Update dashboard.py

dashboard.py

@@ -26,6 +26,8 @@ from bokeh.sampledata.les_mis import data
 from bokeh.io import show
 from bokeh.sampledata.les_mis import data
 import panel as pn
+pn.extension(design='material')
+
 import bokeh
 from bokeh.resources import INLINE
 from holoviews.operation.timeseries import rolling, rolling_outlier_std
@@ -52,6 +54,8 @@ entityTypesFreqMap = read_freq_map('entityTypes.tsv')
 relationTypesFreqMap = read_freq_map('relationTypes.tsv')
 topDrugEntities = read_freq_map('topDrugs.tsv')
 topConditionEntities = read_freq_map('topConditions.tsv')
+topDrugOnts = read_freq_map('topDrugOntologies.tsv')
+topConditionOnts = read_freq_map('topConditionOntologies.tsv')
 
 
 grouping_filtered = pd.read_csv(os.path.join(data, 'drugReviewsCausal_relations.tsv'), sep="	")
@@ -76,6 +80,13 @@ def create_ent_bar_charts(ents, **kwargs):
     dictionary = topConditionEntities
     return hv.Bars(dictionary, hv.Dimension('Condition Entities'), 'Frequency').opts(framewise=True, xrotation=45,width=1200, height=600)
 
+def create_ontology_bar_charts(ents, **kwargs):
+  if ents=='Drug':
+    dictionary = topDrugOnts
+    return hv.Bars(dictionary, hv.Dimension('Drug Ontologies'), 'Frequency').opts( framewise=True, xrotation=45,width=1200, height=600)
+  elif ents=='Condition':
+    dictionary = topConditionOnts
+    return hv.Bars(dictionary, hv.Dimension('Condition Ontologies'), 'Frequency').opts(framewise=True, xrotation=45,width=1200, height=600)
 
 ############################# WIDGETS & CALLBACK ###########################################
 
@@ -112,7 +123,8 @@ def filter_triples(rel):
 button1 = pn.widgets.Button(name="Introduction", button_type="warning", icon="file-info", styles={"width": "100%"})
 button2 = pn.widgets.Button(name="Entity/Relation Types:", button_type="warning",  icon="chart-histogram", styles={"width": "100%"})
 button3 = pn.widgets.Button(name="Top Key Entities", button_type="warning", icon="chart-bar", styles={"width": "100%"})
-button4 = pn.widgets.Button(name="Causal Relation Chord Diagrams", button_type="warning", icon="chart-dots-filled", styles={"width": "100%"})
+button4 = pn.widgets.Button(name="Ontology Coverage", button_type="warning", icon="chart-dots-filled", styles={"width": "100%"})
+button5 = pn.widgets.Button(name="Causal Relation Chord Diagrams", button_type="warning", icon="chart-dots-filled", styles={"width": "100%"})
 
 
 entRelsButton = pn.widgets.RadioButtonGroup(name='### Select', options=['Entity','Relation'], value = 'Entity' )
@@ -141,6 +153,7 @@ button1.on_click(lambda event: show_page("Page1"))
 button2.on_click(lambda event: show_page("Page2"))
 button3.on_click(lambda event: show_page("Page3"))
 button4.on_click(lambda event: show_page("Page4"))
+button5.on_click(lambda event: show_page("Page5"))
 
 
 ### CREATE PAGE LAYOUTS
@@ -178,8 +191,13 @@ def CreatePage3():
         entTypeButton,
         pn.bind(create_ent_bar_charts, entTypeButton),
         align="center", )
-
 def CreatePage4():
+    return pn.Column(
+        pn.pane.Markdown("## Bio Ontology Coverage "),
+        entTypeButton,
+        pn.bind(create_ent_bar_charts, entTypeButton),
+        align="center", )
+def CreatePage5():
     return pn.Column(
         pn.pane.Markdown("## Causal Relation Chord Diagrams"),
         pn.Row(relationTypeButton, pn.bind(filter_triples, relationTypeButton)),
@@ -190,6 +208,7 @@ mapping = {
     "Page2": CreatePage2(),
     "Page3": CreatePage3(),
     "Page4": CreatePage4(),
+    "Page5": CreatePage5(),
 }
 
 #################### SIDEBAR LAYOUT ##########################
@@ -205,7 +224,7 @@ template = pn.template.BootstrapTemplate(
     title=" CausalDrugsKG_Dashboard ",
     sidebar=[sidebar],
     main=[main_area],
-    header_background="black",
+    #header_background="black",
     #site="Charting the Landscape of Digital Health",
     theme=pn.template.DarkTheme,
     sidebar_width=270, ## Default is 330