctheodoris

Get the gene keys and gene list keys from the token dictionary instead of medians (#304)

b294421 verified over 1 year ago

__init__.py

646 Bytes

Prevent ruff/isort on init over 1 year ago
classifier.py

49.9 kB

Add classifier module and examples over 1 year ago
classifier_utils.py

14.8 kB

Add classifier module and examples over 1 year ago
collator_for_classification.py

29.8 kB

Subclass collator for cell classification about 2 years ago
emb_extractor.py

29.3 kB

Add classifier module and examples over 1 year ago
evaluation_utils.py

9.76 kB

Add classifier module and examples over 1 year ago
gene_median_dictionary.pkl
Detected Pickle imports (2)
- "numpy.dtype",
- "numpy.core.multiarray.scalar"
How to fix it?
941 kB

Add Geneformer tokenizer and updated model card almost 3 years ago
gene_name_id_dict.pkl
Pickle imports
- No problematic imports detected
What is a pickle import?
1.12 MB
LFS

Upload gene_name_id_dict.pkl (#14) about 2 years ago
in_silico_perturber.py

38.7 kB

add load model for train and fix validate anchor gene error over 1 year ago
in_silico_perturber_stats.py

43.2 kB

Add classifier module and examples over 1 year ago
perturber_utils.py

24.9 kB

add load model for train and fix validate anchor gene error over 1 year ago
pretrainer.py

37 kB

fix: incorrect condition control flow (#261) over 1 year ago
token_dictionary.pkl
Detected Pickle imports (2)
- "numpy.dtype",
- "numpy.core.multiarray.scalar"
How to fix it?
788 kB

Update token_dictionary.pkl about 2 years ago
tokenizer.py

16.5 kB

Get the gene keys and gene list keys from the token dictionary instead of medians (#304) over 1 year ago

Detected Pickle imports (2)

Pickle imports

Detected Pickle imports (2)