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Update app.py
Browse files
app.py
CHANGED
@@ -15,24 +15,11 @@ st.title("DICOM Image Viewer")
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# Upload a ZIP file containing DICOM slices
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uploaded_zip_file = st.file_uploader("Upload a ZIP file containing DICOM slices", type=["zip"])
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dicom_data = pydicom.dcmread(dicom_files[selected_slice])
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# Display the DICOM image
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plt.imshow(dicom_data.pixel_array, cmap=plt.cm.bone)
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plt.axis("off")
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plt.title("DICOM Image")
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plt.tight_layout()
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return plt
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if uploaded_zip_file is not None:
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try:
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# Create a temporary directory to unzip the files
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command = "chmod +x install.sh"
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subprocess.run(command, shell=True, check=True)
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@@ -44,8 +31,25 @@ if uploaded_zip_file is not None:
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try:
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subprocess.run(command, shell=True, check=True)
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print("Script 'install.sh' has started running.")
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except subprocess.CalledProcessError as e:
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print(f"Error while running the script: {e}")
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temp_dir = "/home/user/app/C2C/temp_dicom_dir"
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@@ -70,9 +74,11 @@ if uploaded_zip_file is not None:
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# Display the DICOM image using the cached function
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plt = display_dicom_image(selected_slice, dicom_files)
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st.pyplot(plt)
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command = "chmod +x inference.sh"
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try:
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@@ -124,12 +130,6 @@ if uploaded_zip_file is not None:
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else:
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st.warning("No subdirectories or folders found inside the 'outputs' directory.")
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except Exception as e:
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st.error(f"Error: {str(e)}")
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# finally:
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# shutil.rmtree(temp_dir)
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st.write("Upload a ZIP file containing DICOM slices to view the images.")
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# Upload a ZIP file containing DICOM slices
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uploaded_zip_file = st.file_uploader("Upload a ZIP file containing DICOM slices", type=["zip"])
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st.write("Upload a ZIP file containing DICOM slices to view the images.")
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@st.cache_resource
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def install_dependencies():
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if not install_script_executed:
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command = "chmod +x install.sh"
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try:
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subprocess.run(command, shell=True, check=True)
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try:
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subprocess.run(command, shell=True, check=True)
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print("Script 'install.sh' has started running.")
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install_script_executed = True
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except subprocess.CalledProcessError as e:
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print(f"Error while running the script: {e}")
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# Function to read and display the DICOM image
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@st.cache_resource
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def display_dicom_image(selected_slice, dicom_files):
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dicom_data = pydicom.dcmread(dicom_files[selected_slice])
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# Display the DICOM image
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plt.imshow(dicom_data.pixel_array, cmap=plt.cm.bone)
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plt.axis("off")
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plt.title("DICOM Image")
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plt.tight_layout()
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return plt
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if uploaded_zip_file is not None:
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try:
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install_dependencies()
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temp_dir = "/home/user/app/C2C/temp_dicom_dir"
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# Display the DICOM image using the cached function
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plt = display_dicom_image(selected_slice, dicom_files)
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st.pyplot(plt)
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except Exception as e:
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st.error(f"Error: {str(e)}")
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if st.button("Analyze"):
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command = "chmod +x inference.sh"
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try:
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else:
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st.warning("No subdirectories or folders found inside the 'outputs' directory.")
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# finally:
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# shutil.rmtree(temp_dir)
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