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Geneformer

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17 contributors

History: 79 commits

Christina Theodoris

Add fine-tuned CellClassifier for cardiomyopathy

1786b44 almost 2 years ago

examples
Update isp to allow modeling single perturbation in multiple cells as batches almost 2 years ago
fine_tuned_models
Add fine-tuned CellClassifier for cardiomyopathy almost 2 years ago
geneformer-12L-30M
Upload 12 layer Geneformer model about 2 years ago
geneformer
Add error for no files found and suppress loompy import warning almost 2 years ago
.gitattributes

1.24 kB

Add gene name : Ensembl ID dictionary about 2 years ago
.gitignore

3.08 kB

Add gitignore file about 2 years ago
MANIFEST.in

127 Bytes

Fixes to stats and adding gene dict attempt number 2 (#13) about 2 years ago
README.md

5.15 kB

Update manuscript link to SharedIt about 2 years ago
config.json

565 Bytes

upload Geneformer 6L-30M config over 3 years ago
pytorch_model.bin
Detected Pickle imports (4)
- "torch.LongStorage",
- "collections.OrderedDict",
- "torch.FloatStorage",
- "torch._utils._rebuild_tensor_v2"
What is a pickle import?
41.2 MB
LFS

upload Geneformer 6L-30M over 3 years ago
setup.py

637 Bytes

Add setup.py almost 3 years ago
training_args.bin
Detected Pickle imports (4)
- "transformers.training_args.TrainingArguments",
- "transformers.trainer_utils.SchedulerType",
- "torch.device",
- "transformers.trainer_utils.IntervalStrategy"
How to fix it?
2.61 kB
LFS

upload training args for Geneformer 6L-30M over 3 years ago