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popV
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tabula_muris_Bone_marrow_10x

Joblib
popV
biology
genomics
single-cell
anndata_version:0.11.3
python_version:3.11.12
tissue: bone marrow
Model card Files Community
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@@ -6,7 +6,7 @@ tags:
6
  - genomics
7
  - single-cell
8
  - anndata_version:0.11.3
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- - python_version:3.11.11
10
  - popV
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  - 'tissue: bone marrow'
12
  ---
@@ -32,47 +32,47 @@ computed on a 10% random subset of the data that was not used for training.
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  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
34
  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
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- | granulocyte | 1151 | 0.95 | 0.97 | 0.95 | 0.95 | 0.00 | 0.93 | 0.91 | 0.94 | 0.97 |
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- | granulocytopoietic cell | 763 | 0.91 | 0.92 | 0.94 | 0.93 | 0.00 | 0.90 | 0.89 | 0.91 | 0.94 |
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- | proerythroblast | 326 | 0.84 | 0.91 | 0.85 | 0.85 | 0.00 | 0.82 | 0.80 | 0.82 | 0.89 |
38
- | promonocyte | 285 | 0.89 | 0.94 | 0.91 | 0.92 | 0.00 | 0.92 | 0.93 | 0.93 | 0.94 |
39
- | monocyte | 258 | 0.93 | 0.96 | 0.93 | 0.93 | 0.00 | 0.93 | 0.95 | 0.95 | 0.95 |
40
- | erythroblast | 234 | 0.88 | 0.90 | 0.92 | 0.91 | 0.00 | 0.91 | 0.89 | 0.90 | 0.92 |
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- | hematopoietic precursor cell | 213 | 0.94 | 0.94 | 0.96 | 0.93 | 0.00 | 0.93 | 0.95 | 0.93 | 0.96 |
42
- | megakaryocyte-erythroid progenitor cell | 174 | 0.79 | 0.88 | 0.86 | 0.84 | 0.00 | 0.82 | 0.78 | 0.79 | 0.88 |
43
- | naive T cell | 151 | 0.89 | 0.93 | 0.91 | 0.93 | 0.00 | 0.93 | 0.92 | 0.89 | 0.94 |
44
- | macrophage | 97 | 0.74 | 0.88 | 0.84 | 0.87 | 0.00 | 0.84 | 0.86 | 0.85 | 0.87 |
45
- | precursor B cell | 91 | 0.98 | 0.99 | 0.99 | 0.98 | 0.00 | 0.98 | 0.98 | 0.98 | 0.99 |
46
- | immature B cell | 87 | 0.87 | 0.75 | 0.87 | 0.98 | 0.00 | 0.94 | 0.66 | 0.90 | 0.95 |
47
- | late pro-B cell | 48 | 0.99 | 0.99 | 0.97 | 0.95 | 0.00 | 0.96 | 0.96 | 0.98 | 0.99 |
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- | plasma cell | 45 | 0.93 | 0.93 | 0.94 | 0.84 | 0.00 | 0.92 | 0.96 | 0.87 | 0.97 |
49
- | erythroid progenitor cell, mammalian | 33 | 0.97 | 0.00 | 0.79 | 0.83 | 0.00 | 0.88 | 0.94 | 0.88 | 0.97 |
50
- | naive B cell | 42 | 0.99 | 0.98 | 0.99 | 0.99 | 0.00 | 0.99 | 0.99 | 0.98 | 1.00 |
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- | natural killer cell | 9 | 0.72 | 0.89 | 0.88 | 0.67 | 0.00 | 0.55 | 0.78 | 0.80 | 0.86 |
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- | basophil | 15 | 0.84 | 0.12 | 0.74 | 0.65 | 0.00 | 0.83 | 0.76 | 0.84 | 0.88 |
53
 
54
  The train accuracies are computed on the training data.
55
 
56
  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
57
  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
58
- | granulocyte | 9905 | 0.94 | 0.96 | 0.95 | 0.96 | 0.00 | 0.94 | 0.92 | 0.94 | 0.97 |
59
- | granulocytopoietic cell | 6836 | 0.92 | 0.92 | 0.95 | 0.95 | 0.00 | 0.90 | 0.90 | 0.92 | 0.95 |
60
- | proerythroblast | 3287 | 0.85 | 0.89 | 0.87 | 0.89 | 0.00 | 0.86 | 0.83 | 0.86 | 0.92 |
61
- | promonocyte | 2542 | 0.91 | 0.94 | 0.95 | 0.95 | 0.00 | 0.94 | 0.94 | 0.94 | 0.96 |
62
- | monocyte | 2135 | 0.93 | 0.96 | 0.95 | 0.96 | 0.00 | 0.94 | 0.95 | 0.95 | 0.96 |
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- | erythroblast | 2126 | 0.90 | 0.91 | 0.94 | 0.95 | 0.00 | 0.93 | 0.92 | 0.92 | 0.95 |
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- | hematopoietic precursor cell | 1931 | 0.95 | 0.96 | 0.97 | 0.97 | 0.00 | 0.96 | 0.97 | 0.97 | 0.98 |
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- | megakaryocyte-erythroid progenitor cell | 1700 | 0.80 | 0.88 | 0.90 | 0.90 | 0.00 | 0.84 | 0.82 | 0.84 | 0.89 |
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- | naive T cell | 1417 | 0.92 | 0.94 | 0.95 | 0.96 | 0.00 | 0.94 | 0.95 | 0.95 | 0.96 |
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- | macrophage | 891 | 0.80 | 0.91 | 0.90 | 0.92 | 0.00 | 0.89 | 0.92 | 0.91 | 0.93 |
68
- | precursor B cell | 824 | 0.97 | 0.99 | 0.99 | 0.98 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |
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- | immature B cell | 739 | 0.86 | 0.77 | 0.90 | 0.98 | 0.00 | 0.95 | 0.73 | 0.94 | 0.98 |
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- | late pro-B cell | 484 | 0.99 | 0.98 | 0.98 | 0.99 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |
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- | plasma cell | 400 | 0.94 | 0.93 | 0.96 | 0.91 | 0.00 | 0.92 | 0.97 | 0.96 | 0.97 |
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- | erythroid progenitor cell, mammalian | 376 | 0.94 | 0.00 | 0.86 | 0.90 | 0.00 | 0.86 | 0.91 | 0.90 | 0.95 |
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- | naive B cell | 356 | 0.96 | 0.98 | 0.98 | 0.98 | 0.00 | 0.98 | 0.99 | 0.99 | 0.99 |
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- | natural killer cell | 140 | 0.77 | 0.89 | 0.92 | 0.83 | 0.00 | 0.78 | 0.87 | 0.94 | 0.93 |
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- | basophil | 109 | 0.87 | 0.35 | 0.92 | 0.90 | 0.00 | 0.91 | 0.85 | 0.97 | 0.95 |
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77
  </details>
78
 
 
6
  - genomics
7
  - single-cell
8
  - anndata_version:0.11.3
9
+ - python_version:3.11.12
10
  - popV
11
  - 'tissue: bone marrow'
12
  ---
 
32
 
33
  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
34
  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
35
+ | granulocyte | 1146 | 0.94 | 0.96 | 0.95 | 0.96 | 0.00 | 0.95 | 0.92 | 0.94 | 0.96 |
36
+ | granulocytopoietic cell | 741 | 0.91 | 0.92 | 0.93 | 0.94 | 0.00 | 0.90 | 0.89 | 0.91 | 0.94 |
37
+ | proerythroblast | 349 | 0.85 | 0.90 | 0.83 | 0.86 | 0.00 | 0.88 | 0.82 | 0.83 | 0.89 |
38
+ | promonocyte | 281 | 0.90 | 0.95 | 0.92 | 0.93 | 0.00 | 0.92 | 0.93 | 0.93 | 0.94 |
39
+ | monocyte | 263 | 0.93 | 0.96 | 0.93 | 0.93 | 0.00 | 0.93 | 0.94 | 0.95 | 0.95 |
40
+ | erythroblast | 239 | 0.90 | 0.91 | 0.91 | 0.91 | 0.00 | 0.94 | 0.93 | 0.92 | 0.95 |
41
+ | hematopoietic precursor cell | 210 | 0.95 | 0.95 | 0.96 | 0.95 | 0.00 | 0.93 | 0.96 | 0.94 | 0.96 |
42
+ | megakaryocyte-erythroid progenitor cell | 181 | 0.81 | 0.89 | 0.84 | 0.85 | 0.00 | 0.83 | 0.78 | 0.82 | 0.88 |
43
+ | naive T cell | 148 | 0.92 | 0.94 | 0.91 | 0.92 | 0.00 | 0.91 | 0.92 | 0.94 | 0.95 |
44
+ | macrophage | 98 | 0.79 | 0.89 | 0.87 | 0.89 | 0.00 | 0.88 | 0.86 | 0.87 | 0.89 |
45
+ | precursor B cell | 91 | 0.98 | 0.99 | 0.99 | 0.98 | 0.00 | 0.98 | 0.99 | 1.00 | 1.00 |
46
+ | immature B cell | 83 | 0.87 | 0.79 | 0.83 | 0.97 | 0.00 | 0.96 | 0.71 | 0.93 | 0.98 |
47
+ | late pro-B cell | 51 | 0.99 | 0.99 | 0.98 | 0.98 | 0.00 | 0.98 | 0.99 | 0.98 | 0.99 |
48
+ | plasma cell | 54 | 0.91 | 0.85 | 0.95 | 0.85 | 0.00 | 0.78 | 0.95 | 0.92 | 0.97 |
49
+ | erythroid progenitor cell, mammalian | 31 | 0.92 | 0.00 | 0.72 | 0.92 | 0.00 | 0.71 | 0.91 | 0.85 | 0.94 |
50
+ | naive B cell | 37 | 0.97 | 1.00 | 1.00 | 1.00 | 0.00 | 0.99 | 1.00 | 0.99 | 1.00 |
51
+ | natural killer cell | 6 | 0.67 | 0.83 | 0.91 | 0.60 | 0.00 | 0.52 | 0.55 | 0.83 | 0.86 |
52
+ | basophil | 13 | 0.81 | 0.13 | 0.67 | 0.87 | 0.00 | 0.73 | 0.73 | 0.84 | 0.83 |
53
 
54
  The train accuracies are computed on the training data.
55
 
56
  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
57
  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
58
+ | granulocyte | 9910 | 0.94 | 0.96 | 0.96 | 0.96 | 0.00 | 0.95 | 0.92 | 0.94 | 0.97 |
59
+ | granulocytopoietic cell | 6858 | 0.91 | 0.92 | 0.95 | 0.95 | 0.00 | 0.90 | 0.89 | 0.92 | 0.95 |
60
+ | proerythroblast | 3264 | 0.85 | 0.89 | 0.87 | 0.89 | 0.00 | 0.88 | 0.83 | 0.85 | 0.91 |
61
+ | promonocyte | 2546 | 0.91 | 0.94 | 0.94 | 0.95 | 0.00 | 0.93 | 0.94 | 0.95 | 0.96 |
62
+ | monocyte | 2130 | 0.93 | 0.96 | 0.95 | 0.96 | 0.00 | 0.93 | 0.95 | 0.96 | 0.96 |
63
+ | erythroblast | 2121 | 0.90 | 0.91 | 0.95 | 0.94 | 0.00 | 0.93 | 0.92 | 0.93 | 0.95 |
64
+ | hematopoietic precursor cell | 1934 | 0.95 | 0.97 | 0.97 | 0.97 | 0.00 | 0.95 | 0.97 | 0.97 | 0.98 |
65
+ | megakaryocyte-erythroid progenitor cell | 1693 | 0.80 | 0.88 | 0.90 | 0.91 | 0.00 | 0.84 | 0.80 | 0.84 | 0.90 |
66
+ | naive T cell | 1420 | 0.91 | 0.95 | 0.95 | 0.96 | 0.00 | 0.93 | 0.96 | 0.97 | 0.97 |
67
+ | macrophage | 890 | 0.80 | 0.90 | 0.90 | 0.93 | 0.00 | 0.90 | 0.92 | 0.92 | 0.93 |
68
+ | precursor B cell | 824 | 0.98 | 0.99 | 0.99 | 0.99 | 0.00 | 0.98 | 0.99 | 0.98 | 0.99 |
69
+ | immature B cell | 743 | 0.88 | 0.79 | 0.89 | 0.97 | 0.00 | 0.97 | 0.74 | 0.94 | 0.98 |
70
+ | late pro-B cell | 481 | 0.99 | 0.98 | 0.98 | 0.99 | 0.00 | 0.98 | 0.99 | 0.98 | 1.00 |
71
+ | plasma cell | 391 | 0.93 | 0.93 | 0.96 | 0.91 | 0.00 | 0.82 | 0.97 | 0.94 | 0.98 |
72
+ | erythroid progenitor cell, mammalian | 378 | 0.93 | 0.00 | 0.84 | 0.91 | 0.00 | 0.76 | 0.92 | 0.88 | 0.94 |
73
+ | naive B cell | 361 | 0.95 | 0.98 | 0.98 | 0.98 | 0.00 | 0.96 | 0.99 | 0.98 | 0.99 |
74
+ | natural killer cell | 143 | 0.77 | 0.88 | 0.92 | 0.84 | 0.00 | 0.79 | 0.82 | 0.95 | 0.95 |
75
+ | basophil | 111 | 0.92 | 0.33 | 0.92 | 0.86 | 0.00 | 0.84 | 0.82 | 0.94 | 0.94 |
76
 
77
  </details>
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