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+ ---
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+ license: cc-by-4.0
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+ tags:
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+ - biology
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+ - rna
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+ - genomics
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+ ---
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+ # Overview
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+
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+ Gene Ontology (GO) is a database of gene-level functional annotations. This specific dataset collects the molecular function and activities of specific genes. The GO exists as a heirarchy, and we subset to GO terms at most 3 levels away from the molecular function root.
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+
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+ This dataset is redistributed as part of mRNABench: https://github.com/morrislab/mRNABench
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+
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+ # Data Format
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+
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+ Description of data columns:
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+ - `target`: Multihot label indicating GO terms applicable to transcript.
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+ The label positions correspond to: `["GO:0004672": 0, "GO:0008201": 1, "GO:0003723": 2, "GO:0005102": 3, "GO:0019904": 4, "GO:0019899": 5, "GO:0046983": 6, "GO:0051015": 7, "GO:0000981": 8, "GO:0005516": 9, "GO:0042802": 10, "GO:0020037": 11, "GO:0003677": 12, "GO:0042393": 13, "GO:0003714": 14, "GO:0005178": 15, "GO:0004888": 16, "GO:0005543": 17, "GO:0044325": 18, "GO:0003713": 19]`
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+ - `cds`: Binary track which reports position of first nucleotide in each codon in CDS.
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+ - `splice`: Binary track which reports position of the 3' end of each exon, indicating splice sites.
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+
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+ # Data Source
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+ This dataset is processed using data collected in the [Gene Ontology Resource](https://geneontology.org/), which is licensed under the Creative Commons Attribution 4.0 Unported License.
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+
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+ Original papers:
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+ - https://pmc.ncbi.nlm.nih.gov/articles/PMC3037419/
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+ - https://pmc.ncbi.nlm.nih.gov/articles/PMC10158837/pdf/iyad031.pdf
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+
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+ Original dataset source: https://geneontology.org/docs/download-go-annotations/
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+ Citations:
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+ - Ashburner et al. Gene ontology: tool for the unification of biology. Nat Genet. 2000 May;25(1):25-9. DOI: 10.1038/75556
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+ - The Gene Ontology Consortium. The Gene Ontology knowledgebase in 2023. Genetics. 2023 May 4;224(1):iyad031. DOI: 10.1093/genetics/iyad031