mtDNALocation / output.json
VyLala's picture
update new codes
7fc87fe verified
{
"Detailed_Results": [
[
"MF362736.1 (accession number)",
"NCBI",
"NCBI",
"Armenia",
"",
"",
"/geo_loc_name=\"Armenia\""
],
[
"MF362736.1 (accession number)",
"QAModel",
"<a href=\"https://doi.org/10.1016/j.cub.2017.05.087\" target=\"_blank\" style=\"color: blue; text-decoration: underline;\">https://doi.org/10.1016/j.cub.2017.05.087</a>",
"Sample ID not found",
"",
"",
"Sample ID not found."
],
[
"MF362736.1 (accession number)",
"haplogroup",
"The region of haplogroup is inferred\nby using this source: Unknown",
"",
"Sample",
"Unknown",
""
],
[
"rise396_mt (isolate of accession)",
"QAModel",
"<a href=\"https://doi.org/10.1016/j.cub.2017.05.087\" target=\"_blank\" style=\"color: blue; text-decoration: underline;\">https://doi.org/10.1016/j.cub.2017.05.087</a>",
"Sample ID not found",
"",
"",
"Sample ID not found."
],
[
"rise396_mt (isolate of accession)",
"haplogroup",
"The region of haplogroup is inferred\nby using this source: Unknown",
"",
"Sample",
"Unknown",
""
],
[
"MF362738.1 (accession number)",
"NCBI",
"NCBI",
"Armenia",
"",
"",
"/geo_loc_name=\"Armenia\""
],
[
"MF362738.1 (accession number)",
"QAModel",
"<a href=\"https://doi.org/10.1016/j.cub.2017.05.087\" target=\"_blank\" style=\"color: blue; text-decoration: underline;\">https://doi.org/10.1016/j.cub.2017.05.087</a>",
"Sample ID not found",
"",
"",
"Sample ID not found."
],
[
"MF362738.1 (accession number)",
"haplogroup",
"The region of haplogroup is inferred\nby using this source: Unknown",
"",
"Sample",
"Unknown",
""
],
[
"rise407_mt (isolate of accession)",
"QAModel",
"<a href=\"https://doi.org/10.1016/j.cub.2017.05.087\" target=\"_blank\" style=\"color: blue; text-decoration: underline;\">https://doi.org/10.1016/j.cub.2017.05.087</a>",
"Sample ID not found",
"",
"",
"Sample ID not found."
],
[
"rise407_mt (isolate of accession)",
"haplogroup",
"The region of haplogroup is inferred\nby using this source: Unknown",
"",
"Sample",
"Unknown",
""
],
[
"MF362739.1 (accession number)",
"NCBI",
"NCBI",
"Armenia",
"",
"",
"/geo_loc_name=\"Armenia\""
],
[
"MF362739.1 (accession number)",
"QAModel",
"<a href=\"https://doi.org/10.1016/j.cub.2017.05.087\" target=\"_blank\" style=\"color: blue; text-decoration: underline;\">https://doi.org/10.1016/j.cub.2017.05.087</a>",
"Sample ID not found",
"",
"",
"Sample ID not found."
],
[
"MF362739.1 (accession number)",
"haplogroup",
"The region of haplogroup is inferred\nby using this source: Unknown",
"",
"Sample",
"Unknown",
""
],
[
"rise408_mt (isolate of accession)",
"QAModel",
"<a href=\"https://doi.org/10.1016/j.cub.2017.05.087\" target=\"_blank\" style=\"color: blue; text-decoration: underline;\">https://doi.org/10.1016/j.cub.2017.05.087</a>",
"Sample ID not found",
"",
"",
"Sample ID not found."
],
[
"rise408_mt (isolate of accession)",
"haplogroup",
"The region of haplogroup is inferred\nby using this source: Unknown",
"",
"Sample",
"Unknown",
""
],
[
"KU131308 (accession number)",
"NCBI",
"NCBI",
"Brunei",
"",
"",
"/geo_loc_name=\"Brunei\""
],
[
"KU131308 (accession number)",
"QAModel",
"<a href=\"https://doi.org/10.1007/s00439-015-1620-z\" target=\"_blank\" style=\"color: blue; text-decoration: underline;\">https://doi.org/10.1007/s00439-015-1620-z</a>",
"GenBank",
"",
"",
"t (unavailable at the start of this study). We performed whole-mtDNA sequencing as previously described (Torroni et al. 2001) using an ABI 48-capillary 3730 DNA Analyser (Taipei) an ABI 16-capillary 3130XL DNA Analyser (Leeds) and an ABI 16-capillary 3100 DNA Analyser (Porto). Details on the new and"
],
[
"KU131308 (accession number)",
"haplogroup",
"The region of haplogroup is inferred\nby using this source: EMPOP",
"",
"M7",
"East Asia",
""
],
[
"KU131308 (accession number)",
"QAModel",
"<a href=\"https://static-content.springer.com/esm/art%3A10.1007%2Fs00439-015-1620-z/MediaObjects/439_2015_1620_MOESM1_ESM.pdf\" target=\"_blank\" style=\"color: blue; text-decoration: underline;\">https://static-content.springer.com/esm/art%3A10.1007%2Fs00439-015-1620-z/MediaObjects/439_2015_1620_MOESM1_ESM.pdf</a>",
"Sample ID not found",
"",
"",
"Sample ID not found."
],
[
"KU131308 (accession number)",
"haplogroup",
"The region of haplogroup is inferred\nby using this source: Unknown",
"",
"Sample",
"Unknown",
""
],
[
"KU131308 (accession number)",
"QAModel",
"<a href=\"https://static-content.springer.com/esm/art%3A10.1007%2Fs00439-015-1620-z/MediaObjects/439_2015_1620_MOESM2_ESM.xls\" target=\"_blank\" style=\"color: blue; text-decoration: underline;\">https://static-content.springer.com/esm/art%3A10.1007%2Fs00439-015-1620-z/MediaObjects/439_2015_1620_MOESM2_ESM.xls</a>",
"Sample ID not found",
"",
"",
"Sample ID not found."
],
[
"KU131308 (accession number)",
"haplogroup",
"The region of haplogroup is inferred\nby using this source: Unknown",
"",
"Sample",
"Unknown",
""
],
[
"BRU18 (isolate of accession)",
"QAModel",
"<a href=\"https://doi.org/10.1007/s00439-015-1620-z\" target=\"_blank\" style=\"color: blue; text-decoration: underline;\">https://doi.org/10.1007/s00439-015-1620-z</a>",
"Sample ID not found",
"",
"",
"Sample ID not found."
],
[
"BRU18 (isolate of accession)",
"haplogroup",
"The region of haplogroup is inferred\nby using this source: Unknown",
"",
"Sample",
"Unknown",
""
],
[
"BRU18 (isolate of accession)",
"QAModel",
"<a href=\"https://static-content.springer.com/esm/art%3A10.1007%2Fs00439-015-1620-z/MediaObjects/439_2015_1620_MOESM1_ESM.pdf\" target=\"_blank\" style=\"color: blue; text-decoration: underline;\">https://static-content.springer.com/esm/art%3A10.1007%2Fs00439-015-1620-z/MediaObjects/439_2015_1620_MOESM1_ESM.pdf</a>",
"Borneo",
"",
"",
", NA18138, NA18149, NA18152, \nNA18674, NA18707 \n Chinese in Denver, \nUSA \n[86] \nNA17971, NA18124, NA18550, NA18574, NA18582, \nNA18618, NA18636, NA18638, NA18639, NA18644, \nNA18756, NA18769, NA18771 \nHan Chinese in Beijing \n[86] \nNA18755 \nBeijing Han Chinese \n[86] \nNA18940, NA18943, NA18952, NA18953"
],
[
"BRU18 (isolate of accession)",
"haplogroup",
"The region of haplogroup is inferred\nby using this source: Unknown",
"",
"Denver",
"Unknown",
""
],
[
"BRU18 (isolate of accession)",
"QAModel",
"<a href=\"https://static-content.springer.com/esm/art%3A10.1007%2Fs00439-015-1620-z/MediaObjects/439_2015_1620_MOESM2_ESM.xls\" target=\"_blank\" style=\"color: blue; text-decoration: underline;\">https://static-content.springer.com/esm/art%3A10.1007%2Fs00439-015-1620-z/MediaObjects/439_2015_1620_MOESM2_ESM.xls</a>",
"Sample ID not found",
"",
"",
"Sample ID not found."
],
[
"BRU18 (isolate of accession)",
"haplogroup",
"The region of haplogroup is inferred\nby using this source: Unknown",
"",
"Sample",
"Unknown",
""
],
[
"MW291678 (accession number)",
"NCBI",
"NCBI",
"Argentina",
"",
"",
"/geo_loc_name=\"Argentina\""
],
[
"MN006856 (accession number)",
"NCBI",
"NCBI",
"Not found",
"",
"",
"Not found"
]
],
"Summary_Text": "**MF362736.1**\n### \ud83e\udded Location Frequency Summary\nAfter counting all predicted and inferred locations:\n\n- **Armenia**: 1 times\n\n**Final Suggested Location:** \ud83d\uddfa\ufe0f **Armenia** (mentioned 1 times)\n\n---\n\n**MF362738.1**\n### \ud83e\udded Location Frequency Summary\nAfter counting all predicted and inferred locations:\n\n- **Armenia**: 1 times\n\n**Final Suggested Location:** \ud83d\uddfa\ufe0f **Armenia** (mentioned 1 times)\n\n---\n\n**MF362739.1**\n### \ud83e\udded Location Frequency Summary\nAfter counting all predicted and inferred locations:\n\n- **Armenia**: 1 times\n\n**Final Suggested Location:** \ud83d\uddfa\ufe0f **Armenia** (mentioned 1 times)\n\n---\n\n**KU131308**\n### \ud83e\udded Location Frequency Summary\nAfter counting all predicted and inferred locations:\n\n- **Brunei**: 1 times\n- **GenBank**: 1 times\n- **Borneo**: 1 times\n- **East Asia**: 1 times\n\n**Final Suggested Location:** \ud83d\uddfa\ufe0f **Brunei** (mentioned 1 times)\n\n---\n\n**MW291678**\n### \ud83e\udded Location Frequency Summary\nAfter counting all predicted and inferred locations:\n\n- **Argentina**: 1 times\n\n**Final Suggested Location:** \ud83d\uddfa\ufe0f **Argentina** (mentioned 1 times)\n\n---\n\n**MN006856**\n### \ud83e\udded Location Frequency Summary\nAfter counting all predicted and inferred locations:\n\n- **Not found**: 1 times\n\n**Final Suggested Location:** \ud83d\uddfa\ufe0f **Not found** (mentioned 1 times)",
"Ancient_Modern_Flag": "**MF362736.1**\n### \ud83c\udffa Ancient/Modern Flag\n**Ancient**\n\n_Explanation:_ Flagged as ancient due to keywords: tomb, skeleton from NCBI\n(/isolation_source=\"Tomb 6; skeleton 1\" /specimen_voucher=\"Kapan;Tomb 6; skeleton 1\" )\n\n---\n\n**MF362738.1**\n### \ud83c\udffa Ancient/Modern Flag\n**Ancient**\n\n_Explanation:_ https://doi.org/10.1016/j.cub.2017.05.087:\nMixed context, leaning ancient due to: ancient, archaeological, bronze age, iron age, tomb, skeleton, carbon dating, adna, site\n\n\n\n---\n\n**MF362739.1**\n### \ud83c\udffa Ancient/Modern Flag\n**Ancient**\n\n_Explanation:_ https://doi.org/10.1016/j.cub.2017.05.087:\nMixed context, leaning ancient due to: ancient, archaeological, bronze age, iron age, tomb, skeleton, carbon dating, adna, site\n\n\n\n---\n\n**KU131308**\n### \ud83c\udffa Ancient/Modern Flag\n**Modern**\n\n_Explanation:_ https://doi.org/10.1007/s00439-015-1620-z:\nMixed context, leaning modern due to: we analysed, new sequences, published data, sink population, genome-wide data\n\n\n\n---\n\n**MW291678**\n### \ud83c\udffa Ancient/Modern Flag\n**Ancient**\n\n_Explanation:_ Flagged as ancient due to keywords: archaeological from NCBI\n(/isolation_source=\"archaeological human bone\" )\n\n---\n\n**MN006856**\n### \ud83c\udffa Ancient/Modern Flag\n****\n\n_Explanation:_ "
}None