Upload folder using huggingface_hub
Browse files- adaptation_plan.json +78 -0
- checkpoint_final.pth +3 -0
adaptation_plan.json
ADDED
@@ -0,0 +1,78 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
{
|
2 |
+
"architecture_plans": {
|
3 |
+
"arch_class_name": "ResEncL",
|
4 |
+
"arch_kwargs": null,
|
5 |
+
"arch_kwargs_requiring_import": null
|
6 |
+
},
|
7 |
+
"key_to_encoder": "encoder.stages",
|
8 |
+
"key_to_lpe": null,
|
9 |
+
"key_to_stem": "encoder.stem",
|
10 |
+
"keys_to_in_proj": [
|
11 |
+
"encoder.stem.convs.0.conv",
|
12 |
+
"encoder.stem.convs.0.all_modules.0"
|
13 |
+
],
|
14 |
+
"pretrain_num_input_channels": 1,
|
15 |
+
"pretrain_plan": {
|
16 |
+
"configurations": {
|
17 |
+
"onemmiso": {
|
18 |
+
"data_identifier": "nnsslPlans_onemmiso",
|
19 |
+
"normalization_schemes": [
|
20 |
+
"ZScoreNormalization"
|
21 |
+
],
|
22 |
+
"patch_size": [
|
23 |
+
160,
|
24 |
+
160,
|
25 |
+
160
|
26 |
+
],
|
27 |
+
"preprocessor_name": "DefaultPreprocessor",
|
28 |
+
"resampling_fn_data": "resample_data_or_seg_to_shape",
|
29 |
+
"resampling_fn_data_kwargs": {
|
30 |
+
"force_separate_z": null,
|
31 |
+
"is_seg": false,
|
32 |
+
"order": 3,
|
33 |
+
"order_z": 0
|
34 |
+
},
|
35 |
+
"resampling_fn_mask": "resample_data_or_seg_to_shape",
|
36 |
+
"resampling_fn_mask_kwargs": {
|
37 |
+
"force_separate_z": null,
|
38 |
+
"is_seg": true,
|
39 |
+
"order": 1,
|
40 |
+
"order_z": 0
|
41 |
+
},
|
42 |
+
"spacing": [
|
43 |
+
1,
|
44 |
+
1,
|
45 |
+
1
|
46 |
+
],
|
47 |
+
"spacing_style": "onemmiso",
|
48 |
+
"use_mask_for_norm": [
|
49 |
+
false
|
50 |
+
]
|
51 |
+
}
|
52 |
+
},
|
53 |
+
"dataset_name": "Dataset042_ULS23",
|
54 |
+
"experiment_planner_used": "ExperimentPlanner",
|
55 |
+
"image_reader_writer": "SimpleITKIO",
|
56 |
+
"original_median_spacing_after_transp": [
|
57 |
+
1.5,
|
58 |
+
0.7949219942092896,
|
59 |
+
0.7949219942092896
|
60 |
+
],
|
61 |
+
"plans_name": "nnsslPlans",
|
62 |
+
"transpose_backward": [
|
63 |
+
0,
|
64 |
+
1,
|
65 |
+
2
|
66 |
+
],
|
67 |
+
"transpose_forward": [
|
68 |
+
0,
|
69 |
+
1,
|
70 |
+
2
|
71 |
+
]
|
72 |
+
},
|
73 |
+
"recommended_downstream_patchsize": [
|
74 |
+
160,
|
75 |
+
160,
|
76 |
+
160
|
77 |
+
]
|
78 |
+
}
|
checkpoint_final.pth
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:6fb3d25855ee960c9801654e7ee0cfdfa51b3755d2e98e280cb8ff454298a1a9
|
3 |
+
size 838195868
|