|
{ |
|
"_name_or_path": "BetaDescribe-Validator-SubcellularLocalization", |
|
"architectures": [ |
|
"EsmForSequenceClassification" |
|
], |
|
"attention_probs_dropout_prob": 0.0, |
|
"classifier_dropout": null, |
|
"emb_layer_norm_before": false, |
|
"esmfold_config": null, |
|
"hidden_act": "gelu", |
|
"hidden_dropout_prob": 0.0, |
|
"hidden_size": 640, |
|
"id2label": { |
|
"0": "a band", |
|
"1": "acidocalcisome membrane", |
|
"2": "acrosome", |
|
"3": "acrosome inner membrane", |
|
"4": "acrosome lumen", |
|
"5": "acrosome membrane", |
|
"6": "actin patch", |
|
"7": "adherens junction", |
|
"8": "aleurone grain", |
|
"9": "aleurone grain membrane", |
|
"10": "amyloplast", |
|
"11": "amyloplast membrane", |
|
"12": "anammoxosome", |
|
"13": "apical cell membrane", |
|
"14": "apicolateral cell membrane", |
|
"15": "apicoplast", |
|
"16": "apoplast", |
|
"17": "archaeal flagellum", |
|
"18": "ascus epiplasm", |
|
"19": "attachment organelle", |
|
"20": "attachment organelle membrane", |
|
"21": "autolysosome membrane", |
|
"22": "autophagosome", |
|
"23": "autophagosome membrane", |
|
"24": "axon", |
|
"25": "bacterial flagellum", |
|
"26": "bacterial flagellum basal body", |
|
"27": "bacterial microcompartment", |
|
"28": "basal cell membrane", |
|
"29": "basement membrane", |
|
"30": "basolateral cell membrane", |
|
"31": "bud", |
|
"32": "bud membrane", |
|
"33": "bud neck", |
|
"34": "bud tip", |
|
"35": "cajal body", |
|
"36": "calyx", |
|
"37": "capsule", |
|
"38": "carboxysome", |
|
"39": "caveola", |
|
"40": "cell cortex", |
|
"41": "cell envelope", |
|
"42": "cell inner membrane", |
|
"43": "cell junction", |
|
"44": "cell membrane", |
|
"45": "cell outer membrane", |
|
"46": "cell projection", |
|
"47": "cell septum", |
|
"48": "cell surface", |
|
"49": "cell tip", |
|
"50": "cellular chromatophore membrane", |
|
"51": "cellular thylakoid lumen", |
|
"52": "cellular thylakoid membrane", |
|
"53": "cell wall", |
|
"54": "centriolar satellite", |
|
"55": "centriole", |
|
"56": "centromere", |
|
"57": "centrosome", |
|
"58": "chloroplast", |
|
"59": "chloroplast envelope", |
|
"60": "chloroplast inner membrane", |
|
"61": "chloroplast intermembrane space", |
|
"62": "chloroplast membrane", |
|
"63": "chloroplast nucleoid", |
|
"64": "chloroplast outer membrane", |
|
"65": "chloroplast stroma", |
|
"66": "chloroplast thylakoid", |
|
"67": "chloroplast thylakoid lumen", |
|
"68": "chloroplast thylakoid membrane", |
|
"69": "chlorosome", |
|
"70": "chlorosome envelope", |
|
"71": "chromaffin granule", |
|
"72": "chromaffin granule lumen", |
|
"73": "chromaffin granule membrane", |
|
"74": "chromoplast", |
|
"75": "chromoplast stroma", |
|
"76": "chromosome", |
|
"77": "cilium", |
|
"78": "cilium axoneme", |
|
"79": "cilium basal body", |
|
"80": "cilium membrane", |
|
"81": "cis-golgi network", |
|
"82": "cis-golgi network membrane", |
|
"83": "clathrin-coated pit", |
|
"84": "clathrin-coated vesicle", |
|
"85": "clathrin-coated vesicle membrane", |
|
"86": "cleavage furrow", |
|
"87": "coated pit", |
|
"88": "contractile vacuole", |
|
"89": "contractile vacuole membrane", |
|
"90": "copi-coated vesicle", |
|
"91": "copi-coated vesicle membrane", |
|
"92": "copii-coated vesicle", |
|
"93": "copii-coated vesicle membrane", |
|
"94": "cortical granule", |
|
"95": "cvt vesicle membrane", |
|
"96": "cyanelle", |
|
"97": "cyanelle stroma", |
|
"98": "cyanelle thylakoid lumen", |
|
"99": "cyanelle thylakoid membrane", |
|
"100": "cytolytic granule", |
|
"101": "cytoplasm", |
|
"102": "cytoplasmic granule", |
|
"103": "cytoplasmic granule lumen", |
|
"104": "cytoplasmic granule membrane", |
|
"105": "cytoplasmic ribonucleoprotein granule", |
|
"106": "cytoplasmic vesicle", |
|
"107": "cytoplasmic vesicle lumen", |
|
"108": "cytoplasmic vesicle membrane", |
|
"109": "cytoskeleton", |
|
"110": "cytosol", |
|
"111": "dendrite", |
|
"112": "dendritic spine", |
|
"113": "dendritic spine membrane", |
|
"114": "desmosome", |
|
"115": "dynein axonemal particle", |
|
"116": "early endosome", |
|
"117": "early endosome membrane", |
|
"118": "encapsulin nanocompartment", |
|
"119": "endomembrane system", |
|
"120": "endoplasmic reticulum", |
|
"121": "endoplasmic reticulum-golgi intermediate compartment", |
|
"122": "endoplasmic reticulum-golgi intermediate compartment membrane", |
|
"123": "endoplasmic reticulum lumen", |
|
"124": "endoplasmic reticulum membrane", |
|
"125": "endosome", |
|
"126": "endosome membrane", |
|
"127": "etioplast membrane", |
|
"128": "extracellular exosome", |
|
"129": "extracellular matrix", |
|
"130": "extracellular space", |
|
"131": "extracellular vesicle", |
|
"132": "extracellular vesicle membrane", |
|
"133": "filopodium", |
|
"134": "filopodium membrane", |
|
"135": "fimbrium", |
|
"136": "flagellar pocket", |
|
"137": "flagellum", |
|
"138": "flagellum axoneme", |
|
"139": "flagellum basal body", |
|
"140": "flagellum membrane", |
|
"141": "focal adhesion", |
|
"142": "forespore", |
|
"143": "forespore inner membrane", |
|
"144": "forespore intermembrane space", |
|
"145": "forespore membrane", |
|
"146": "forespore outer membrane", |
|
"147": "gap junction", |
|
"148": "gas vesicle", |
|
"149": "gas vesicle shell", |
|
"150": "gem", |
|
"151": "glycosome", |
|
"152": "glyoxysome", |
|
"153": "glyoxysome membrane", |
|
"154": "golgi apparatus", |
|
"155": "golgi apparatus lumen", |
|
"156": "golgi apparatus membrane", |
|
"157": "golgi outpost", |
|
"158": "golgi stack", |
|
"159": "golgi stack membrane", |
|
"160": "growth cone", |
|
"161": "hemidesmosome", |
|
"162": "host cell inner membrane", |
|
"163": "host cell junction", |
|
"164": "host cell membrane", |
|
"165": "host cell outer membrane", |
|
"166": "host cell surface", |
|
"167": "host cellular thylakoid membrane", |
|
"168": "host cell wall", |
|
"169": "host chloroplast envelope", |
|
"170": "host cytoplasm", |
|
"171": "host cytoplasmic vesicle", |
|
"172": "host cytoplasmic vesicle membrane", |
|
"173": "host cytoskeleton", |
|
"174": "host cytosol", |
|
"175": "host endoplasmic reticulum", |
|
"176": "host endoplasmic reticulum-golgi intermediate compartment", |
|
"177": "host endoplasmic reticulum lumen", |
|
"178": "host endoplasmic reticulum membrane", |
|
"179": "host endosome", |
|
"180": "host golgi apparatus", |
|
"181": "host golgi apparatus membrane", |
|
"182": "host membrane", |
|
"183": "host mitochondrion", |
|
"184": "host mitochondrion inner membrane", |
|
"185": "host mitochondrion membrane", |
|
"186": "host mitochondrion outer membrane", |
|
"187": "host multivesicular body", |
|
"188": "host nucleolus", |
|
"189": "host nucleoplasm", |
|
"190": "host nucleus", |
|
"191": "host nucleus envelope", |
|
"192": "host nucleus inner membrane", |
|
"193": "host nucleus matrix", |
|
"194": "host nucleus membrane", |
|
"195": "host perinuclear region", |
|
"196": "host periplasm", |
|
"197": "host plasmodesma", |
|
"198": "host rough endoplasmic reticulum", |
|
"199": "host rough endoplasmic reticulum membrane", |
|
"200": "hydrogenosome", |
|
"201": "hydrogenosome lumen", |
|
"202": "i band", |
|
"203": "inflammasome", |
|
"204": "inner membrane complex", |
|
"205": "interphotoreceptor matrix", |
|
"206": "invadopodium membrane", |
|
"207": "kinetochore", |
|
"208": "kinetoplast", |
|
"209": "lamellipodium", |
|
"210": "lamellipodium membrane", |
|
"211": "late endosome", |
|
"212": "late endosome lumen", |
|
"213": "late endosome membrane", |
|
"214": "lateral cell membrane", |
|
"215": "lipid droplet", |
|
"216": "lysosome", |
|
"217": "lysosome lumen", |
|
"218": "lysosome membrane", |
|
"219": "lytic vacuole", |
|
"220": "magnetosome", |
|
"221": "magnetosome membrane", |
|
"222": "melanosome", |
|
"223": "melanosome lumen", |
|
"224": "melanosome membrane", |
|
"225": "membrane", |
|
"226": "membrane raft", |
|
"227": "microneme", |
|
"228": "microneme membrane", |
|
"229": "microsome", |
|
"230": "microsome membrane", |
|
"231": "microtubule organizing center", |
|
"232": "microvillus", |
|
"233": "microvillus membrane", |
|
"234": "midbody", |
|
"235": "midbody ring", |
|
"236": "mitochondrion", |
|
"237": "mitochondrion envelope", |
|
"238": "mitochondrion inner membrane", |
|
"239": "mitochondrion intermembrane space", |
|
"240": "mitochondrion matrix", |
|
"241": "mitochondrion membrane", |
|
"242": "mitochondrion nucleoid", |
|
"243": "mitochondrion outer membrane", |
|
"244": "mitosome", |
|
"245": "mitosome matrix", |
|
"246": "mitosome membrane", |
|
"247": "m line", |
|
"248": "multivesicular body", |
|
"249": "multivesicular body membrane", |
|
"250": "myelin membrane", |
|
"251": "myofibril", |
|
"252": "nematocyst", |
|
"253": "neuronal dense core vesicle membrane", |
|
"254": "neuron projection", |
|
"255": "nuclear body", |
|
"256": "nuclear pore complex", |
|
"257": "nucleoid", |
|
"258": "nucleolus", |
|
"259": "nucleoplasm", |
|
"260": "nucleus", |
|
"261": "nucleus envelope", |
|
"262": "nucleus inner membrane", |
|
"263": "nucleus lamina", |
|
"264": "nucleus matrix", |
|
"265": "nucleus membrane", |
|
"266": "nucleus outer membrane", |
|
"267": "nucleus speckle", |
|
"268": "organellar chromatophore", |
|
"269": "organellar chromatophore thylakoid membrane", |
|
"270": "parasitophorous vacuole", |
|
"271": "parasitophorous vacuole lumen", |
|
"272": "parasitophorous vacuole membrane", |
|
"273": "p-body", |
|
"274": "peribacteroid membrane", |
|
"275": "peribacteroid space", |
|
"276": "perikaryon", |
|
"277": "perinuclear region", |
|
"278": "perinuclear theca", |
|
"279": "periplasm", |
|
"280": "periplasmic flagellum", |
|
"281": "perispore", |
|
"282": "peroxisome", |
|
"283": "peroxisome matrix", |
|
"284": "peroxisome membrane", |
|
"285": "phagocytic cup", |
|
"286": "phagosome", |
|
"287": "phagosome membrane", |
|
"288": "photoreceptor inner segment", |
|
"289": "photoreceptor inner segment membrane", |
|
"290": "photoreceptor outer segment", |
|
"291": "photoreceptor outer segment membrane", |
|
"292": "phragmoplast", |
|
"293": "plasmodesma", |
|
"294": "plastid", |
|
"295": "plastid inner membrane", |
|
"296": "plastid membrane", |
|
"297": "plastid outer membrane", |
|
"298": "plastid stroma", |
|
"299": "plastid thylakoid membrane", |
|
"300": "plastoglobule", |
|
"301": "pml body", |
|
"302": "podosome", |
|
"303": "pollen coat", |
|
"304": "postsynapse", |
|
"305": "postsynaptic cell membrane", |
|
"306": "postsynaptic density", |
|
"307": "postsynaptic density membrane", |
|
"308": "postsynaptic recycling endosome membrane", |
|
"309": "preautophagosomal structure", |
|
"310": "preautophagosomal structure membrane", |
|
"311": "presynapse", |
|
"312": "presynaptic active zone", |
|
"313": "presynaptic cell membrane", |
|
"314": "prevacuolar compartment", |
|
"315": "prevacuolar compartment membrane", |
|
"316": "primary cell wall", |
|
"317": "prospore", |
|
"318": "prospore membrane", |
|
"319": "protein storage vacuole", |
|
"320": "protein storage vacuole lumen", |
|
"321": "protein storage vacuole membrane", |
|
"322": "pseudopodium", |
|
"323": "recycling endosome", |
|
"324": "recycling endosome membrane", |
|
"325": "rhoptry membrane", |
|
"326": "rough endoplasmic reticulum", |
|
"327": "rough endoplasmic reticulum lumen", |
|
"328": "rough endoplasmic reticulum membrane", |
|
"329": "ruffle", |
|
"330": "ruffle membrane", |
|
"331": "sarcolemma", |
|
"332": "sarcomere", |
|
"333": "sarcoplasmic reticulum", |
|
"334": "sarcoplasmic reticulum lumen", |
|
"335": "sarcoplasmic reticulum membrane", |
|
"336": "secreted", |
|
"337": "secretory vesicle", |
|
"338": "secretory vesicle lumen", |
|
"339": "secretory vesicle membrane", |
|
"340": "septate junction", |
|
"341": "s-layer", |
|
"342": "smooth endoplasmic reticulum membrane", |
|
"343": "spindle", |
|
"344": "spindle pole", |
|
"345": "spindle pole body", |
|
"346": "spore", |
|
"347": "spore coat", |
|
"348": "spore core", |
|
"349": "spore cortex", |
|
"350": "spore membrane", |
|
"351": "spore outer membrane", |
|
"352": "spore polar tube", |
|
"353": "spore wall", |
|
"354": "stereocilium", |
|
"355": "stereocilium membrane", |
|
"356": "stress fiber", |
|
"357": "stress granule", |
|
"358": "surface film", |
|
"359": "symbiosome", |
|
"360": "synapse", |
|
"361": "synaptic cell membrane", |
|
"362": "synaptic cleft", |
|
"363": "synaptic vesicle", |
|
"364": "synaptic vesicle membrane", |
|
"365": "synaptosome", |
|
"366": "target cell", |
|
"367": "target cell cytoplasm", |
|
"368": "target cell membrane", |
|
"369": "tegument membrane", |
|
"370": "telomere", |
|
"371": "thylakoid", |
|
"372": "tight junction", |
|
"373": "trans-golgi network", |
|
"374": "trans-golgi network membrane", |
|
"375": "trichocyst", |
|
"376": "t-tubule", |
|
"377": "vacuole", |
|
"378": "vacuole lumen", |
|
"379": "vacuole membrane", |
|
"380": "vesicle", |
|
"381": "virion", |
|
"382": "virion membrane", |
|
"383": "virion tegument", |
|
"384": "z line", |
|
"385": "zona pellucida", |
|
"386": "zymogen granule", |
|
"387": "zymogen granule membrane" |
|
}, |
|
"initializer_range": 0.02, |
|
"intermediate_size": 2560, |
|
"is_folding_model": false, |
|
"label2id": { |
|
"a band": 0, |
|
"acidocalcisome membrane": 1, |
|
"acrosome": 2, |
|
"acrosome inner membrane": 3, |
|
"acrosome lumen": 4, |
|
"acrosome membrane": 5, |
|
"actin patch": 6, |
|
"adherens junction": 7, |
|
"aleurone grain": 8, |
|
"aleurone grain membrane": 9, |
|
"amyloplast": 10, |
|
"amyloplast membrane": 11, |
|
"anammoxosome": 12, |
|
"apical cell membrane": 13, |
|
"apicolateral cell membrane": 14, |
|
"apicoplast": 15, |
|
"apoplast": 16, |
|
"archaeal flagellum": 17, |
|
"ascus epiplasm": 18, |
|
"attachment organelle": 19, |
|
"attachment organelle membrane": 20, |
|
"autolysosome membrane": 21, |
|
"autophagosome": 22, |
|
"autophagosome membrane": 23, |
|
"axon": 24, |
|
"bacterial flagellum": 25, |
|
"bacterial flagellum basal body": 26, |
|
"bacterial microcompartment": 27, |
|
"basal cell membrane": 28, |
|
"basement membrane": 29, |
|
"basolateral cell membrane": 30, |
|
"bud": 31, |
|
"bud membrane": 32, |
|
"bud neck": 33, |
|
"bud tip": 34, |
|
"cajal body": 35, |
|
"calyx": 36, |
|
"capsule": 37, |
|
"carboxysome": 38, |
|
"caveola": 39, |
|
"cell cortex": 40, |
|
"cell envelope": 41, |
|
"cell inner membrane": 42, |
|
"cell junction": 43, |
|
"cell membrane": 44, |
|
"cell outer membrane": 45, |
|
"cell projection": 46, |
|
"cell septum": 47, |
|
"cell surface": 48, |
|
"cell tip": 49, |
|
"cell wall": 53, |
|
"cellular chromatophore membrane": 50, |
|
"cellular thylakoid lumen": 51, |
|
"cellular thylakoid membrane": 52, |
|
"centriolar satellite": 54, |
|
"centriole": 55, |
|
"centromere": 56, |
|
"centrosome": 57, |
|
"chloroplast": 58, |
|
"chloroplast envelope": 59, |
|
"chloroplast inner membrane": 60, |
|
"chloroplast intermembrane space": 61, |
|
"chloroplast membrane": 62, |
|
"chloroplast nucleoid": 63, |
|
"chloroplast outer membrane": 64, |
|
"chloroplast stroma": 65, |
|
"chloroplast thylakoid": 66, |
|
"chloroplast thylakoid lumen": 67, |
|
"chloroplast thylakoid membrane": 68, |
|
"chlorosome": 69, |
|
"chlorosome envelope": 70, |
|
"chromaffin granule": 71, |
|
"chromaffin granule lumen": 72, |
|
"chromaffin granule membrane": 73, |
|
"chromoplast": 74, |
|
"chromoplast stroma": 75, |
|
"chromosome": 76, |
|
"cilium": 77, |
|
"cilium axoneme": 78, |
|
"cilium basal body": 79, |
|
"cilium membrane": 80, |
|
"cis-golgi network": 81, |
|
"cis-golgi network membrane": 82, |
|
"clathrin-coated pit": 83, |
|
"clathrin-coated vesicle": 84, |
|
"clathrin-coated vesicle membrane": 85, |
|
"cleavage furrow": 86, |
|
"coated pit": 87, |
|
"contractile vacuole": 88, |
|
"contractile vacuole membrane": 89, |
|
"copi-coated vesicle": 90, |
|
"copi-coated vesicle membrane": 91, |
|
"copii-coated vesicle": 92, |
|
"copii-coated vesicle membrane": 93, |
|
"cortical granule": 94, |
|
"cvt vesicle membrane": 95, |
|
"cyanelle": 96, |
|
"cyanelle stroma": 97, |
|
"cyanelle thylakoid lumen": 98, |
|
"cyanelle thylakoid membrane": 99, |
|
"cytolytic granule": 100, |
|
"cytoplasm": 101, |
|
"cytoplasmic granule": 102, |
|
"cytoplasmic granule lumen": 103, |
|
"cytoplasmic granule membrane": 104, |
|
"cytoplasmic ribonucleoprotein granule": 105, |
|
"cytoplasmic vesicle": 106, |
|
"cytoplasmic vesicle lumen": 107, |
|
"cytoplasmic vesicle membrane": 108, |
|
"cytoskeleton": 109, |
|
"cytosol": 110, |
|
"dendrite": 111, |
|
"dendritic spine": 112, |
|
"dendritic spine membrane": 113, |
|
"desmosome": 114, |
|
"dynein axonemal particle": 115, |
|
"early endosome": 116, |
|
"early endosome membrane": 117, |
|
"encapsulin nanocompartment": 118, |
|
"endomembrane system": 119, |
|
"endoplasmic reticulum": 120, |
|
"endoplasmic reticulum lumen": 123, |
|
"endoplasmic reticulum membrane": 124, |
|
"endoplasmic reticulum-golgi intermediate compartment": 121, |
|
"endoplasmic reticulum-golgi intermediate compartment membrane": 122, |
|
"endosome": 125, |
|
"endosome membrane": 126, |
|
"etioplast membrane": 127, |
|
"extracellular exosome": 128, |
|
"extracellular matrix": 129, |
|
"extracellular space": 130, |
|
"extracellular vesicle": 131, |
|
"extracellular vesicle membrane": 132, |
|
"filopodium": 133, |
|
"filopodium membrane": 134, |
|
"fimbrium": 135, |
|
"flagellar pocket": 136, |
|
"flagellum": 137, |
|
"flagellum axoneme": 138, |
|
"flagellum basal body": 139, |
|
"flagellum membrane": 140, |
|
"focal adhesion": 141, |
|
"forespore": 142, |
|
"forespore inner membrane": 143, |
|
"forespore intermembrane space": 144, |
|
"forespore membrane": 145, |
|
"forespore outer membrane": 146, |
|
"gap junction": 147, |
|
"gas vesicle": 148, |
|
"gas vesicle shell": 149, |
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"gem": 150, |
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}, |
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} |
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|