Update README.md
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README.md
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@@ -43,7 +43,7 @@ with open('./generation-configs/meta2diff.json', 'r') as f:
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# prepare sample
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config_sample = {"inputs": config_data, "mode": "meta2diff", "parameters": {
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"temperature": 0.
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"top_p": 0.2,
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"top_k": 3550,
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"n_next_tokens": 50
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@@ -109,8 +109,7 @@ You can use the following instructions (one or several at a time):
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1. disease2diff2disease - generate signature for disease
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2. compound2diff2compound - generate signature for compound
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3. age_group2diff2age_group - generate signature for age
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4. age_individ2diff2age_individ - generate signature based on age value
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### Other meta-data (`inputs.` in config)
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_Example 2_
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You want to generate signature for healthy Human, male, 40 years, in tissue - whole blood.
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```json
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{
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"inputs": {
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"instruction": "disease2diff2disease",
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"tissue": ["whole blood"],
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"age":
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"cell": "",
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"efo": "",
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"datatype": "",
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"drug": "",
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"dose": "",
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"time": "",
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"case": "",
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"control": "",
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"dataset_type": "expression",
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"gender": "m",
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```
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Note, here we used ```disease2diff2disease``` instruction, but we expected to generate signatures for healthy human, that's why we'd set ```efo``` to empty string "".
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Alternatively, we can add one more instruction to example 2 - ```"instruction": ["disease2diff2disease", "
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---
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# prepare sample
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config_sample = {"inputs": config_data, "mode": "meta2diff", "parameters": {
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"temperature": 0.8,
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"top_p": 0.2,
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"top_k": 3550,
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"n_next_tokens": 50
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1. disease2diff2disease - generate signature for disease
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2. compound2diff2compound - generate signature for compound
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3. age_group2diff2age_group - generate signature for age group / predict age group based on signature
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### Other meta-data (`inputs.` in config)
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_Example 2_
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You want to generate signature for healthy Human, male, 40-50 years, in tissue - whole blood.
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```json
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{
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"inputs": {
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"instruction": ["disease2diff2disease", "age_group2diff2age_group"],
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"tissue": ["whole blood"],
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"age": "",
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"cell": "",
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"efo": "",
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"datatype": "",
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"drug": "",
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"dose": "",
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"time": "",
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"case": "40.0-50.0",
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"control": "",
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"dataset_type": "expression",
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"gender": "m",
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```
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Note, here we used ```disease2diff2disease``` instruction, but we expected to generate signatures for healthy human, that's why we'd set ```efo``` to empty string "".
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Alternatively, we can add one more instruction to example 2 - ```"instruction": ["disease2diff2disease", "age_group2diff2age_group"]```
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---
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