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@@ -33,3 +33,4 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
 *.zip filter=lfs diff=lfs merge=lfs -text
 *.zst filter=lfs diff=lfs merge=lfs -text
 *tfevents* filter=lfs diff=lfs merge=lfs -text
+OnClass.data-00000-of-00001 filter=lfs diff=lfs merge=lfs -text

OnClass.data-00000-of-00001

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OnClass.npz

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accuracies.json

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+{
+    "query_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| endothelial cell | 223 | 0.99 | 0.99 | 0.99 | 0.98 | 0.00 | 0.98 | 1.00 | 1.00 | 1.00 |\n| oligodendrocyte | 197 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 0.99 | 1.00 | 0.99 | 0.99 |\n| astrocyte | 60 | 0.96 | 0.98 | 0.97 | 0.92 | 0.00 | 0.94 | 0.98 | 0.97 | 0.98 |\n| brain pericyte | 46 | 0.98 | 0.98 | 1.00 | 0.93 | 0.00 | 0.97 | 1.00 | 1.00 | 1.00 |\n| neuron | 40 | 0.93 | 0.94 | 0.89 | 0.64 | 0.00 | 0.76 | 0.95 | 0.91 | 0.93 |\n| oligodendrocyte precursor cell | 34 | 0.97 | 0.97 | 0.97 | 0.97 | 0.00 | 0.99 | 0.99 | 0.96 | 0.97 |\n| interneuron | 26 | 0.96 | 0.95 | 0.91 | 0.56 | 0.00 | 0.70 | 0.96 | 0.90 | 0.96 |\n| neuroepithelial stem cell | 15 | 0.87 | 0.93 | 0.90 | 0.65 | 0.00 | 0.74 | 1.00 | 0.90 | 0.97 |\n| microglial cell | 12 | 1.00 | 0.96 | 0.92 | 0.48 | 0.00 | 0.92 | 1.00 | 0.96 | 1.00 |\n| CD8-positive, alpha-beta T cell | 16 | 0.91 | 0.91 | 0.91 | 0.91 | 0.00 | 0.74 | 0.88 | 0.97 | 0.94 |\n| medium spiny neuron | 10 | 0.95 | 0.91 | 0.91 | 0.52 | 0.00 | 0.80 | 0.95 | 0.91 | 0.91 |\n| neural stem cell | 10 | 0.75 | 0.67 | 0.71 | 0.90 | 0.00 | 0.95 | 0.84 | 0.74 | 0.78 |\n| T cell | 3 | 0.57 | 0.67 | 0.67 | 0.00 | 0.00 | 0.25 | 0.57 | 0.80 | 0.67 |\n| ependymal cell | 6 | 0.86 | 1.00 | 1.00 | 0.67 | 0.00 | 0.80 | 1.00 | 0.83 | 1.00 |\n| Bergmann glial cell | 5 | 0.75 | 0.89 | 0.89 | 0.00 | 0.00 | 0.57 | 0.89 | 0.89 | 0.89 |\n| macrophage | 1 | 1.00 | 0.00 | 1.00 | 0.00 | 0.00 | 0.50 | 1.00 | 1.00 | 1.00 |\n| mature NK T cell | 2 | 0.00 | 0.00 | 0.50 | 0.00 | 0.00 | 0.57 | 0.50 | 1.00 | 0.67 |",
+    "ref_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| endothelial cell | 2009 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 0.98 | 1.00 | 1.00 | 1.00 |\n| oligodendrocyte | 1896 | 0.99 | 1.00 | 1.00 | 1.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| astrocyte | 527 | 0.96 | 0.97 | 0.98 | 0.96 | 0.00 | 0.96 | 1.00 | 1.00 | 0.99 |\n| brain pericyte | 438 | 0.98 | 0.98 | 1.00 | 0.97 | 0.00 | 0.97 | 1.00 | 1.00 | 1.00 |\n| neuron | 435 | 0.95 | 0.91 | 0.90 | 0.82 | 0.00 | 0.74 | 1.00 | 0.99 | 0.98 |\n| oligodendrocyte precursor cell | 278 | 0.98 | 0.97 | 0.99 | 0.97 | 0.00 | 0.99 | 1.00 | 1.00 | 1.00 |\n| interneuron | 213 | 0.95 | 0.90 | 0.90 | 0.70 | 0.00 | 0.74 | 1.00 | 1.00 | 0.98 |\n| neuroepithelial stem cell | 136 | 0.83 | 0.85 | 0.88 | 0.76 | 0.00 | 0.77 | 1.00 | 0.99 | 0.98 |\n| microglial cell | 126 | 0.97 | 0.95 | 0.93 | 0.77 | 0.00 | 0.95 | 0.99 | 0.99 | 0.99 |\n| CD8-positive, alpha-beta T cell | 88 | 0.86 | 0.86 | 0.92 | 0.77 | 0.00 | 0.95 | 1.00 | 1.00 | 0.97 |\n| medium spiny neuron | 93 | 0.99 | 0.98 | 0.93 | 0.81 | 0.00 | 0.95 | 1.00 | 1.00 | 0.99 |\n| neural stem cell | 86 | 0.88 | 0.87 | 0.96 | 0.93 | 0.00 | 0.97 | 0.99 | 0.99 | 0.99 |\n| T cell | 62 | 0.72 | 0.66 | 0.75 | 0.53 | 0.00 | 0.85 | 1.00 | 1.00 | 0.97 |\n| ependymal cell | 49 | 0.91 | 0.97 | 0.99 | 0.85 | 0.00 | 0.85 | 1.00 | 0.99 | 0.98 |\n| Bergmann glial cell | 49 | 0.90 | 0.95 | 0.94 | 0.62 | 0.00 | 0.85 | 1.00 | 1.00 | 0.98 |\n| macrophage | 24 | 0.60 | 0.00 | 0.73 | 0.56 | 0.00 | 0.88 | 1.00 | 1.00 | 0.98 |\n| mature NK T cell | 15 | 0.00 | 0.00 | 0.77 | 0.00 | 0.00 | 0.88 | 1.00 | 1.00 | 0.80 |"
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checkpoint

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scanvi/model.pt

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scvi/model.pt

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