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README.md

@@ -6,7 +6,7 @@ tags:
 - genomics
 - single-cell
 - anndata_version:0.11.3
-- python_version:3.11.11
+- python_version:3.11.12
 - popV
 - 'tissue: diaphragm'
 ---
@@ -32,23 +32,23 @@ computed on a 10% random subset of the data that was not used for training.
 
 | Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |
 | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
-| skeletal muscle satellite cell | 91 | 0.98 | 0.98 | 0.99 | 0.96 | 0.00 | 0.98 | 0.98 | 0.98 | 0.98 |
-| mesenchymal stem cell | 49 | 0.99 | 0.99 | 1.00 | 0.98 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |
-| endothelial cell | 25 | 0.98 | 0.94 | 0.96 | 0.81 | 0.00 | 0.94 | 1.00 | 0.98 | 0.98 |
-| B cell | 13 | 0.96 | 0.77 | 0.90 | 0.78 | 0.00 | 0.78 | 0.92 | 0.96 | 0.96 |
-| macrophage | 5 | 0.91 | 0.75 | 1.00 | 0.29 | 0.00 | 0.83 | 0.91 | 0.91 | 0.91 |
-| T cell | 3 | 1.00 | 0.80 | 1.00 | 0.00 | 0.00 | 0.33 | 0.86 | 1.00 | 1.00 |
+| skeletal muscle satellite cell | 97 | 0.99 | 0.97 | 0.98 | 0.91 | 0.00 | 0.98 | 0.99 | 0.99 | 0.99 |
+| mesenchymal stem cell | 48 | 0.99 | 0.98 | 1.00 | 0.80 | 0.00 | 0.98 | 0.99 | 0.98 | 1.00 |
+| endothelial cell | 20 | 0.98 | 0.86 | 0.92 | 0.86 | 0.00 | 0.93 | 0.98 | 0.98 | 0.98 |
+| B cell | 9 | 0.89 | 0.82 | 0.95 | 0.84 | 0.00 | 0.95 | 1.00 | 0.95 | 0.95 |
+| macrophage | 7 | 0.86 | 0.73 | 1.00 | 0.73 | 0.00 | 0.86 | 1.00 | 1.00 | 1.00 |
+| T cell | 5 | 1.00 | 0.89 | 0.75 | 0.00 | 0.00 | 0.80 | 1.00 | 0.75 | 0.89 |
 
 The train accuracies are computed on the training data.
 
 | Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |
 | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
-| skeletal muscle satellite cell | 801 | 0.98 | 0.96 | 0.99 | 0.97 | 0.00 | 0.98 | 1.00 | 0.99 | 0.99 |
-| mesenchymal stem cell | 445 | 0.99 | 0.96 | 0.99 | 0.98 | 0.00 | 0.99 | 1.00 | 1.00 | 1.00 |
-| endothelial cell | 193 | 0.95 | 0.91 | 0.97 | 0.92 | 0.00 | 0.96 | 1.00 | 0.99 | 0.99 |
-| B cell | 110 | 0.92 | 0.80 | 0.95 | 0.83 | 0.00 | 0.98 | 1.00 | 1.00 | 1.00 |
-| macrophage | 71 | 0.88 | 0.73 | 0.96 | 0.72 | 0.00 | 0.92 | 0.98 | 0.99 | 0.95 |
-| T cell | 52 | 0.90 | 0.76 | 0.92 | 0.66 | 0.00 | 0.92 | 0.99 | 0.98 | 0.97 |
+| skeletal muscle satellite cell | 795 | 0.98 | 0.97 | 0.99 | 0.97 | 0.00 | 0.97 | 0.99 | 0.99 | 0.99 |
+| mesenchymal stem cell | 446 | 0.99 | 0.97 | 0.99 | 0.96 | 0.00 | 0.98 | 1.00 | 1.00 | 1.00 |
+| endothelial cell | 198 | 0.97 | 0.92 | 0.96 | 0.92 | 0.00 | 0.96 | 0.99 | 0.99 | 0.99 |
+| B cell | 114 | 0.95 | 0.83 | 0.93 | 0.80 | 0.00 | 0.99 | 1.00 | 1.00 | 0.99 |
+| macrophage | 69 | 0.92 | 0.74 | 0.92 | 0.73 | 0.00 | 0.89 | 0.99 | 0.99 | 0.98 |
+| T cell | 50 | 0.89 | 0.85 | 0.91 | 0.55 | 0.00 | 0.92 | 0.98 | 0.97 | 0.95 |
 
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