Geneformer / geneformer

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17 contributors

History: 157 commits

Christina Theodoris

plot umap for all labels in same view

ff551ee 12 days ago

gene_dictionaries_30m
Update geneformer/tokenizer.py (#415) 10 months ago
mtl
move import wandb to conditional about 2 months ago
__init__.py

1.65 kB

update with V2 models 21 days ago
classifier.py

66.6 kB

move V1 autoformatting to after validate_options 14 days ago
classifier_utils.py

23.6 kB

add option for relabeling data from prior label class dict, update dict paths in manifest 15 days ago
collator_for_classification.py

31.7 kB

silence tensor copy warning 13 days ago
emb_extractor.py

33.3 kB

plot umap for all labels in same view 12 days ago
ensembl_mapping_dict_gc104M.pkl
Pickle imports
- No problematic imports detected
What is a pickle import?
3.96 MB
LFS

add V2 models 21 days ago
evaluation_utils.py

9.87 kB

update with V2 models 21 days ago
gene_median_dictionary_gc104M.pkl
Detected Pickle imports (2)
- "numpy.core.multiarray.scalar",
- "numpy.dtype"
How to fix it?
1.51 MB
LFS

add V2 models 21 days ago
gene_name_id_dict_gc104M.pkl
Pickle imports
- No problematic imports detected
What is a pickle import?
1.66 MB
LFS

add V2 models 21 days ago
in_silico_perturber.py

67.5 kB

update V1 token dict usage to self attr 14 days ago
in_silico_perturber_stats.py

45.7 kB

update with V2 models 21 days ago
mtl_classifier.py

14.5 kB

fully qualified imports to resolve name-space conflicts (#532) about 2 months ago
perturber_utils.py

32.1 kB

fix to properly move model after checking device 14 days ago
pretrainer.py

29.5 kB

remove unused imports while no longer using distributed sampler 7 months ago
token_dictionary_gc104M.pkl
Pickle imports
- No problematic imports detected
What is a pickle import?
426 kB
LFS

add V2 models 21 days ago
tokenizer.py

30.7 kB

update with V2 models 21 days ago

Pickle imports

Detected Pickle imports (2)

Pickle imports

Pickle imports