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Add dataset card

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  ---
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- dataset_info:
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- features:
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- - name: amino_acid_sequence
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- sequence: string
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- - name: length
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- dtype: int64
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- - name: c_alpha_coordinates
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- sequence:
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- sequence: float32
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- - name: distance_matrix
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- sequence:
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- sequence: float64
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- splits:
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- - name: train
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- num_bytes: 409754325
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- num_examples: 2992
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- download_size: 401898607
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- dataset_size: 409754325
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- configs:
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- - config_name: default
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- data_files:
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- - split: train
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- path: data/train-*
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  ---
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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  ---
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+ license: mit
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+ task_categories:
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+ - text-generation
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+ - image-generation
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+ tags:
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+ - protein
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+ - contact-map
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+ - structure
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+ - nanobody
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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  ---
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+
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+ # Protein Contact Map Dataset
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+
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+ ## Dataset Description
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+
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+ This dataset contains protein structures with contact maps and related information from nanobody sequences.
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+
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+ ### Dataset Summary
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+
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+ - **Number of proteins:** 2992
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+ - **Source:** Nanobody protein structures (nanos_networkx_small)
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+ - **Created by:** alexchilton
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+ - **Date:** 2025-05-04
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+
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+ ### Dataset Structure
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+
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+ Each protein entry contains:
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+ - `amino_acid_sequence`: List of amino acid names
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+ - `length`: Number of residues
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+ - `c_alpha_coordinates`: List of [x,y,z] coordinates for C-alpha atoms
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+ - `distance_matrix`: Pairwise distance matrix between C-alpha atoms
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+ - `contact_maps`: List of binary contact maps with different distance thresholds
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+ - `contact_map_configs`: Configuration for each contact map (lower/upper bounds)
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+
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+ ### Usage
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+
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+ ```python
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+ from datasets import load_dataset
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+ dataset = load_dataset("alexchilton/nanobody-contact-maps")
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+
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+ # Access a protein
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+ protein = dataset['train'][0]
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+ print(f"Length: {protein['length']}")
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+ print(f"First 10 residues: {protein['amino_acid_sequence'][:10]}")
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+ ```
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+
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+ ### Citation
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+
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+ If you use this dataset, please cite:
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+ ```
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+ @dataset{protein_contact_maps,
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+ title={Nanobody Protein Contact Map Dataset},
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+ author={Alex Chilton},
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+ year={2025},
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+ url={https://huggingface.co/datasets/alexchilton/nanobody-contact-maps}
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+ }
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+ ```