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        README.md
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              - name: distance_matrix
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                sequence:
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                  sequence: float64
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              splits:
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              - name: train
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                num_bytes: 409754325
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                num_examples: 2992
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              download_size: 401898607
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              dataset_size: 409754325
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            configs:
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            - config_name: default
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              data_files:
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              - split: train
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                path: data/train-*
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            license: mit
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            task_categories:
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            - text-generation
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            - image-generation
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            tags:
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            - protein
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            - contact-map
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            - structure
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            - nanobody
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            # Protein Contact Map Dataset
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            ## Dataset Description
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            This dataset contains protein structures with contact maps and related information from nanobody sequences.
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            ### Dataset Summary
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            - **Number of proteins:** 2992
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            - **Source:** Nanobody protein structures (nanos_networkx_small)
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            - **Created by:** alexchilton
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            - **Date:** 2025-05-04
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            ### Dataset Structure
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            Each protein entry contains:
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            - `amino_acid_sequence`: List of amino acid names
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            - `length`: Number of residues
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            - `c_alpha_coordinates`: List of [x,y,z] coordinates for C-alpha atoms
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            - `distance_matrix`: Pairwise distance matrix between C-alpha atoms
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            - `contact_maps`: List of binary contact maps with different distance thresholds
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            - `contact_map_configs`: Configuration for each contact map (lower/upper bounds)
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            ### Usage
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            ```python
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            from datasets import load_dataset
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            dataset = load_dataset("alexchilton/nanobody-contact-maps")
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            # Access a protein
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            protein = dataset['train'][0]
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            print(f"Length: {protein['length']}")
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            print(f"First 10 residues: {protein['amino_acid_sequence'][:10]}")
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            ```
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            ### Citation
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            If you use this dataset, please cite:
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            ```
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            @dataset{protein_contact_maps,
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              title={Nanobody Protein Contact Map Dataset},
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              author={Alex Chilton},
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              year={2025},
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              url={https://huggingface.co/datasets/alexchilton/nanobody-contact-maps}
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            }
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            ```
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