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@@ -33,3 +33,4 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
 *.zip filter=lfs diff=lfs merge=lfs -text
 *.zst filter=lfs diff=lfs merge=lfs -text
 *tfevents* filter=lfs diff=lfs merge=lfs -text
+OnClass.data-00000-of-00001 filter=lfs diff=lfs merge=lfs -text

OnClass.data-00000-of-00001

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OnClass.npz

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accuracies.json

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+{
+    "query_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| granulocyte | 1151 | 0.95 | 0.97 | 0.95 | 0.95 | 0.00 | 0.93 | 0.91 | 0.94 | 0.97 |\n| granulocytopoietic cell | 763 | 0.91 | 0.92 | 0.94 | 0.93 | 0.00 | 0.90 | 0.89 | 0.91 | 0.94 |\n| proerythroblast | 326 | 0.84 | 0.91 | 0.85 | 0.85 | 0.00 | 0.82 | 0.80 | 0.82 | 0.89 |\n| promonocyte | 285 | 0.89 | 0.94 | 0.91 | 0.92 | 0.00 | 0.92 | 0.93 | 0.93 | 0.94 |\n| monocyte | 258 | 0.93 | 0.96 | 0.93 | 0.93 | 0.00 | 0.93 | 0.95 | 0.95 | 0.95 |\n| erythroblast | 234 | 0.88 | 0.90 | 0.92 | 0.91 | 0.00 | 0.91 | 0.89 | 0.90 | 0.92 |\n| hematopoietic precursor cell | 213 | 0.94 | 0.94 | 0.96 | 0.93 | 0.00 | 0.93 | 0.95 | 0.93 | 0.96 |\n| megakaryocyte-erythroid progenitor cell | 174 | 0.79 | 0.88 | 0.86 | 0.84 | 0.00 | 0.82 | 0.78 | 0.79 | 0.88 |\n| naive T cell | 151 | 0.89 | 0.93 | 0.91 | 0.93 | 0.00 | 0.93 | 0.92 | 0.89 | 0.94 |\n| macrophage | 97 | 0.74 | 0.88 | 0.84 | 0.87 | 0.00 | 0.84 | 0.86 | 0.85 | 0.87 |\n| precursor B cell | 91 | 0.98 | 0.99 | 0.99 | 0.98 | 0.00 | 0.98 | 0.98 | 0.98 | 0.99 |\n| immature B cell | 87 | 0.87 | 0.75 | 0.87 | 0.98 | 0.00 | 0.94 | 0.66 | 0.90 | 0.95 |\n| late pro-B cell | 48 | 0.99 | 0.99 | 0.97 | 0.95 | 0.00 | 0.96 | 0.96 | 0.98 | 0.99 |\n| plasma cell | 45 | 0.93 | 0.93 | 0.94 | 0.84 | 0.00 | 0.92 | 0.96 | 0.87 | 0.97 |\n| erythroid progenitor cell, mammalian | 33 | 0.97 | 0.00 | 0.79 | 0.83 | 0.00 | 0.88 | 0.94 | 0.88 | 0.97 |\n| naive B cell | 42 | 0.99 | 0.98 | 0.99 | 0.99 | 0.00 | 0.99 | 0.99 | 0.98 | 1.00 |\n| natural killer cell | 9 | 0.72 | 0.89 | 0.88 | 0.67 | 0.00 | 0.55 | 0.78 | 0.80 | 0.86 |\n| basophil | 15 | 0.84 | 0.12 | 0.74 | 0.65 | 0.00 | 0.83 | 0.76 | 0.84 | 0.88 |",
+    "ref_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| granulocyte | 9905 | 0.94 | 0.96 | 0.95 | 0.96 | 0.00 | 0.94 | 0.92 | 0.94 | 0.97 |\n| granulocytopoietic cell | 6836 | 0.92 | 0.92 | 0.95 | 0.95 | 0.00 | 0.90 | 0.90 | 0.92 | 0.95 |\n| proerythroblast | 3287 | 0.85 | 0.89 | 0.87 | 0.89 | 0.00 | 0.86 | 0.83 | 0.86 | 0.92 |\n| promonocyte | 2542 | 0.91 | 0.94 | 0.95 | 0.95 | 0.00 | 0.94 | 0.94 | 0.94 | 0.96 |\n| monocyte | 2135 | 0.93 | 0.96 | 0.95 | 0.96 | 0.00 | 0.94 | 0.95 | 0.95 | 0.96 |\n| erythroblast | 2126 | 0.90 | 0.91 | 0.94 | 0.95 | 0.00 | 0.93 | 0.92 | 0.92 | 0.95 |\n| hematopoietic precursor cell | 1931 | 0.95 | 0.96 | 0.97 | 0.97 | 0.00 | 0.96 | 0.97 | 0.97 | 0.98 |\n| megakaryocyte-erythroid progenitor cell | 1700 | 0.80 | 0.88 | 0.90 | 0.90 | 0.00 | 0.84 | 0.82 | 0.84 | 0.89 |\n| naive T cell | 1417 | 0.92 | 0.94 | 0.95 | 0.96 | 0.00 | 0.94 | 0.95 | 0.95 | 0.96 |\n| macrophage | 891 | 0.80 | 0.91 | 0.90 | 0.92 | 0.00 | 0.89 | 0.92 | 0.91 | 0.93 |\n| precursor B cell | 824 | 0.97 | 0.99 | 0.99 | 0.98 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |\n| immature B cell | 739 | 0.86 | 0.77 | 0.90 | 0.98 | 0.00 | 0.95 | 0.73 | 0.94 | 0.98 |\n| late pro-B cell | 484 | 0.99 | 0.98 | 0.98 | 0.99 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |\n| plasma cell | 400 | 0.94 | 0.93 | 0.96 | 0.91 | 0.00 | 0.92 | 0.97 | 0.96 | 0.97 |\n| erythroid progenitor cell, mammalian | 376 | 0.94 | 0.00 | 0.86 | 0.90 | 0.00 | 0.86 | 0.91 | 0.90 | 0.95 |\n| naive B cell | 356 | 0.96 | 0.98 | 0.98 | 0.98 | 0.00 | 0.98 | 0.99 | 0.99 | 0.99 |\n| natural killer cell | 140 | 0.77 | 0.89 | 0.92 | 0.83 | 0.00 | 0.78 | 0.87 | 0.94 | 0.93 |\n| basophil | 109 | 0.87 | 0.35 | 0.92 | 0.90 | 0.00 | 0.91 | 0.85 | 0.97 | 0.95 |"
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celltypist.pkl

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checkpoint

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harmony_knn_classifier.joblib

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obo_dag.joblib

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pynndescent_index.joblib

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scanvi/model.pt

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scvi/model.pt

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scvi_knn_classifier.joblib

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svm_classifier_cuml.joblib

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xgboost_classifier.model

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