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README.md

@@ -6,7 +6,7 @@ tags:
 - genomics
 - single-cell
 - anndata_version:0.11.3
-- python_version:3.11.11
+- python_version:3.11.12
 - popV
 - 'tissue: aorta'
 ---
@@ -32,23 +32,23 @@ computed on a 10% random subset of the data that was not used for training.
 
 | Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |
 | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
-| aortic endothelial cell | 29 | 0.96 | 0.98 | 0.93 | 0.98 | 0.00 | 0.98 | 1.00 | 1.00 | 1.00 |
-| fibroblast of cardiac tissue | 11 | 1.00 | 1.00 | 0.81 | 0.91 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |
-| professional antigen presenting cell | 5 | 0.71 | 0.73 | 0.77 | 0.00 | 0.00 | 0.77 | 0.83 | 0.71 | 0.77 |
-| fibrocyte | 2 | 0.67 | 0.00 | 0.00 | 0.00 | 0.00 | 0.67 | 0.67 | 0.00 | 0.67 |
-| macrophage | 1 | 1.00 | 0.67 | 1.00 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |
-| epithelial cell | 2 | 0.67 | 0.00 | 0.00 | 0.00 | 0.00 | 0.67 | 0.67 | 0.00 | 0.00 |
+| aortic endothelial cell | 16 | 0.94 | 0.97 | 0.90 | 1.00 | 0.00 | 0.97 | 1.00 | 0.97 | 0.97 |
+| fibroblast of cardiac tissue | 13 | 1.00 | 1.00 | 0.93 | 1.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |
+| professional antigen presenting cell | 3 | 0.67 | 0.80 | 0.80 | 1.00 | 0.00 | 0.86 | 1.00 | 0.80 | 0.80 |
+| fibrocyte | 1 | 1.00 | 0.00 | 0.00 | 0.67 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |
+| macrophage | 2 | 1.00 | 0.80 | 0.80 | 0.67 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |
+| epithelial cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
 
 The train accuracies are computed on the training data.
 
 | Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |
 | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
-| aortic endothelial cell | 423 | 1.00 | 0.95 | 0.92 | 0.97 | 0.00 | 0.98 | 1.00 | 1.00 | 1.00 |
-| fibroblast of cardiac tissue | 197 | 1.00 | 0.94 | 0.87 | 0.96 | 0.00 | 0.95 | 1.00 | 1.00 | 1.00 |
-| professional antigen presenting cell | 115 | 1.00 | 0.83 | 0.89 | 0.84 | 0.00 | 0.97 | 1.00 | 1.00 | 1.00 |
-| fibrocyte | 37 | 1.00 | 0.20 | 0.67 | 0.63 | 0.00 | 0.82 | 1.00 | 1.00 | 1.00 |
-| macrophage | 27 | 1.00 | 0.63 | 0.81 | 0.80 | 0.00 | 0.79 | 1.00 | 1.00 | 1.00 |
-| epithelial cell | 16 | 1.00 | 0.00 | 0.12 | 0.62 | 0.00 | 0.80 | 1.00 | 1.00 | 1.00 |
+| aortic endothelial cell | 417 | 0.97 | 0.95 | 0.94 | 0.98 | 0.00 | 0.98 | 1.00 | 1.00 | 1.00 |
+| fibroblast of cardiac tissue | 195 | 0.96 | 0.95 | 0.88 | 0.95 | 0.00 | 0.98 | 1.00 | 1.00 | 0.99 |
+| professional antigen presenting cell | 118 | 0.86 | 0.87 | 0.89 | 0.91 | 0.00 | 0.96 | 1.00 | 1.00 | 1.00 |
+| fibrocyte | 43 | 0.67 | 0.35 | 0.69 | 0.67 | 0.00 | 0.88 | 1.00 | 1.00 | 0.98 |
+| macrophage | 26 | 0.80 | 0.68 | 0.83 | 0.64 | 0.00 | 0.87 | 1.00 | 1.00 | 0.95 |
+| epithelial cell | 16 | 0.33 | 0.00 | 0.32 | 0.76 | 0.00 | 0.81 | 1.00 | 1.00 | 0.97 |
 
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