GutBrainIE_NER_v0

This model is a fine-tuned version of microsoft/BiomedNLP-BiomedBERT-base-uncased-abstract-fulltext on an unknown dataset. It achieves the following results on the evaluation set:

• Loss: 0.2987
• Precision: 0.6420
• Recall: 0.6553
• F1: 0.6486
• Accuracy: 0.9122

Model description

More information needed

Intended uses & limitations

More information needed

Training and evaluation data

More information needed

Training procedure

Training hyperparameters

The following hyperparameters were used during training:

• learning_rate: 2e-05
• train_batch_size: 16
• eval_batch_size: 16
• seed: 42
• optimizer: Use OptimizerNames.ADAMW_TORCH with betas=(0.9,0.999) and epsilon=1e-08 and optimizer_args=No additional optimizer arguments
• lr_scheduler_type: linear
• num_epochs: 5

Training results

Training Loss	Epoch	Step	Validation Loss	Precision	Recall	F1	Accuracy
No log	1.0	92	0.5058	0.6222	0.4050	0.4906	0.8694
No log	2.0	184	0.3517	0.6175	0.5733	0.5946	0.8999
No log	3.0	276	0.3121	0.6506	0.6238	0.6369	0.9087
No log	4.0	368	0.3015	0.6387	0.6374	0.6380	0.9107
No log	5.0	460	0.2987	0.6420	0.6553	0.6486	0.9122

Framework versions

• Transformers 4.49.0
• Pytorch 2.6.0+cu124
• Datasets 3.4.1
• Tokenizers 0.21.1