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Geneformer

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17 contributors

History: 203 commits

Christina Theodoris

ensure gene class dict only inverted when using gene classifier

54b408b 5 months ago

docs
move dict loading to function in eval utils 10 months ago
examples
further emphasize different token dictionaries in examples 7 months ago
fine_tuned_models
update with 12L and 20L i4096 gc95M models, multitask and quantiz code 11 months ago
geneformer
ensure gene class dict only inverted when using gene classifier 5 months ago
gf-12L-30M-i2048
update with 12L and 20L i4096 gc95M models, multitask and quantiz code 11 months ago
gf-12L-95M-i4096
update with 12L and 20L i4096 gc95M models, multitask and quantiz code 11 months ago
gf-12L-95M-i4096_CLcancer
update with 12L and 20L i4096 gc95M models, multitask and quantiz code 11 months ago
gf-20L-95M-i4096
update with 12L and 20L i4096 gc95M models, multitask and quantiz code 11 months ago
gf-6L-30M-i2048
update with 12L and 20L i4096 gc95M models, multitask and quantiz code 11 months ago
.gitattributes

1.27 kB

precommit formatting 11 months ago
.gitignore

3.08 kB

Add gitignore file about 2 years ago
.pre-commit-config.yaml

737 Bytes

Add pre-commit config over 1 year ago
.readthedocs.yaml

396 Bytes

update readthedocs.yaml over 1 year ago
MANIFEST.in

195 Bytes

update setup with req and manifest with updated filenames 11 months ago
README.md

8.46 kB

Adding tags to the model (#448) 8 months ago
config.json

591 Bytes

update with 12L and 20L i4096 gc95M models, multitask and quantiz code 11 months ago
generation_config.json

90 Bytes

update with 12L and 20L i4096 gc95M models, multitask and quantiz code 11 months ago
model.safetensors

152 MB
LFS

update with 12L and 20L i4096 gc95M models, multitask and quantiz code 11 months ago
requirements.txt

362 Bytes

update transformers version to match pretrainer using accelerate 8 months ago
setup.py

1.06 kB

Add find_packages to automatically include mtl and subpackages in setup.py (#410) 10 months ago
training_args.bin
Detected Pickle imports (8)
- "transformers.trainer_utils.SchedulerType",
- "transformers.training_args.OptimizerNames",
- "accelerate.utils.dataclasses.DistributedType",
- "transformers.trainer_utils.HubStrategy",
- "torch.device",
- "transformers.trainer_utils.IntervalStrategy",
- "transformers.training_args.TrainingArguments",
- "accelerate.state.PartialState"
How to fix it?
4.92 kB
LFS

update with 12L and 20L i4096 gc95M models, multitask and quantiz code 11 months ago