Create make_summarization_csv.py

make_summarization_csv.py

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+import re
+import os
+import logging
+import pickle
+import argparse
+
+import numpy as np
+import pandas as pd
+
+from tqdm import tqdm
+
+
+def make_summarization_csv(args):
+    if args.for_qfid:
+        logging.info('Making csv files for QFiD...')
+        logging.info('Columns={"reference": literature review title <s> chapter title </s> literature review title <s> chapter title <s> abstract of cited paper 1 <s> BIB001 </s> literature review title <s> chapter title <s> abstract of cited paper 2 <s> BIB002 </s> ..., "target": literature review chapter}')
+    else:
+        logging.info('Making csv files for summarization...')
+        logging.info('Columns={"reference": literature review title <s> chapter title <s> abstract of cited paper 1 <s> BIB001 </s> literature review title <s> chapter title <s> abstract of cited paper 2 <s> BIB002 </s> ..., "target": literature review chapter}')
+    section_df = pd.read_pickle(os.path.join(args.dataset_path, 'split_survey_df.pkl'))
+
+    dataset_df = section_df[section_df['n_bibs'].apply(lambda n_bibs: n_bibs >= 2)]
+
+    dataset_df = dataset_df.rename(columns={'text': 'target'})
+    dataset_df = dataset_df.rename(columns={'bib_cinting_sentences': 'bib_citing_sentences'})
+
+    dataset_df['reference'] = dataset_df[['bib_abstracts', 'section', 'title']].apply(lambda bib_abstracts: ' '.join(['</s> {} <s> {} <s> {} <s> BIB{}'.format(bib_abstracts[2], bib_abstracts[1], abstract, bib) for bib, abstract in bib_abstracts[0].items()]), axis=1)
+    if args.for_qfid:
+        dataset_df['reference'] = dataset_df['title'] + ' <s> ' + dataset_df['section'] + ' ' + dataset_df['reference']
+    else:
+        dataset_df['reference'] = dataset_df['reference'].apply(lambda s: s[5:])
+
+    split_df = dataset_df['split']
+    dataset_df = dataset_df[['reference', 'target']]
+
+    train_df = dataset_df[split_df == 'train']
+    val_df = dataset_df[split_df == 'val']
+    test_df = dataset_df[split_df == 'test']
+
+    if args.for_qfid:
+        train_df.to_csv(os.path.join(args.dataset_path, 'train_qfid.csv'), index=False)
+        val_df.to_csv(os.path.join(args.dataset_path, 'val_qfid.csv'), index=False)
+        test_df.to_csv(os.path.join(args.dataset_path, 'test_qfid.csv'), index=False)
+    else:
+        train_df.to_csv(os.path.join(args.dataset_path, 'train.csv'), index=False)
+        val_df.to_csv(os.path.join(args.dataset_path, 'val.csv'), index=False)
+        test_df.to_csv(os.path.join(args.dataset_path, 'test.csv'), index=False)
+    logging.info('Done!')
+
+
+def anonymize_bib(args):
+    logging.info('Converting BIB identifiers...')
+    for split in ['val', 'test', 'train']:
+        if args.for_qfid:
+            df = pd.read_csv(os.path.join(args.dataset_path, '{}_qfid.csv'.format(split)))
+        else:
+            df = pd.read_csv(os.path.join(args.dataset_path, '{}.csv'.format(split)))
+        bar = tqdm(total=len(df))
+        for row in df.itertuples():
+            cnt = 1
+            bib_dict = {}
+            for i in range(len(row.reference)):
+                if row.reference[i:i+7] == '<s> BIB':
+                    bib_dict[row.reference[i+7:].split(' ')[0]] = cnt
+                    cnt += 1
+            ref = row.reference
+            tgt = row.target
+            for key, value in bib_dict.items():
+                ref = re.sub('BIB{}'.format(key), 'BIB{:0>3}'.format(value), ref)
+                tgt = re.sub('BIB{}'.format(key), 'BIB{:0>3}'.format(value), tgt)
+            df.at[row.Index, 'reference'] = ref
+            df.at[row.Index, 'target'] = tgt
+            bar.update(1)
+        logging.info('Saving...')
+        if args.for_qfid:
+            df.to_csv(os.path.join(args.dataset_path, '{}_qfid.csv'.format(split)), index=False)
+        else:
+            df.to_csv(os.path.join(args.dataset_path, '{}.csv'.format(split)), index=False)
+
+
+if __name__ == '__main__':
+    logging.basicConfig(format='%(message)s', level=logging.DEBUG)
+
+    parser = argparse.ArgumentParser(description='')
+    parser.add_argument('-dataset_path', default=".", help='Path to the generated dataset')
+    parser.add_argument('--for_qfid', action='store_true', help='Add if you train QFiD on the generated csv files')
+    args = parser.parse_args()
+
+    make_summarization_csv(args)  # Convert split_survey_df into csv files suitable for summarization
+    anonymize_bib(args)  # Converting BIB{paper_id} into BIB{001, 002, ...}