update for MetaTensor
Browse files- configs/inference.json +0 -4
- configs/metadata.json +6 -5
- configs/train.json +2 -11
configs/inference.json
CHANGED
@@ -42,10 +42,6 @@
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"keys": "image",
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"nonzero": true,
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"channel_wise": true
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},
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{
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"_target_": "ToTensord",
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"keys": "image"
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}
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]
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},
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"keys": "image",
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"nonzero": true,
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"channel_wise": true
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}
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]
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},
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configs/metadata.json
CHANGED
@@ -1,15 +1,16 @@
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{
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"schema": "https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/meta_schema_20220324.json",
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"version": "0.1.
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"changelog": {
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"0.1.0": "complete the model package"
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},
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"monai_version": "0.9.
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"pytorch_version": "1.12.0",
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"numpy_version": "1.
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"optional_packages_version": {
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"nibabel": "
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"pytorch-ignite": "0.4.
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},
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"task": "Multimodal Brain Tumor segmentation",
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"description": "A pre-trained model for volumetric (3D) segmentation of brain tumor subregions from multimodal MRIs based on BraTS 2018 data",
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{
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"schema": "https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/meta_schema_20220324.json",
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"version": "0.1.1",
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"changelog": {
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"0.1.1": "update for MetaTensor",
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"0.1.0": "complete the model package"
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},
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"monai_version": "0.9.1",
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"pytorch_version": "1.12.0",
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"numpy_version": "1.22.4",
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"optional_packages_version": {
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"nibabel": "4.0.1",
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"pytorch-ignite": "0.4.9"
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},
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"task": "Multimodal Brain Tumor segmentation",
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"description": "A pre-trained model for volumetric (3D) segmentation of brain tumor subregions from multimodal MRIs based on BraTS 2018 data",
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configs/train.json
CHANGED
@@ -127,18 +127,9 @@
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"prob": 1.0
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}
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],
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"final_transforms": [
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{
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"_target_": "ToTensord",
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"keys": [
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"image",
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"label"
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]
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}
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],
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"preprocessing": {
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"_target_": "Compose",
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"transforms": "$@train#preprocessing_transforms + @train#random_transforms
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},
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"dataset": {
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"_target_": "Dataset",
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@@ -219,7 +210,7 @@
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"validate": {
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"preprocessing": {
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"_target_": "Compose",
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"transforms": "$@train#preprocessing_transforms
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},
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"dataset": {
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"_target_": "Dataset",
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"prob": 1.0
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}
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],
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"preprocessing": {
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"_target_": "Compose",
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"transforms": "$@train#preprocessing_transforms + @train#random_transforms"
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},
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"dataset": {
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"_target_": "Dataset",
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"validate": {
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"preprocessing": {
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"_target_": "Compose",
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"transforms": "$@train#preprocessing_transforms"
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},
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"dataset": {
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"_target_": "Dataset",
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