Zeinab321/Mistral-Merged
			Text Generation
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				4B
			• 
	
				Updated
					
				
				• 
					
					2
				
	
				
				
| input
				 stringlengths 20 285k | output
				 stringlengths 20 285k | 
|---|---|
| 
	    public static void beforeClass() throws Exception {
        server = new DummyServer("localhost", 6999);
        server.start();
        server.register("my-app", "my-module", null, EchoBean.class.getSimpleName(), new EchoBean());
        final Endpoint endpoint = Remoting.createEndpoint("endpoint", Executors.newSingleThreadExecutor(), OptionMap.EMPTY);
        final Xnio xnio = Xnio.getInstance();
        final Registration registration = endpoint.addConnectionProvider("remote", new RemoteConnectionProviderFactory(xnio), OptionMap.create(Options.SSL_ENABLED, false));
        final IoFuture<Connection> futureConnection = endpoint.connect(new URI("remote://localhost:6999"), OptionMap.create(Options.SASL_POLICY_NOANONYMOUS, Boolean.FALSE), new AnonymousCallbackHandler());
        connection = get(futureConnection, 5, TimeUnit.SECONDS);
    }
 | 
	    public static void beforeClass() throws Exception {
        server = new DummyServer("localhost", 6999);
        server.start();
        server.register("my-app", "my-module", "", EchoBean.class.getSimpleName(), new EchoBean());
        final Endpoint endpoint = Remoting.createEndpoint("endpoint", Executors.newSingleThreadExecutor(), OptionMap.EMPTY);
        final Xnio xnio = Xnio.getInstance();
        final Registration registration = endpoint.addConnectionProvider("remote", new RemoteConnectionProviderFactory(xnio), OptionMap.create(Options.SSL_ENABLED, false));
        final IoFuture<Connection> futureConnection = endpoint.connect(new URI("remote://localhost:6999"), OptionMap.create(Options.SASL_POLICY_NOANONYMOUS, Boolean.FALSE), new AnonymousCallbackHandler());
        connection = get(futureConnection, 5, TimeUnit.SECONDS);
    }
 | 
| 
	    public void testShades() throws IOException {
        String mvn = System.getProperty("path.to.mvn", "mvn");
        String version = BPMLocalTest.getBonitaVersion();
        String thePom = getPom(version);
        File file = new File("shadeTester");
        file.mkdir();
        String outputOfMaven;
        try {
            File file2 = new File(file, "pom.xml");
            IOUtil.write(file2, thePom);
            System.out.println("building " + file2.getAbsolutePath());
            System.out.println("Run mvn in " + file.getAbsolutePath());
            Process exec = Runtime.getRuntime().exec(mvn + " dependency:tree", new String[] {}, file);
            InputStream inputStream = exec.getInputStream();
            exec.getOutputStream().close();
            exec.getErrorStream().close();
            outputOfMaven = IOUtil.read(inputStream);
            System.out.println(outputOfMaven);
        } finally {
            IOUtil.deleteDir(file);
        }
        assertTrue("build was not successfull", outputOfMaven.contains("BUILD SUCCESS"));
        outputOfMaven = outputOfMaven.replaceAll("bonitasoft.engine:bonita-server", "");
        outputOfMaven = outputOfMaven.replaceAll("bonitasoft.engine:bonita-client", "");
        outputOfMaven = outputOfMaven.replaceAll("bonitasoft.engine:bonita-common", "");
        if (outputOfMaven.contains("bonitasoft")) {
            String str = "bonitasoft";
            int indexOf = outputOfMaven.indexOf(str);
            String part1 = outputOfMaven.substring(indexOf - 50, indexOf - 1);
            String part2 = outputOfMaven.substring(indexOf - 1, indexOf + str.length());
            String part3 = outputOfMaven.substring(indexOf + str.length(), indexOf + str.length() + 50);
            fail("the dependency tree contains other modules than server/client/common: \"" + part1 + " =====>>>>>" + part2 + " <<<<<=====" + part3);
        }
    }
 | 
	    public void testShades() throws IOException {
        String mvn = System.getProperty("path.to.mvn", "mvn");
        String version = BPMLocalTest.getBonitaVersion();
        String thePom = getPom(version);
        File file = new File("shadeTester");
        file.mkdir();
        String outputOfMaven;
        try {
            File file2 = new File(file, "pom.xml");
            IOUtil.write(file2, thePom);
            System.out.println("building " + file2.getAbsolutePath());
            System.out.println("Run mvn in " + file.getAbsolutePath());
            Process exec = Runtime.getRuntime().exec(mvn + " dependency:tree", null, file);
            InputStream inputStream = exec.getInputStream();
            exec.getOutputStream().close();
            exec.getErrorStream().close();
            outputOfMaven = IOUtil.read(inputStream);
            System.out.println(outputOfMaven);
        } finally {
            IOUtil.deleteDir(file);
        }
        assertTrue("build was not successfull", outputOfMaven.contains("BUILD SUCCESS"));
        outputOfMaven = outputOfMaven.replaceAll("bonitasoft.engine:bonita-server", "");
        outputOfMaven = outputOfMaven.replaceAll("bonitasoft.engine:bonita-client", "");
        outputOfMaven = outputOfMaven.replaceAll("bonitasoft.engine:bonita-common", "");
        if (outputOfMaven.contains("bonitasoft")) {
            String str = "bonitasoft";
            int indexOf = outputOfMaven.indexOf(str);
            String part1 = outputOfMaven.substring(indexOf - 50, indexOf - 1);
            String part2 = outputOfMaven.substring(indexOf - 1, indexOf + str.length());
            String part3 = outputOfMaven.substring(indexOf + str.length(), indexOf + str.length() + 50);
            fail("the dependency tree contains other modules than server/client/common: \"" + part1 + " =====>>>>>" + part2 + " <<<<<=====" + part3);
        }
    }
 | 
| 
	    public boolean use(Hero hero, LivingEntity target, String[] args) {
        Player player = hero.getPlayer();
        if (target instanceof Player) {
            Player tPlayer = (Player) target;
            if (!(player.getItemInHand().getType() == Material.PAPER)) {
                Messaging.send(player, "You need paper to perform this.");
                return false;
            }
            if (playerSchedulers.containsKey(tPlayer.getEntityId())) {
                Messaging.send(player, "$1 is already being bandaged.", tPlayer.getName());
                return false;
            }
            if (tPlayer.getHealth() >= 20) {
                Messaging.send(player, "$1 is already at full health.", tPlayer.getName());
                return false;
            }
            tickHealth = config.getInt("tick-health", 1);
            ticks = config.getInt("ticks", 10);
            playerSchedulers.put(tPlayer.getEntityId(), plugin.getServer().getScheduler().scheduleAsyncRepeatingTask(plugin, new BandageTask(plugin, tPlayer), 20L, 20L));
            notifyNearbyPlayers(player.getLocation().toVector(), "$1 is bandaging $2.", player.getName(), tPlayer == player ? "himself" : tPlayer.getName());
            int firstSlot = player.getInventory().first(Material.PAPER);
            int num = player.getInventory().getItem(firstSlot).getAmount();
            if (num == 1) {
                player.getInventory().clear(firstSlot);
            } else if (num > 1) {
                player.getInventory().getItem(firstSlot).setAmount(num - 1);
            }
            return true;
        }
        return false;
    }
 | 
	    public boolean use(Hero hero, LivingEntity target, String[] args) {
        Player player = hero.getPlayer();
        if (target instanceof Player) {
            Player tPlayer = (Player) target;
            if (!(player.getItemInHand().getType() == Material.PAPER)) {
                Messaging.send(player, "You need paper to perform this.");
                return false;
            }
            if (playerSchedulers.containsKey(tPlayer.getEntityId())) {
                Messaging.send(player, "$1 is already being bandaged.", tPlayer.getName());
                return false;
            }
            if (tPlayer.getHealth() >= 20) {
                Messaging.send(player, "$1 is already at full health.", tPlayer.getName());
                return false;
            }
            tickHealth = config.getInt("tick-health", 1);
            ticks = config.getInt("ticks", 10);
            playerSchedulers.put(tPlayer.getEntityId(), plugin.getServer().getScheduler().scheduleSyncRepeatingTask(plugin, new BandageTask(plugin, tPlayer), 20L, 20L));
            notifyNearbyPlayers(player.getLocation().toVector(), "$1 is bandaging $2.", player.getName(), tPlayer == player ? "himself" : tPlayer.getName());
            int firstSlot = player.getInventory().first(Material.PAPER);
            int num = player.getInventory().getItem(firstSlot).getAmount();
            if (num == 1) {
                player.getInventory().clear(firstSlot);
            } else if (num > 1) {
                player.getInventory().getItem(firstSlot).setAmount(num - 1);
            }
            return true;
        }
        return false;
    }
 | 
| 
	    private RubyTime createTime(IRubyObject[] args, boolean gmt) {
        int len = 6;
        if (args.length == 10) {
            args = new IRubyObject[] { args[5], args[4], args[3], args[2], args[1], args[0] };
        } else {
            len = checkArgumentCount(args, 1, 7);
        }
        ThreadContext tc = getRuntime().getCurrentContext();
        if(!(args[0] instanceof RubyNumeric)) {
            args[0] = args[0].callMethod(tc,"to_i");
        }
        int year = (int)RubyNumeric.num2long(args[0]);
        int month = 0;
        if (len > 1) {
            if (!args[1].isNil()) {
                if (args[1] instanceof RubyString) {
                    month = -1;
                    for (int i = 0; i < 12; i++) {
                        if (months[i].equalsIgnoreCase(args[1].toString())) {
                            month = i;
                        }
                    }
                    if (month == -1) {
                        try {
                            month = Integer.parseInt(args[1].toString()) - 1;
                        } catch (NumberFormatException nfExcptn) {
                            throw getRuntime().newArgumentError("Argument out of range.");
                        }
                    }
                } else {
                    month = (int)RubyNumeric.num2long(args[1]) - 1;
                }
            }
            if (0 > month || month > 11) {
                throw getRuntime().newArgumentError("Argument out of range.");
            }
        }
        int[] int_args = { 1, 0, 0, 0, 0 };
        for (int i = 0; len > i + 2; i++) {
            if (!args[i + 2].isNil()) {
                if(!(args[i+2] instanceof RubyNumeric)) {
                    args[i+2] = args[i+2].callMethod(tc,"to_i");
                }
                int_args[i] = (int)RubyNumeric.num2long(args[i + 2]);
                if (time_min[i] > int_args[i] || int_args[i] > time_max[i]) {
                    throw getRuntime().newArgumentError("Argument out of range.");
                }
            }
        }
        Calendar cal = gmt ? Calendar.getInstance(TimeZone.getTimeZone(RubyTime.UTC)) : 
            Calendar.getInstance(); 
        RubyTime time = new RubyTime(getRuntime(), (RubyClass) this, cal);
        cal.set(year, month, int_args[0], int_args[1], int_args[2], int_args[3]);
        cal.set(Calendar.MILLISECOND, int_args[4] / 1000);
        time.setUSec(int_args[4] % 1000);
        time.callInit(args, Block.NULL_BLOCK);
        return time;
    }
 | 
	    private RubyTime createTime(IRubyObject[] args, boolean gmt) {
        int len = 6;
        if (args.length == 10) {
            args = new IRubyObject[] { args[5], args[4], args[3], args[2], args[1], args[0] };
        } else {
            len = checkArgumentCount(args, 1, 7);
        }
        ThreadContext tc = getRuntime().getCurrentContext();
        if(!(args[0] instanceof RubyNumeric)) {
            args[0] = args[0].callMethod(tc,"to_i");
        }
        int year = (int)RubyNumeric.num2long(args[0]);
        int month = 0;
        if (len > 1) {
            if (!args[1].isNil()) {
                if (args[1] instanceof RubyString) {
                    month = -1;
                    for (int i = 0; i < 12; i++) {
                        if (months[i].equalsIgnoreCase(args[1].toString())) {
                            month = i;
                        }
                    }
                    if (month == -1) {
                        try {
                            month = Integer.parseInt(args[1].toString()) - 1;
                        } catch (NumberFormatException nfExcptn) {
                            throw getRuntime().newArgumentError("Argument out of range.");
                        }
                    }
                } else {
                    month = (int)RubyNumeric.num2long(args[1]) - 1;
                }
            }
            if (0 > month || month > 11) {
                throw getRuntime().newArgumentError("Argument out of range.");
            }
        }
        int[] int_args = { 1, 0, 0, 0, 0 };
        for (int i = 0; len > i + 2; i++) {
            if (!args[i + 2].isNil()) {
                if(!(args[i+2] instanceof RubyNumeric)) {
                    args[i+2] = args[i+2].callMethod(tc,"to_i");
                }
                int_args[i] = (int)RubyNumeric.num2long(args[i + 2]);
                if (time_min[i] > int_args[i] || int_args[i] > time_max[i]) {
                    throw getRuntime().newArgumentError("Argument out of range.");
                }
            }
        }
        Calendar cal = gmt ? Calendar.getInstance(TimeZone.getTimeZone(RubyTime.UTC)) : 
            Calendar.getInstance(); 
        cal.set(year, month, int_args[0], int_args[1], int_args[2], int_args[3]);
        cal.set(Calendar.MILLISECOND, int_args[4] / 1000);
        if (cal.getTimeInMillis() < 0) {
            throw getRuntime().newArgumentError("time out of range");
        }
        RubyTime time = new RubyTime(getRuntime(), (RubyClass) this, cal);
        time.setUSec(int_args[4] % 1000);
        time.callInit(args, Block.NULL_BLOCK);
        return time;
    }
 | 
| 
		private void generateASCII()
	{
		System.out.println("Converting image into ASCII...");
		this.output = "";
		int width = this.output_image.getWidth();
		int height = this.output_image.getHeight();
		int last_percent = 0;
		for(int i = 0; i < height; ++i)
		{
			for(int j = 0; j < width; ++j)
			{
				String character = " ";
				int pixel = this.output_image.getRGB(j, i);
				int red = (pixel >> 16) & 0xff;
				int green = (pixel >> 8) & 0xff;
				int blue = (pixel) & 0xff;
				int grey = (int)(0.299 * red + 0.587 * green + 0.114 * blue);
				if(grey <= 100)
				{
					character = "+";
				}
				else if(grey > 100 && grey <= 150)
				{
					character = "@";
				}
				else if(grey > 150 && grey <= 240)
				{
					character = "*";
				}
				this.output += character;
			}
			this.output += "\n\r";
			int percent = (i / height) * 100;
			if(percent != last_percent)
			{
				last_percent = percent;
				System.out.println(String.format("Progress: %d%%", percent));
			}
		}
		System.out.println("Image converted into ASCII!");
	}
 | 
		private void generateASCII()
	{
		System.out.println("Converting image into ASCII...");
		this.output = "";
		int width = this.output_image.getWidth();
		int height = this.output_image.getHeight();
		int last_percent = 0;
		for(int i = 0; i < height; ++i)
		{
			for(int j = 0; j < width; ++j)
			{
				String character = " ";
				int pixel = this.output_image.getRGB(j, i);
				int red = (pixel >> 16) & 0xff;
				int green = (pixel >> 8) & 0xff;
				int blue = (pixel) & 0xff;
				int grey = (int)(0.299 * red + 0.587 * green + 0.114 * blue);
				if(grey <= 100)
				{
					character = "+";
				}
				else if(grey > 100 && grey <= 150)
				{
					character = "@";
				}
				else if(grey > 150 && grey <= 240)
				{
					character = "*";
				}
				this.output += character;
			}
			this.output += "\n";
			int percent = (i / height) * 100;
			if(percent != last_percent)
			{
				last_percent = percent;
				System.out.println(String.format("Progress: %d%%", percent));
			}
		}
		System.out.println("Image converted into ASCII!");
	}
 | 
| 
	    public void testProjectNameValue() throws Exception {
        final DistributedMasterBuilder masterBuilder = new DistributedMasterBuilder();
        final Builder nestedBuilder = new MockBuilder();
        masterBuilder.add(nestedBuilder);
        masterBuilder.setModule("deprecatedModule");
        try {
            masterBuilder.build(new HashMap());
            fail("Missing projectname property should have failed.");
        } catch (CruiseControlException e) {
            assertEquals(DistributedMasterBuilder.MSG_MISSING_PROJECT_NAME, e.getMessage());
        }
        final Map projectProperties = new HashMap();
        projectProperties.put(PropertiesHelper.PROJECT_NAME, "testProjectName");
        masterBuilder.setFailFast(); 
        try {
            masterBuilder.build(projectProperties);
            fail("Null agent should have failed.");
        } catch (CruiseControlException e) {
            assertEquals("Distributed build runtime exception", e.getMessage());
        }
    }
 | 
	    public void testProjectNameValue() throws Exception {
        final DistributedMasterBuilder masterBuilder = DistributedMasterBuilderTest.getMasterBuilder_LocalhostONLY();
        final Builder nestedBuilder = new MockBuilder();
        masterBuilder.add(nestedBuilder);
        masterBuilder.setModule("deprecatedModule");
        try {
            masterBuilder.build(new HashMap());
            fail("Missing projectname property should have failed.");
        } catch (CruiseControlException e) {
            assertEquals(DistributedMasterBuilder.MSG_MISSING_PROJECT_NAME, e.getMessage());
        }
        final Map projectProperties = new HashMap();
        projectProperties.put(PropertiesHelper.PROJECT_NAME, "testProjectName");
        masterBuilder.setFailFast(); 
        try {
            masterBuilder.build(projectProperties);
            fail("Null agent should have failed.");
        } catch (CruiseControlException e) {
            assertEquals("Distributed build runtime exception", e.getMessage());
        }
    }
 | 
| 
		public LinkedList<MIDPrimerCombo> loadMIDS() throws MIDFormatException
	{
		LinkedList <MIDPrimerCombo> MIDTags = new LinkedList <MIDPrimerCombo>();
		int midCount = 0;
		try
		{
			String line = input.readLine();
			while (line != null) 
			{
				if(line.trim().length() == 0)
				{
					continue;
				}
				String[] columns = line.split(",");
				if(columns.length != 3)
				{
					columns = line.split("\t");
					if(columns.length != 3)
						throw new MIDFormatException("Incorrect number of columns in " + inputLocation);
				}
				String descriptor = columns[0].trim();				
				String midTag = columns[1].trim();
				String primerSeq = columns[2].trim();
				for(int i = 0; i < midTag.length();i++)
				{
					char curr = midTag.charAt(i);
					if(! AcaciaEngine.getEngine().isIUPAC(curr))
					{
						throw new MIDFormatException("Invalid MID sequence: " + midTag);
					}
				}
				midTag = midTag.replace("\"", "");
				descriptor = descriptor.replace("\"", "");
				MIDTags.add(new MIDPrimerCombo(midTag.toUpperCase(), primerSeq.toUpperCase(), descriptor));
				line = input.readLine();
				midCount++;
			}
		} 
		catch (IOException ie) 
		{
			System.out.println("An input exception occurred from " + inputLocation);
		}
		return MIDTags;
	}
 | 
		public LinkedList<MIDPrimerCombo> loadMIDS() throws MIDFormatException
	{
		LinkedList <MIDPrimerCombo> MIDTags = new LinkedList <MIDPrimerCombo>();
		int midCount = 0;
		try
		{
			String line = input.readLine();
			while (line != null) 
			{
				if(line.trim().length() == 0)
				{
					line = input.readLine();
					continue;
				}
				String[] columns = line.split(",");
				if(columns.length != 3)
				{
					columns = line.split("\t");
					if(columns.length != 3)
						throw new MIDFormatException("Incorrect number of columns in " + inputLocation);
				}
				String descriptor = columns[0].trim();				
				String midTag = columns[1].trim();
				String primerSeq = columns[2].trim();
				for(int i = 0; i < midTag.length();i++)
				{
					char curr = midTag.charAt(i);
					if(! AcaciaEngine.getEngine().isIUPAC(curr))
					{
						throw new MIDFormatException("Invalid MID sequence: " + midTag);
					}
				}
				midTag = midTag.replace("\"", "");
				descriptor = descriptor.replace("\"", "");
				MIDTags.add(new MIDPrimerCombo(midTag.toUpperCase(), primerSeq.toUpperCase(), descriptor));
				line = input.readLine();
				midCount++;
			}
		} 
		catch (IOException ie) 
		{
			System.out.println("An input exception occurred from " + inputLocation);
		}
		return MIDTags;
	}
 | 
| 
		public Map pageListToMap(HttpServletRequest req, boolean loggedIn, Site site,
			SitePage page, String toolContextPath, String portalPrefix, boolean doPages,
			boolean resetTools, boolean includeSummary)
	{
		Map<String, Object> theMap = new HashMap<String, Object>();
		String pageUrl = Web.returnUrl(req, "/" + portalPrefix + "/"
				+ Web.escapeUrl(getSiteEffectiveId(site)) + "/page/");
		String toolUrl = Web.returnUrl(req, "/" + portalPrefix + "/"
				+ Web.escapeUrl(getSiteEffectiveId(site)));
		if (resetTools)
		{
			toolUrl = toolUrl + "/tool-reset/";
		}
		else
		{
			toolUrl = toolUrl + "/tool/";
		}
		String pagePopupUrl = Web.returnUrl(req, "/page/");
		boolean showHelp = ServerConfigurationService.getBoolean("display.help.menu",
				true);
		String iconUrl = site.getIconUrlFull();
		boolean published = site.isPublished();
		String type = site.getType();
		theMap.put("pageNavPublished", Boolean.valueOf(published));
		theMap.put("pageNavType", type);
		theMap.put("pageNavIconUrl", iconUrl);
		List pages = getPermittedPagesInOrder(site);
		List<Map> l = new ArrayList<Map>();
		for (Iterator i = pages.iterator(); i.hasNext();)
		{
			SitePage p = (SitePage) i.next();
			List pTools = p.getTools();
			ToolConfiguration firstTool = null;
			if (pTools != null && pTools.size() > 0)
			{
				firstTool = (ToolConfiguration) pTools.get(0);
			}
			String toolsOnPage = null;
			boolean current = (page != null && p.getId().equals(page.getId()) && !p
					.isPopUp());
			String alias = lookupPageToAlias(site.getId(), p);
			String pagerefUrl = pageUrl + Web.escapeUrl((alias != null)?alias:p.getId());
			if (doPages || p.isPopUp())
			{
				Map<String, Object> m = new HashMap<String, Object>();
				m.put("isPage", Boolean.valueOf(true));
				m.put("current", Boolean.valueOf(current));
				m.put("ispopup", Boolean.valueOf(p.isPopUp()));
				m.put("pagePopupUrl", pagePopupUrl);
				m.put("pageTitle", Web.escapeHtml(p.getTitle()));
				m.put("jsPageTitle", Web.escapeJavascript(p.getTitle()));
				m.put("pageId", Web.escapeUrl(p.getId()));
				m.put("jsPageId", Web.escapeJavascript(p.getId()));
				m.put("pageRefUrl", pagerefUrl);
				Iterator tools = pTools.iterator();
				StringBuffer desc = new StringBuffer();
				int tCount = 0;
				while(tools.hasNext()){
					ToolConfiguration t = (ToolConfiguration)tools.next();
					if (tCount > 0){
						desc.append(" | ");
					}
					desc.append(t.getTool().getDescription());
					tCount++;
				}
				String description = desc.toString().replace('"','-');
				m.put("description", desc.toString());
				if (toolsOnPage != null) m.put("toolsOnPage", toolsOnPage);
				if (includeSummary) summarizePage(m, site, p);
				if (firstTool != null)
				{
					String menuClass = firstTool.getToolId();
					menuClass = "icon-" + menuClass.replace('.', '-');
					m.put("menuClass", menuClass);
				}
				else
				{
					m.put("menuClass", "icon-default-tool");
				}
				m.put("pageProps", createPageProps(p));
				m.put("_sitePage", p);
				l.add(m);
				continue;
			}
			Iterator iPt = pTools.iterator();
			while (iPt.hasNext())
			{
				ToolConfiguration placement = (ToolConfiguration) iPt.next();
				String toolrefUrl = toolUrl + Web.escapeUrl(placement.getId());
				Map<String, Object> m = new HashMap<String, Object>();
				m.put("isPage", Boolean.valueOf(false));
				m.put("toolId", Web.escapeUrl(placement.getId()));
				m.put("jsToolId", Web.escapeJavascript(placement.getId()));
				m.put("toolRegistryId", placement.getToolId());
				m.put("toolTitle", Web.escapeHtml(placement.getTitle()));
				m.put("jsToolTitle", Web.escapeJavascript(placement.getTitle()));
				m.put("toolrefUrl", toolrefUrl);
				String menuClass = placement.getToolId();
				menuClass = "icon-" + menuClass.replace('.', '-');
				m.put("menuClass", menuClass);
				m.put("_placement", placement);
				l.add(m);
			}
		}
		PageFilter pageFilter = portal.getPageFilter();
		if (pageFilter != null)
		{
			l = pageFilter.filterPlacements(l, site);
		}
		theMap.put("pageNavTools", l);
		theMap.put("pageMaxIfSingle", ServerConfigurationService.getBoolean(
				"portal.experimental.maximizesinglepage", false));
		theMap.put("pageNavToolsCount", Integer.valueOf(l.size()));
		String helpUrl = ServerConfigurationService.getHelpUrl(null);
		theMap.put("pageNavShowHelp", Boolean.valueOf(showHelp));
		theMap.put("pageNavHelpUrl", helpUrl);
		theMap.put("helpMenuClass", "icon-sakai-help");
		theMap.put("subsiteClass", "icon-sakai-subsite");
		boolean showPresence;
		String globalShowPresence = ServerConfigurationService.getString("display.users.present");
		if ("never".equals(globalShowPresence)) {
			showPresence = false;
		} else if ("always".equals(globalShowPresence)) {
			showPresence = true;
		} else {
			String showPresenceSite = site.getProperties().getProperty("display-users-present");
			if (showPresenceSite == null)
			{
				showPresence = Boolean.valueOf(globalShowPresence).booleanValue();  
			}
			else 
			{
				showPresence = Boolean.valueOf(showPresenceSite).booleanValue();
			}	
		}
		String presenceUrl = Web.returnUrl(req, "/presence/"
				+ Web.escapeUrl(site.getId()));
		theMap.put("pageNavShowPresenceLoggedIn", Boolean.valueOf(showPresence
				&& loggedIn));
		theMap.put("pageNavPresenceUrl", presenceUrl);
		return theMap;
	}
 | 
		public Map pageListToMap(HttpServletRequest req, boolean loggedIn, Site site,
			SitePage page, String toolContextPath, String portalPrefix, boolean doPages,
			boolean resetTools, boolean includeSummary)
	{
		Map<String, Object> theMap = new HashMap<String, Object>();
		String pageUrl = Web.returnUrl(req, "/" + portalPrefix + "/"
				+ Web.escapeUrl(getSiteEffectiveId(site)) + "/page/");
		String toolUrl = Web.returnUrl(req, "/" + portalPrefix + "/"
				+ Web.escapeUrl(getSiteEffectiveId(site)));
		if (resetTools)
		{
			toolUrl = toolUrl + "/tool-reset/";
		}
		else
		{
			toolUrl = toolUrl + "/tool/";
		}
		String pagePopupUrl = Web.returnUrl(req, "/page/");
		boolean showHelp = ServerConfigurationService.getBoolean("display.help.menu",
				true);
		String iconUrl = site.getIconUrlFull();
		boolean published = site.isPublished();
		String type = site.getType();
		theMap.put("pageNavPublished", Boolean.valueOf(published));
		theMap.put("pageNavType", type);
		theMap.put("pageNavIconUrl", iconUrl);
		List pages = getPermittedPagesInOrder(site);
		List<Map> l = new ArrayList<Map>();
		for (Iterator i = pages.iterator(); i.hasNext();)
		{
			SitePage p = (SitePage) i.next();
			List pTools = p.getTools();
			ToolConfiguration firstTool = null;
			if (pTools != null && pTools.size() > 0)
			{
				firstTool = (ToolConfiguration) pTools.get(0);
			}
			String toolsOnPage = null;
			boolean current = (page != null && p.getId().equals(page.getId()) && !p
					.isPopUp());
			String alias = lookupPageToAlias(site.getId(), p);
			String pagerefUrl = pageUrl + Web.escapeUrl((alias != null)?alias:p.getId());
			if (doPages || p.isPopUp())
			{
				Map<String, Object> m = new HashMap<String, Object>();
				m.put("isPage", Boolean.valueOf(true));
				m.put("current", Boolean.valueOf(current));
				m.put("ispopup", Boolean.valueOf(p.isPopUp()));
				m.put("pagePopupUrl", pagePopupUrl);
				m.put("pageTitle", Web.escapeHtml(p.getTitle()));
				m.put("jsPageTitle", Web.escapeJavascript(p.getTitle()));
				m.put("pageId", Web.escapeUrl(p.getId()));
				m.put("jsPageId", Web.escapeJavascript(p.getId()));
				m.put("pageRefUrl", pagerefUrl);
				Iterator tools = pTools.iterator();
				StringBuffer desc = new StringBuffer();
				int tCount = 0;
				while(tools.hasNext()){
					ToolConfiguration t = (ToolConfiguration)tools.next();
					if (tCount > 0){
						desc.append(" | ");
					}
					if ( t.getTool() == null ) continue;
					desc.append(t.getTool().getDescription());
					tCount++;
				}
				String description = desc.toString().replace('"','-');
				m.put("description", desc.toString());
				if (toolsOnPage != null) m.put("toolsOnPage", toolsOnPage);
				if (includeSummary) summarizePage(m, site, p);
				if (firstTool != null)
				{
					String menuClass = firstTool.getToolId();
					menuClass = "icon-" + menuClass.replace('.', '-');
					m.put("menuClass", menuClass);
				}
				else
				{
					m.put("menuClass", "icon-default-tool");
				}
				m.put("pageProps", createPageProps(p));
				m.put("_sitePage", p);
				l.add(m);
				continue;
			}
			Iterator iPt = pTools.iterator();
			while (iPt.hasNext())
			{
				ToolConfiguration placement = (ToolConfiguration) iPt.next();
				String toolrefUrl = toolUrl + Web.escapeUrl(placement.getId());
				Map<String, Object> m = new HashMap<String, Object>();
				m.put("isPage", Boolean.valueOf(false));
				m.put("toolId", Web.escapeUrl(placement.getId()));
				m.put("jsToolId", Web.escapeJavascript(placement.getId()));
				m.put("toolRegistryId", placement.getToolId());
				m.put("toolTitle", Web.escapeHtml(placement.getTitle()));
				m.put("jsToolTitle", Web.escapeJavascript(placement.getTitle()));
				m.put("toolrefUrl", toolrefUrl);
				String menuClass = placement.getToolId();
				menuClass = "icon-" + menuClass.replace('.', '-');
				m.put("menuClass", menuClass);
				m.put("_placement", placement);
				l.add(m);
			}
		}
		PageFilter pageFilter = portal.getPageFilter();
		if (pageFilter != null)
		{
			l = pageFilter.filterPlacements(l, site);
		}
		theMap.put("pageNavTools", l);
		theMap.put("pageMaxIfSingle", ServerConfigurationService.getBoolean(
				"portal.experimental.maximizesinglepage", false));
		theMap.put("pageNavToolsCount", Integer.valueOf(l.size()));
		String helpUrl = ServerConfigurationService.getHelpUrl(null);
		theMap.put("pageNavShowHelp", Boolean.valueOf(showHelp));
		theMap.put("pageNavHelpUrl", helpUrl);
		theMap.put("helpMenuClass", "icon-sakai-help");
		theMap.put("subsiteClass", "icon-sakai-subsite");
		boolean showPresence;
		String globalShowPresence = ServerConfigurationService.getString("display.users.present");
		if ("never".equals(globalShowPresence)) {
			showPresence = false;
		} else if ("always".equals(globalShowPresence)) {
			showPresence = true;
		} else {
			String showPresenceSite = site.getProperties().getProperty("display-users-present");
			if (showPresenceSite == null)
			{
				showPresence = Boolean.valueOf(globalShowPresence).booleanValue();  
			}
			else 
			{
				showPresence = Boolean.valueOf(showPresenceSite).booleanValue();
			}	
		}
		String presenceUrl = Web.returnUrl(req, "/presence/"
				+ Web.escapeUrl(site.getId()));
		theMap.put("pageNavShowPresenceLoggedIn", Boolean.valueOf(showPresence
				&& loggedIn));
		theMap.put("pageNavPresenceUrl", presenceUrl);
		return theMap;
	}
 | 
| 
		protected void onRowPopulated(final WebMarkupContainer rowComponent) {
		if (disableRowClickNotifications())
			return;
		rowComponent.add(new AjaxFormSubmitBehavior(getForm(), "onclick") {
			private static final long serialVersionUID = 1L;
			@Override
			protected void onSubmit(AjaxRequestTarget target) {
			}
			@Override
			protected void onError(AjaxRequestTarget target) {
			}
			@Override
			protected void onEvent(AjaxRequestTarget target) {
				Form form = getForm();
				form.visitFormComponentsPostOrder(new FormComponent.AbstractVisitor() {
					public void onFormComponent(final FormComponent formComponent) {
						if (formComponent.isVisibleInHierarchy()) {
							formComponent.inputChanged();
						}
					}
				});
				String column = getRequest().getParameter("column");
				lastClickedColumn = column;
				IModel model = rowComponent.getModel();
				IGridColumn lastClickedColumn = getLastClickedColumn();
				if (lastClickedColumn != null && lastClickedColumn.cellClicked(model) == true) {
					return;
				}
				onRowClicked(target, model);
			}
			@Override
			public CharSequence getCallbackUrl() {
				return super.getCallbackUrl() + "&column='+col+'";
			}
			@Override
			protected IAjaxCallDecorator getAjaxCallDecorator() {
				return new AjaxCallDecorator() {
					private static final long serialVersionUID = 1L;
					@Override
					public CharSequence decorateScript(CharSequence script) {
						return super.decorateScript("if (InMethod.XTable.canSelectRow(event)) { "
								+ "var col=(this.imxtClickedColumn || ''); this.imxtClickedColumn='';" + script
								+ " } else return false;");
					}
				};
			}
		});
	}
 | 
		protected void onRowPopulated(final WebMarkupContainer rowComponent) {
		if (disableRowClickNotifications())
			return;
		rowComponent.add(new AjaxFormSubmitBehavior(getForm(), "onclick") {
			private static final long serialVersionUID = 1L;
			@Override
			protected void onSubmit(AjaxRequestTarget target) {
			}
			@Override
			protected void onError(AjaxRequestTarget target) {
			}
			@Override
			protected void onEvent(AjaxRequestTarget target) {
				Form form = getForm();
				form.visitFormComponentsPostOrder(new FormComponent.AbstractVisitor() {
					public void onFormComponent(final FormComponent formComponent) {
						if (formComponent.isVisibleInHierarchy()) {
							formComponent.inputChanged();
						}
					}
				});
				String column = getRequest().getParameter("column");
				lastClickedColumn = column;
				IModel model = rowComponent.getModel();
				IGridColumn lastClickedColumn = getLastClickedColumn();
				if (lastClickedColumn != null && lastClickedColumn.cellClicked(model) == true) {
					return;
				}
				onRowClicked(target, model);
			}
			@Override
			public CharSequence getCallbackUrl() {
				return super.getCallbackUrl() + "&column='+col+'";
			}
			@Override
			protected IAjaxCallDecorator getAjaxCallDecorator() {
				return new AjaxCallDecorator() {
					private static final long serialVersionUID = 1L;
					@Override
					public CharSequence decorateScript(CharSequence script) {
						return super.decorateScript("if (InMethod.XTable.canSelectRow(event)) { "
								+ "var col=(this.imxtClickedColumn || ''); this.imxtClickedColumn='';" + script
								+ " }");
					}
				};
			}
		});
	}
 | 
| 
	  private void editResource
          (AppleResponse
                  res, AppleRequest
                  req, String
                  type, String
                  messages) {
    boolean validated = true;
    boolean insertSuccess = false;
    boolean updateDate = false;
    String dctPublisher;
    String dctIdentifier;
    String dateAccepted;
    String committer;
    String allTopics = adminService.getAllTopics();
    String allLanguages = adminService.getAllLanguages();
    String allMediatypes = adminService.getAllMediaTypes();
    String allAudiences = adminService.getAllAudiences();
    String allStatuses = adminService.getAllStatuses();
    StringBuffer messageBuffer = new StringBuffer();
    messageBuffer.append("<c:messages xmlns:c=\"http://xmlns.computas.com/cocoon\" xmlns:i18n=\"http://apache.org/cocoon/i18n/2.1\">\n");
    messageBuffer.append(messages);
    Map<String, Object> bizData = new HashMap<String, Object>();
    bizData.put("topics", allTopics);
    bizData.put("languages", allLanguages);
    bizData.put("mediatypes", allMediatypes);
    bizData.put("audience", allAudiences);
    bizData.put("status", allStatuses);
    bizData.put("userprivileges", userPrivileges);
    if (req.getCocoonRequest().getMethod().equalsIgnoreCase("GET")) {
      bizData.put("tempvalues", "<empty></empty>");
      if ("ny".equalsIgnoreCase(type)) {
        registerNewResourceURL(req, res);
        return;
      } else {
        bizData.put("resource", adminService.getResourceByURI(req.getCocoonRequest().getParameter("uri")));
        bizData.put("publishers", adminService.getAllPublishers());
        bizData.put("mode", "edit");
        bizData.put("messages", "<empty></empty>");
        res.sendPage("xml2/ressurs", bizData);
      }
    } else if (req.getCocoonRequest().getMethod().equalsIgnoreCase("POST")) {
      if ("Slett ressurs".equalsIgnoreCase(req.getCocoonRequest().getParameter("actionbutton")) || "Delete resource".equalsIgnoreCase(req.getCocoonRequest().getParameter("actionbutton"))) {
        String deleteString = "DELETE {\n" +
                "<" + req.getCocoonRequest().getParameter("uri") + "> ?a ?o.\n" +
                "} WHERE {\n" +
                "<" + req.getCocoonRequest().getParameter("uri") + "> ?a ?o. }";
        boolean deleteResourceSuccess = sparulDispatcher.query(deleteString);
        logger.trace("ResourceController.editResource --> DELETE RESOURCE QUERY:\n" + deleteString);
        logger.trace("ResourceController.editResource --> DELETE RESOURCE QUERY RESULT: " + deleteResourceSuccess);
        if (deleteResourceSuccess) {
          messageBuffer.append("<c:message>Ressursen slettet!</c:message>\n");
          bizData.put("resource", "<empty></empty>");
          bizData.put("tempvalues", "<empty></empty>");
          bizData.put("mode", "edit");
        } else {
          messageBuffer.append("<c:message>Feil ved sletting av ressurs</c:message>\n");
          bizData.put("tempvalues", "<empty></empty>");
          bizData.put("resource", adminService.getResourceByURI(req.getCocoonRequest().getParameter("sub:url")));
          bizData.put("mode", "edit");
        }
      } else {
        Map<String, String[]> parameterMap = new TreeMap<String, String[]>(createParametersMap(req.getCocoonRequest()));
        String tempPrefixes = "<c:tempvalues \n" +
                "xmlns:topic=\"" + getProperty("sublima.base.url") + "topic/\"\n" +
                "xmlns:skos=\"http://www.w3.org/2004/02/skos/core#\"\n" +
                "xmlns:wdr=\"http://www.w3.org/2007/05/powder#\"\n" +
                "xmlns:lingvoj=\"http://www.lingvoj.org/ontology#\"\n" +
                "xmlns:sioc=\"http://rdfs.org/sioc/ns#\"\n" +
                "xmlns:rdf=\"http://www.w3.org/1999/02/22-rdf-syntax-ns#\"\n" +
                "xmlns:foaf=\"http://xmlns.com/foaf/0.1/\"\n" +
                "xmlns:owl=\"http://www.w3.org/2002/07/owl#\"\n" +
                "xmlns:dct=\"http://purl.org/dc/terms/\"\n" +
                "xmlns:xsd=\"http://www.w3.org/2001/XMLSchema#\"\n" +
                "xmlns:dcmitype=\"http://purl.org/dc/dcmitype/\"\n" +
                "xmlns:rdfs=\"http://www.w3.org/2000/01/rdf-schema#\"\n" +
                "xmlns:c=\"http://xmlns.computas.com/cocoon\"\n" +
                "xmlns:i18n=\"http://apache.org/cocoon/i18n/2.1\"\n" +
                "xmlns:sub=\"http://xmlns.computas.com/sublima#\">\n";
        Date date = new Date();
        DateFormat dateFormat = new SimpleDateFormat("yyyy-MM-dd HH:mm:ss");
        dateAccepted = dateFormat.format(date); 
        if (parameterMap.containsKey("markasnew")) {
          updateDate = true;
          parameterMap.remove("markasnew");
        }
        parameterMap.put("sub:committer", new String[]{user.getId()});
          if ("".equalsIgnoreCase(req.getCocoonRequest().getParameter("dct:identifier")) || req.getCocoonRequest().getParameter("dct:identifier") == null) {
            updateDate = true;
            dctIdentifier = req.getCocoonRequest().getParameter("dct:title-1").replace(" ", "_");
            dctIdentifier = dctIdentifier.replace(",", "_");
            dctIdentifier = dctIdentifier.replace(".", "_");
            dctIdentifier = getProperty("sublima.base.url") + "resource/" + dctIdentifier + parameterMap.get("the-resource").hashCode();
          } else {
            dctIdentifier = req.getCocoonRequest().getParameter("dct:identifier");
          }
        if (updateDate) {
          parameterMap.put("dct:dateAccepted", new String[]{dateAccepted});
        }
        Form2SparqlService form2SparqlService = new Form2SparqlService(parameterMap.get("prefix"));
        parameterMap.put("sub:url", parameterMap.get("the-resource"));
        parameterMap.remove("dct:identifier");
        parameterMap.put("dct:identifier", new String[] {dctIdentifier});
        parameterMap.remove("prefix"); 
        parameterMap.remove("actionbutton"); 
        if (parameterMap.get("subjecturi-prefix") != null) {
          parameterMap.put("subjecturi-prefix", new String[]{getProperty("sublima.base.url") +
                  parameterMap.get("subjecturi-prefix")[0]});
        }
        String sparqlQuery = null;
        try {
          sparqlQuery = form2SparqlService.convertForm2Sparul(parameterMap);
        }
        catch (IOException e) {
          messageBuffer.append("<c:message>Feil ved lagring av emne</c:message>\n");
        }
        insertSuccess = sparulDispatcher.query(sparqlQuery);
        logger.trace("AdminController.editResource --> INSERT QUERY RESULT: " + insertSuccess);
        if (insertSuccess) {
          messageBuffer.append("<c:message>Ny ressurs lagt til!</c:message>\n");
        } else {
          messageBuffer.append("<c:message>Feil ved lagring av ny ressurs</c:message>\n");
          bizData.put("resource", "<empty></empty>");
        }
      }
      if (insertSuccess) {
        bizData.put("resource", adminService.getResourceByURI(req.getCocoonRequest().getParameter("the-resource")));
        bizData.put("tempvalues", "<empty></empty>");
        bizData.put("mode", "edit");
      } else {
        bizData.put("resource", "<empty></empty>");
        bizData.put("tempvalues", "<empty/>");
        bizData.put("mode", "temp");
      }
      messageBuffer.append("</c:messages>\n");
      bizData.put("messages", messageBuffer.toString());
      bizData.put("userprivileges", userPrivileges);
      bizData.put("publishers", adminService.getAllPublishers());
      res.sendPage("xml2/ressurs", bizData);
    }
 | 
	  private void editResource
          (AppleResponse
                  res, AppleRequest
                  req, String
                  type, String
                  messages) {
    boolean validated = true;
    boolean insertSuccess = false;
    boolean updateDate = false;
    String dctPublisher;
    String dctIdentifier;
    String dateAccepted;
    String committer;
    String allTopics = adminService.getAllTopics();
    String allLanguages = adminService.getAllLanguages();
    String allMediatypes = adminService.getAllMediaTypes();
    String allAudiences = adminService.getAllAudiences();
    String allStatuses = adminService.getAllStatuses();
    StringBuffer messageBuffer = new StringBuffer();
    messageBuffer.append("<c:messages xmlns:c=\"http://xmlns.computas.com/cocoon\" xmlns:i18n=\"http://apache.org/cocoon/i18n/2.1\">\n");
    messageBuffer.append(messages);
    Map<String, Object> bizData = new HashMap<String, Object>();
    bizData.put("topics", allTopics);
    bizData.put("languages", allLanguages);
    bizData.put("mediatypes", allMediatypes);
    bizData.put("audience", allAudiences);
    bizData.put("status", allStatuses);
    bizData.put("userprivileges", userPrivileges);
    if (req.getCocoonRequest().getMethod().equalsIgnoreCase("GET")) {
      bizData.put("tempvalues", "<empty></empty>");
      if ("ny".equalsIgnoreCase(type)) {
        registerNewResourceURL(req, res);
        return;
      } else {
        bizData.put("resource", adminService.getResourceByURI(req.getCocoonRequest().getParameter("uri")));
        bizData.put("publishers", adminService.getAllPublishers());
        bizData.put("mode", "edit");
        bizData.put("messages", "<empty></empty>");
        res.sendPage("xml2/ressurs", bizData);
      }
    } else if (req.getCocoonRequest().getMethod().equalsIgnoreCase("POST")) {
      if ("Slett ressurs".equalsIgnoreCase(req.getCocoonRequest().getParameter("actionbutton")) || "Delete resource".equalsIgnoreCase(req.getCocoonRequest().getParameter("actionbutton"))) {
        String deleteString = "DELETE {\n" +
                "<" + req.getCocoonRequest().getParameter("uri") + "> ?a ?o.\n" +
                "} WHERE {\n" +
                "<" + req.getCocoonRequest().getParameter("uri") + "> ?a ?o. }";
        boolean deleteResourceSuccess = sparulDispatcher.query(deleteString);
        logger.trace("ResourceController.editResource --> DELETE RESOURCE QUERY:\n" + deleteString);
        logger.trace("ResourceController.editResource --> DELETE RESOURCE QUERY RESULT: " + deleteResourceSuccess);
        if (deleteResourceSuccess) {
          messageBuffer.append("<c:message>Ressursen slettet!</c:message>\n");
          bizData.put("resource", "<empty></empty>");
          bizData.put("tempvalues", "<empty></empty>");
          bizData.put("mode", "edit");
        } else {
          messageBuffer.append("<c:message>Feil ved sletting av ressurs</c:message>\n");
          bizData.put("tempvalues", "<empty></empty>");
          bizData.put("resource", adminService.getResourceByURI(req.getCocoonRequest().getParameter("sub:url")));
          bizData.put("mode", "edit");
        }
      } else {
        Map<String, String[]> parameterMap = new TreeMap<String, String[]>(createParametersMap(req.getCocoonRequest()));
        String tempPrefixes = "<c:tempvalues \n" +
                "xmlns:topic=\"" + getProperty("sublima.base.url") + "topic/\"\n" +
                "xmlns:skos=\"http://www.w3.org/2004/02/skos/core#\"\n" +
                "xmlns:wdr=\"http://www.w3.org/2007/05/powder#\"\n" +
                "xmlns:lingvoj=\"http://www.lingvoj.org/ontology#\"\n" +
                "xmlns:sioc=\"http://rdfs.org/sioc/ns#\"\n" +
                "xmlns:rdf=\"http://www.w3.org/1999/02/22-rdf-syntax-ns#\"\n" +
                "xmlns:foaf=\"http://xmlns.com/foaf/0.1/\"\n" +
                "xmlns:owl=\"http://www.w3.org/2002/07/owl#\"\n" +
                "xmlns:dct=\"http://purl.org/dc/terms/\"\n" +
                "xmlns:xsd=\"http://www.w3.org/2001/XMLSchema#\"\n" +
                "xmlns:dcmitype=\"http://purl.org/dc/dcmitype/\"\n" +
                "xmlns:rdfs=\"http://www.w3.org/2000/01/rdf-schema#\"\n" +
                "xmlns:c=\"http://xmlns.computas.com/cocoon\"\n" +
                "xmlns:i18n=\"http://apache.org/cocoon/i18n/2.1\"\n" +
                "xmlns:sub=\"http://xmlns.computas.com/sublima#\">\n";
        Date date = new Date();
        DateFormat dateFormat = new SimpleDateFormat("yyyy-MM-dd HH:mm:ss");
        dateAccepted = dateFormat.format(date); 
        if (parameterMap.containsKey("markasnew")) {
          updateDate = true;
          parameterMap.remove("markasnew");
        }
        parameterMap.put("sub:committer", new String[]{user.getId()});
          if ("".equalsIgnoreCase(req.getCocoonRequest().getParameter("dct:identifier")) || req.getCocoonRequest().getParameter("dct:identifier") == null) {
            updateDate = true;
            dctIdentifier = req.getCocoonRequest().getParameter("dct:title-1").replace(" ", "_");
            dctIdentifier = dctIdentifier.replace(",", "_");
            dctIdentifier = dctIdentifier.replace(".", "_");
            dctIdentifier = getProperty("sublima.base.url") + "resource/" + dctIdentifier + parameterMap.get("the-resource").hashCode();
          } else {
            dctIdentifier = req.getCocoonRequest().getParameter("dct:identifier");
          }
        if (updateDate) {
          parameterMap.put("dct:dateAccepted", new String[]{dateAccepted});
        }
        Form2SparqlService form2SparqlService = new Form2SparqlService(parameterMap.get("prefix"));
        parameterMap.put("sub:url", parameterMap.get("the-resource"));
        parameterMap.remove("dct:identifier");
        parameterMap.put("dct:identifier", new String[] {dctIdentifier});
        parameterMap.remove("prefix"); 
        parameterMap.remove("actionbutton"); 
        if (parameterMap.get("subjecturi-prefix") != null) {
          parameterMap.put("subjecturi-prefix", new String[]{getProperty("sublima.base.url") +
                  parameterMap.get("subjecturi-prefix")[0]});
        }
        String sparqlQuery = null;
        try {
          sparqlQuery = form2SparqlService.convertForm2Sparul(parameterMap);
        }
        catch (IOException e) {
          messageBuffer.append("<c:message>Feil ved lagring av emne</c:message>\n");
        }
        insertSuccess = sparulDispatcher.query(sparqlQuery);
        logger.trace("AdminController.editResource --> INSERT QUERY RESULT: " + insertSuccess);
        if (insertSuccess) {
          messageBuffer.append("<c:message>Ny ressurs lagt til!</c:message>\n");
        } else {
          messageBuffer.append("<c:message>Feil ved lagring av ny ressurs</c:message>\n");
        }
      }
      if (insertSuccess) {
        bizData.put("resource", adminService.getResourceByURI(req.getCocoonRequest().getParameter("the-resource")));
        bizData.put("tempvalues", "<empty></empty>");
        bizData.put("mode", "edit");
      } else {
        bizData.put("resource", "<empty></empty>");
        bizData.put("tempvalues", "<empty/>");
        bizData.put("mode", "edit");
      }
      messageBuffer.append("</c:messages>\n");
      bizData.put("messages", messageBuffer.toString());
      bizData.put("userprivileges", userPrivileges);
      bizData.put("publishers", adminService.getAllPublishers());
      res.sendPage("xml2/ressurs", bizData);
    }
 | 
| 
		public void run() {
		try {
			socket = new DatagramSocket(port);
		} catch (Exception e) {
			System.out.println("Unable to start UDP server on port " + port + ". Ignoring ...");
			return ;
		}
		System.out.println("UDP server started on port " + port);
		while (true) {
	        try {
	        	if (isInterrupted()) break;
	            byte[] buf = new byte[256];
	            DatagramPacket packet = new DatagramPacket(buf, buf.length);
	            socket.receive(packet);
	            msgList.add(packet);
	        } catch (IOException e) {
	            if (e.getMessage().equals("socket closed")) {
	            } else {
		        	System.out.println("ERROR in UDP server. Stack trace:");
		            e.printStackTrace();
	            }
	        }
		}
		socket.close();
    	System.out.println("UDP NAT server closed.");
	}
 | 
		public void run() {
		try {
			socket = new DatagramSocket(port);
		} catch (Exception e) {
			System.out.println("Unable to start UDP server on port " + port + ". Ignoring ...");
			return ;
		}
		System.out.println("UDP server started on port " + port);
		while (true) {
	        try {
	        	if (isInterrupted()) break;
	            byte[] buf = new byte[256];
	            DatagramPacket packet = new DatagramPacket(buf, buf.length);
	            socket.receive(packet);
	            msgList.add(packet);
	        } catch (IOException e) {
	            if (e.getMessage().equalsIgnoreCase("socket closed")) {
	            } else {
		        	System.out.println("ERROR in UDP server. Stack trace:");
		            e.printStackTrace();
	            }
	        }
		}
		socket.close();
    	System.out.println("UDP NAT server closed.");
	}
 | 
| 
		ChartsPanel(RemoteCollector remoteCollector) {
		super(remoteCollector);
		final JLabel throbberLabel = new JLabel(THROBBER_ICON);
		add(throbberLabel, BorderLayout.NORTH);
		add(createButtonsPanel(), BorderLayout.CENTER);
		final SwingWorker<Map<String, byte[]>, Object> swingWorker = new SwingWorker<Map<String, byte[]>, Object>() {
			@Override
			protected Map<String, byte[]> doInBackground() throws IOException {
				return getRemoteCollector().collectJRobins(CHART_WIDTH, CHART_HEIGHT);
			}
			@Override
			protected void done() {
				try {
					final Map<String, byte[]> jrobins = get();
					final JPanel mainJRobinsPanel = createJRobinPanel(jrobins);
					remove(throbberLabel);
					add(mainJRobinsPanel, BorderLayout.NORTH);
					revalidate();
				} catch (final Exception e) {
					MSwingUtilities.showException(e);
				}
			}
		};
		swingWorker.execute();
	}
 | 
		ChartsPanel(RemoteCollector remoteCollector) {
		super(remoteCollector);
		final JLabel throbberLabel = new JLabel(THROBBER_ICON);
		add(throbberLabel, BorderLayout.NORTH);
		add(createButtonsPanel(), BorderLayout.CENTER);
		final SwingWorker<Map<String, byte[]>, Object> swingWorker = new SwingWorker<Map<String, byte[]>, Object>() {
			@Override
			protected Map<String, byte[]> doInBackground() throws IOException {
				return getRemoteCollector().collectJRobins(CHART_WIDTH, CHART_HEIGHT);
			}
			@Override
			protected void done() {
				try {
					final Map<String, byte[]> jrobins = get();
					final JPanel mainJRobinsPanel = createJRobinPanel(jrobins);
					remove(throbberLabel);
					add(mainJRobinsPanel, BorderLayout.NORTH);
					revalidate();
				} catch (final Exception e) {
					MSwingUtilities.showException(e);
					remove(throbberLabel);
				}
			}
		};
		swingWorker.execute();
	}
 | 
| 
	    public void onCreate(Bundle savedInstanceState) {
        super.onCreate(savedInstanceState);
        requestWindowFeature(Window.FEATURE_NO_TITLE);
        getWindow().setFlags(WindowManager.LayoutParams.FLAG_FULLSCREEN, WindowManager.LayoutParams.FLAG_FULLSCREEN);
        setContentView(R.layout.main);
        service = new TrollServiceSqlLite(getBaseContext());
        String levelId = getIntent().getExtras().getString(HomeScreenActiity.LEVEL_ID);
        level = service.getLevel(levelId);
        loadComponents();
        initGraphics();
        moveToCity(service.getCity(level.getStartCityId()));
        City goal = service.getCity(level.getGoalCityId());
        goalView.setText("Goal: "  + goal.getName());
        mapView.setGoalCity(goal);
        counter = new CountDown(10000,1000, timeLeftView);
        counter.start();
        counter.setOnFinishListener(new CountDown.OnCounterFinishListener() {	
			public void finished() {
				failDialog.show();
			}
		});
        successDialog =  new SuccessDialog(this);
        Typeface tf = Typeface.createFromAsset(getAssets(), "fonts/fixed.ttf");
        button1.setTypeface(tf);
        button2.setTypeface(tf);
        button3.setTypeface(tf);
        button4.setTypeface(tf);
        goalView.setTypeface(tf);
    	timeLeftView.setTypeface(tf);
    }
 | 
	    public void onCreate(Bundle savedInstanceState) {
        super.onCreate(savedInstanceState);
        requestWindowFeature(Window.FEATURE_NO_TITLE);
        getWindow().setFlags(WindowManager.LayoutParams.FLAG_FULLSCREEN, WindowManager.LayoutParams.FLAG_FULLSCREEN);
        setContentView(R.layout.main);
        service = new TrollServiceSqlLite(getBaseContext());
        String levelId = getIntent().getExtras().getString(HomeScreenActiity.LEVEL_ID);
        level = service.getLevel(levelId);
        loadComponents();
        initGraphics();
        moveToCity(service.getCity(level.getStartCityId()));
        City goal = service.getCity(level.getGoalCityId());
        goalView.setText("Goal: "  + goal.getName());
        mapView.setGoalCity(goal);
        counter = new CountDown(10000,1000, timeLeftView);
        counter.start();
        counter.setOnFinishListener(new CountDown.OnCounterFinishListener() {	
			public void finished() {
				failDialog.show();
			}
		});
        successDialog =  new SuccessDialog(this, levelId);
        Typeface tf = Typeface.createFromAsset(getAssets(), "fonts/fixed.ttf");
        button1.setTypeface(tf);
        button2.setTypeface(tf);
        button3.setTypeface(tf);
        button4.setTypeface(tf);
        goalView.setTypeface(tf);
    	timeLeftView.setTypeface(tf);
    }
 | 
| 
		private final TextElement parseText(String currentText, String tag, String arg) {
		TextElement result = new TextElement(tag);
		if(result.mType == TextElementType.Quote)
			result.mContent = arg;
		if (currentText.substring(0,1).equals("\n")) {
			result.mConsumedLength++;
		}
		Pattern tagPattern = Pattern.compile("\\[(.+?)(?:=\"?(.+?)\"?)?\\]", Pattern.MULTILINE|Pattern.DOTALL);
		Matcher tagMatcher = tagPattern.matcher(currentText);
		String keyRegex = "(CH|SS|US|KS)K@[%,~" + URLEncoder.getSafeURLCharacters() + "]+";
		Pattern keyPattern = Pattern.compile(keyRegex, Pattern.MULTILINE|Pattern.DOTALL);
		Matcher keyMatcher = keyPattern.matcher(currentText);
		Pattern oldQuotePattern = Pattern.compile("^(\\S+@\\S+?.freetalk) wrote:\n", Pattern.MULTILINE|Pattern.DOTALL);
		Matcher oldQuoteMatcher = oldQuotePattern.matcher(currentText);
		while (result.mConsumedLength < currentText.length()) {
			int tagPos = currentText.length();
			if (tagMatcher.find(result.mConsumedLength))
				tagPos = tagMatcher.start();
			int keyPos = currentText.length();
			if (keyMatcher.find(result.mConsumedLength))
				keyPos = keyMatcher.start();
			int oldQuotePos = currentText.length();
			if (oldQuoteMatcher.find(result.mConsumedLength))
				oldQuotePos = oldQuoteMatcher.start();
			int textEndPos = Math.min(Math.min(tagPos, keyPos),oldQuotePos);
			if (textEndPos > result.mConsumedLength)
			{
				TextElement newElement = new TextElement(TextElementType.PlainText);
				newElement.mContent = currentText.substring(result.mConsumedLength, textEndPos);
				newElement.mConsumedLength = textEndPos-result.mConsumedLength;
				result.mChildren.add(newElement);
				result.mConsumedLength += newElement.mConsumedLength;
			}
			if (textEndPos == currentText.length()) {
				break;
			}
			if (textEndPos == tagPos) {
				result.mConsumedLength += tagMatcher.group().length();
				String t = tagMatcher.group(1);
				String a = tagMatcher.group(2);
				if (t.equals("/"+tag))
					return result;
				if (t.substring(0,1).equals("/")) {
					TextElement newElement = new TextElement(TextElementType.Error);
					newElement.mContent = tagMatcher.group();
					newElement.mConsumedLength = newElement.mContent.length();
					result.mChildren.add(newElement);
				} else {
					TextElement subElement = parseText(currentText.substring(tagMatcher.end()), t, a);
					result.mChildren.add(subElement);
					result.mConsumedLength += subElement.mConsumedLength;
				}
			} else if (textEndPos == keyPos) {
				TextElement newElement = new TextElement(TextElementType.Key);
				newElement.mContent = keyMatcher.group();
				newElement.mConsumedLength = newElement.mContent.length();
				result.mChildren.add(newElement);
				result.mConsumedLength += newElement.mConsumedLength;
			} else if (textEndPos == oldQuotePos) {
				String author = oldQuoteMatcher.group(1);
				result.mConsumedLength += oldQuoteMatcher.group().length();
				Pattern endOfOldQuotePattern = Pattern.compile("^[^>]", Pattern.MULTILINE|Pattern.DOTALL);
				Matcher endOfOldQuoteMatcher = endOfOldQuotePattern.matcher(currentText);
				int endOfOldQuotePos = currentText.length();
				if (endOfOldQuoteMatcher.find(result.mConsumedLength))
					endOfOldQuotePos = endOfOldQuoteMatcher.start();
				String quoted = currentText.substring(result.mConsumedLength, endOfOldQuotePos);
				result.mConsumedLength += quoted.length();
				Pattern quotePartPattern = Pattern.compile("^>\\s*", Pattern.MULTILINE|Pattern.DOTALL);
				Matcher quotePartMatcher = quotePartPattern.matcher(quoted);
				String unquoted = quotePartMatcher.replaceAll("");
				TextElement subElement = parseText(unquoted, "quote", author);
				result.mChildren.add(subElement);
			}
		}
		return result;
	}
 | 
		private final TextElement parseText(String currentText, String tag, String arg) {
		TextElement result = new TextElement(tag);
		if(result.mType == TextElementType.Quote)
			result.mContent = arg;
		if (currentText.length() > 0) {
			if (currentText.substring(0,1).equals("\n")) {
				result.mConsumedLength++;
			}
		}
		Pattern tagPattern = Pattern.compile("\\[(.+?)(?:=\"?(.+?)\"?)?\\]", Pattern.MULTILINE|Pattern.DOTALL);
		Matcher tagMatcher = tagPattern.matcher(currentText);
		String keyRegex = "(CH|SS|US|KS)K@[%,~" + URLEncoder.getSafeURLCharacters() + "]+";
		Pattern keyPattern = Pattern.compile(keyRegex, Pattern.MULTILINE|Pattern.DOTALL);
		Matcher keyMatcher = keyPattern.matcher(currentText);
		Pattern oldQuotePattern = Pattern.compile("^(\\S+@\\S+?.freetalk) wrote:\n", Pattern.MULTILINE|Pattern.DOTALL);
		Matcher oldQuoteMatcher = oldQuotePattern.matcher(currentText);
		while (result.mConsumedLength < currentText.length()) {
			int tagPos = currentText.length();
			if (tagMatcher.find(result.mConsumedLength))
				tagPos = tagMatcher.start();
			int keyPos = currentText.length();
			if (keyMatcher.find(result.mConsumedLength))
				keyPos = keyMatcher.start();
			int oldQuotePos = currentText.length();
			if (oldQuoteMatcher.find(result.mConsumedLength))
				oldQuotePos = oldQuoteMatcher.start();
			int textEndPos = Math.min(Math.min(tagPos, keyPos),oldQuotePos);
			if (textEndPos > result.mConsumedLength)
			{
				TextElement newElement = new TextElement(TextElementType.PlainText);
				newElement.mContent = currentText.substring(result.mConsumedLength, textEndPos);
				newElement.mConsumedLength = textEndPos-result.mConsumedLength;
				result.mChildren.add(newElement);
				result.mConsumedLength += newElement.mConsumedLength;
			}
			if (textEndPos == currentText.length()) {
				break;
			}
			if (textEndPos == tagPos) {
				result.mConsumedLength += tagMatcher.group().length();
				String t = tagMatcher.group(1);
				String a = tagMatcher.group(2);
				if (t.equals("/"+tag))
					return result;
				if (t.substring(0,1).equals("/")) {
					TextElement newElement = new TextElement(TextElementType.Error);
					newElement.mContent = tagMatcher.group();
					newElement.mConsumedLength = newElement.mContent.length();
					result.mChildren.add(newElement);
				} else {
					TextElement subElement = parseText(currentText.substring(tagMatcher.end()), t, a);
					result.mChildren.add(subElement);
					result.mConsumedLength += subElement.mConsumedLength;
				}
			} else if (textEndPos == keyPos) {
				TextElement newElement = new TextElement(TextElementType.Key);
				newElement.mContent = keyMatcher.group();
				newElement.mConsumedLength = newElement.mContent.length();
				result.mChildren.add(newElement);
				result.mConsumedLength += newElement.mConsumedLength;
			} else if (textEndPos == oldQuotePos) {
				String author = oldQuoteMatcher.group(1);
				result.mConsumedLength += oldQuoteMatcher.group().length();
				Pattern endOfOldQuotePattern = Pattern.compile("^[^>]", Pattern.MULTILINE|Pattern.DOTALL);
				Matcher endOfOldQuoteMatcher = endOfOldQuotePattern.matcher(currentText);
				int endOfOldQuotePos = currentText.length();
				if (endOfOldQuoteMatcher.find(result.mConsumedLength))
					endOfOldQuotePos = endOfOldQuoteMatcher.start();
				String quoted = currentText.substring(result.mConsumedLength, endOfOldQuotePos);
				result.mConsumedLength += quoted.length();
				Pattern quotePartPattern = Pattern.compile("^>\\s*", Pattern.MULTILINE|Pattern.DOTALL);
				Matcher quotePartMatcher = quotePartPattern.matcher(quoted);
				String unquoted = quotePartMatcher.replaceAll("");
				TextElement subElement = parseText(unquoted, "quote", author);
				result.mChildren.add(subElement);
			}
		}
		return result;
	}
 | 
| 
	    public void testRegistration() {
        Page page = tester.startPage(RegisterPage.class);
        tester.assertRenderedPage(RegisterPage.class);
        PortalSession.get().getRights().add(new Right("captcha.disabled"));
        FormTester ft = tester.newFormTester("form");
        ft.setValue("username", "peterpan");
        ft.setValue("firstname", "mike");
        ft.setValue("lastname", "jack");
        ft.setValue("email", "[email protected]");
        ft.setValue("birthday", "1981-10-13");
        ft.setValue("password1", "testing");
        ft.setValue("password2", "testing");
        ft.setValue("termsOfUse", true);
        tester.executeAjaxEvent("form:registerButton", "onclick");
        tester.assertNoErrorMessage();
        tester.assertRenderedPage(MessagePage.class);
        tester.assertContains(page.getString("confirm.email"));
    }
 | 
	    public void testRegistration() {
        Page page = tester.startPage(RegisterPage.class);
        tester.assertRenderedPage(RegisterPage.class);
        PortalSession.get().getRights().add(new Right("captcha.disabled"));
        FormTester ft = tester.newFormTester("form");
        ft.setValue("username", "peterpan123");
        ft.setValue("firstname", "mike");
        ft.setValue("lastname", "jack");
        ft.setValue("email", "[email protected]");
        ft.setValue("birthday", "1981-10-13");
        ft.setValue("password1", "testing");
        ft.setValue("password2", "testing");
        ft.setValue("termsOfUse", true);
        tester.executeAjaxEvent("form:registerButton", "onclick");
        tester.assertNoErrorMessage();
        tester.assertRenderedPage(MessagePage.class);
        tester.assertContains(page.getString("confirm.email"));
    }
 | 
| 
	    public void draw(Canvas canvas) {
        if (mViews != null) {
            final int n = mViews.size();
            for (int i = 0; i < mCurrent; i++) {
                drawView(mViews.get(i), canvas);
            }
            for (int i = n - 1; i > mCurrent; i--) {
                drawView(mViews.get(i), canvas);
            }
            drawView(mViews.get(mCurrent), canvas);
        }
    }
 | 
	    public void draw(Canvas canvas) {
        if ((mViews != null) && (mCurrent > -1)) {
            final int n = mViews.size();
            for (int i = 0; i < mCurrent; i++) {
                drawView(mViews.get(i), canvas);
            }
            for (int i = n - 1; i > mCurrent; i--) {
                drawView(mViews.get(i), canvas);
            }
            drawView(mViews.get(mCurrent), canvas);
        }
    }
 | 
| 
		public void init(FMLInitializationEvent event)
	{
		System.out.println("Initilizing Sustainable Resources Mod  (SMR)");
		System.out.println("You are using a pre-alpha build! And peter fails :P");
	}
 | 
		public void init(FMLInitializationEvent event)
	{
		System.out.println("Initilizing Sustainable Resources Mod  (SMR)");
		System.out.println("You are using a pre-alpha build!");
	}
 | 
| 
	  public static void main (String [] args) {
      assert args.length > 5;
      int NUM_READERS = 5;
      int NUM_WRITERS = 1;
      final int N = Integer.parseInt(args[0]);
      final int R = Integer.parseInt(args[1]);
      int W = Integer.parseInt(args[2]);
      int K = Integer.parseInt(args[3]);
      assert K >= 1;
      int ITERATIONS = Integer.parseInt(args[4]);
      DelayModel delaymodel = null;
      if(args[5].equals("FILE"))
      {
          String sendDelayFile = args[6];
          String ackDelayFile = args[7];
          delaymodel = new EmpiricalDelayModel(sendDelayFile, ackDelayFile);
      }
      else if(args[5].equals("PARETO"))
      {
          delaymodel = new ParetoDelayModel(Double.parseDouble(args[6]),
                                       Double.parseDouble(args[7]),
                                       Double.parseDouble(args[8]),
                                       Double.parseDouble(args[9]));
      }
      else if(args[5].equals("MULTIDC"))
      {
          delaymodel = new MultiDCDelayModel(Double.parseDouble(args[6]),
                                       Double.parseDouble(args[7]),
                                       Double.parseDouble(args[8]),
                                       Double.parseDouble(args[9]),
                                       Double.parseDouble(args[10]),
                                       N);
      }
      else if(args[5].equals("EXPONENTIAL"))
      {
          delaymodel = new ExponentialDelayModel(Double.parseDouble(args[6]),
                                            Double.parseDouble(args[7]));
      }
      else
      {
          System.err.println(
             "Usage: Simulator <N> <R> <W> <k> <iters> FILE <sendF> <ackF> OPT\n" +
                     "Usage: Simulator <N> <R> <W> <iters> PARETO <W-min> <W-alpha> <ARS-min> <ARS-alpha> OPT\n" +
                     "Usage: Simulator <N> <R> <W> <iters> EXPONENTIAL <W-lambda> <ARS-lambda> OPT\n +" +
                     "Usage: Simulator <N> <R> <W> <iters> MULTIDC <W-min> <W-alpha> <ARS-min> <ARS-alpha> <DC-delay> OPT\n +" +
                     "OPT= O <SWEEP|LATS>");
          System.exit(1);
      }
      final DelayModel delay = delaymodel;
      String optsinput = "";
      for(int i = 0; i < args.length; ++i)
      {
          if(args[i].equals("O"))
          {
              optsinput = args[i+1];
              assert optsinput.equals("SWEEP") || optsinput.equals("LATS");
              break;
          }
      }
      final String opts = optsinput;
      final Vector<KVServer> replicas = new Vector<KVServer>();
      for(int i = 0; i < N; ++i)
      {
          replicas.add(new KVServer());
      }
      Vector<Double> writelats = new Vector<Double>();
      final ConcurrentLinkedQueue<Double> readlats = new ConcurrentLinkedQueue<Double>();
      HashMap<Integer, Double> commitTimes = new HashMap<Integer, Double>();
      Vector<WriteInstance> writes = new Vector<WriteInstance>();
      final CommitTimes commits = new CommitTimes();
      final ConcurrentLinkedQueue<ReadPlot> readPlotConcurrent = new ConcurrentLinkedQueue<ReadPlot>();
      double ltime = 0;
      double ftime = 1000;
      for(int wid = 0; wid < NUM_WRITERS; wid++)
      {
          double time = 0;
          for(int i = 0; i < ITERATIONS; ++i)
          {
              Vector<Double> oneways = new Vector<Double>();
              Vector<Double> rtts = new Vector<Double>();
              for(int w = 0; w < N; ++w)
              {
                  double oneway = delay.getWriteSendDelay();
                  double ack = delay.getWriteAckDelay();
                  oneways.add(time + oneway);
                  rtts.add(oneway + ack);
              }
              Collections.sort(rtts);
              double wlat = rtts.get(W-1);
              if(opts.equals("LATS"))
              {
                  writelats.add(wlat);
              }
              double committime = time+wlat;
              writes.add(new WriteInstance(oneways, time, committime));
              time = committime;
          }
          if(time > ltime)
              ltime = time;
          if(time < ftime)
              ftime = time;
      }
      final double maxtime = ltime;
      final double firsttime = ftime;
      Collections.sort(writes);
      for(int wno = 0; wno < writes.size(); ++wno)
      {
          WriteInstance curWrite = writes.get(wno);
          for(int sno = 0; sno < N; ++sno)
          {
              replicas.get(sno).write(curWrite.getOneway().get(sno), wno);
          }
          commits.record(curWrite.getCommittime(), wno);
      }
      final CountDownLatch latch = new CountDownLatch(NUM_READERS);
      for(int rid = 0; rid < NUM_READERS; ++rid)
      {
          Thread t = new Thread(new Runnable ()
          {
              public void run()
              {
                  double time = firsttime*2;
                  while(time < maxtime)
                  {
                      Vector<ReadInstance> readRound = new Vector<ReadInstance>();
                      for(int sno = 0; sno < N; ++sno)
                      {
                          double onewaytime = delay.getReadSendDelay();
                          int version = replicas.get(sno).read(time+onewaytime);
                          double rtt = onewaytime+delay.getReadAckDelay();
                          readRound.add(new ReadInstance(version, rtt));
                      }
                      Collections.sort(readRound);
                      double endtime = readRound.get(R-1).getFinishtime();
                      if(opts.equals("LATS"))
                      {
                          readlats.add(endtime);
                      }
                      int maxversion = -1;
                      for(int rno = 0; rno < R; ++rno)
                      {
                        int readVersion = readRound.get(rno).getVersion();
                        if(readVersion > maxversion)
                            maxversion = readVersion;
                      }
                      readPlotConcurrent.add(new ReadPlot(
                                        new ReadOutput(commits.last_committed_version(time), maxversion, time),
                                        commits.get_commit_time(commits.last_committed_version(time))));
                      int staleness = maxversion-commits.last_committed_version(time);
                      time += endtime;
                  }
                  latch.countDown();
              }
          });
          t.start();
      }
      try {
        latch.await();
      }
      catch (Exception e)
      {
          System.out.println(e.getMessage());
      }
      if(opts.equals("SWEEP"))
      {
          Vector<ReadPlot> readPlots = new Vector<ReadPlot>(readPlotConcurrent);
          Collections.sort(readPlots);
          Collections.reverse(readPlots);
          HashMap<Long, ReadPlot> manystalemap = new HashMap<Long, ReadPlot>();
          long stale = 0;
          for(ReadPlot r : readPlots)
          {
            if(r.getRead().getVersion_read() < r.getRead().getVersion_at_start()-K-1)
            {
                stale += 1;
                manystalemap.put(stale, r);
            }
          }
          for(double p = .9; p < 1; p += .001)
          {
              double tstale = 0;
              long how_many_stale = (long)Math.ceil(readPlots.size()*p);
              ReadPlot r = manystalemap.get(how_many_stale);
              if(r == null)
                  tstale = 0;
              else
                  tstale = r.getRead().getStart_time() - r.getCommit_time_at_start();
              System.out.println(p+" "+tstale);
          }
      }
      if(opts.equals("LATS"))
      {
          System.out.println("WRITE");
          Collections.sort(writelats);
          for(double p = 0; p < 1; p += .01)
          {
              System.out.printf("%f %f\n", p, writelats.get((int) Math.round(p * writelats.size())));
          }
          Vector<Double> readLatencies = new Vector<Double>(readlats);
          System.out.println("READ");
          Collections.sort(readLatencies);
          for(double p = 0; p < 1; p += .01)
          {
              System.out.printf("%f %f\n", p, readLatencies.get((int)Math.round(p*readLatencies.size())));
          }
      }
  }
 | 
	  public static void main (String [] args) {
      assert args.length > 5;
      int NUM_READERS = 5;
      int NUM_WRITERS = 1;
      final int N = Integer.parseInt(args[0]);
      final int R = Integer.parseInt(args[1]);
      int W = Integer.parseInt(args[2]);
      int K = Integer.parseInt(args[3]);
      assert K >= 1;
      int ITERATIONS = Integer.parseInt(args[4]);
      DelayModel delaymodel = null;
      if(args[5].equals("FILE"))
      {
          String sendDelayFile = args[6];
          String ackDelayFile = args[7];
          delaymodel = new EmpiricalDelayModel(sendDelayFile, ackDelayFile);
      }
      else if(args[5].equals("PARETO"))
      {
          delaymodel = new ParetoDelayModel(Double.parseDouble(args[6]),
                                       Double.parseDouble(args[7]),
                                       Double.parseDouble(args[8]),
                                       Double.parseDouble(args[9]));
      }
      else if(args[5].equals("MULTIDC"))
      {
          delaymodel = new MultiDCDelayModel(Double.parseDouble(args[6]),
                                       Double.parseDouble(args[7]),
                                       Double.parseDouble(args[8]),
                                       Double.parseDouble(args[9]),
                                       Double.parseDouble(args[10]),
                                       N);
      }
      else if(args[5].equals("EXPONENTIAL"))
      {
          delaymodel = new ExponentialDelayModel(Double.parseDouble(args[6]),
                                            Double.parseDouble(args[7]));
      }
      else
      {
          System.err.println(
             "Usage: Simulator <N> <R> <W> <k> <iters> FILE <sendF> <ackF> OPT\n" +
                     "Usage: Simulator <N> <R> <W> <iters> PARETO <W-min> <W-alpha> <ARS-min> <ARS-alpha> OPT\n" +
                     "Usage: Simulator <N> <R> <W> <iters> EXPONENTIAL <W-lambda> <ARS-lambda> OPT\n +" +
                     "Usage: Simulator <N> <R> <W> <iters> MULTIDC <W-min> <W-alpha> <ARS-min> <ARS-alpha> <DC-delay> OPT\n +" +
                     "OPT= O <SWEEP|LATS>");
          System.exit(1);
      }
      final DelayModel delay = delaymodel;
      String optsinput = "";
      for(int i = 0; i < args.length; ++i)
      {
          if(args[i].equals("O"))
          {
              optsinput = args[i+1];
              assert optsinput.equals("SWEEP") || optsinput.equals("LATS");
              break;
          }
      }
      final String opts = optsinput;
      final Vector<KVServer> replicas = new Vector<KVServer>();
      for(int i = 0; i < N; ++i)
      {
          replicas.add(new KVServer());
      }
      Vector<Double> writelats = new Vector<Double>();
      final ConcurrentLinkedQueue<Double> readlats = new ConcurrentLinkedQueue<Double>();
      HashMap<Integer, Double> commitTimes = new HashMap<Integer, Double>();
      Vector<WriteInstance> writes = new Vector<WriteInstance>();
      final CommitTimes commits = new CommitTimes();
      final ConcurrentLinkedQueue<ReadPlot> readPlotConcurrent = new ConcurrentLinkedQueue<ReadPlot>();
      double ltime = 0;
      double ftime = 1000;
      for(int wid = 0; wid < NUM_WRITERS; wid++)
      {
          double time = 0;
          for(int i = 0; i < ITERATIONS; ++i)
          {
              Vector<Double> oneways = new Vector<Double>();
              Vector<Double> rtts = new Vector<Double>();
              for(int w = 0; w < N; ++w)
              {
                  double oneway = delay.getWriteSendDelay();
                  double ack = delay.getWriteAckDelay();
                  oneways.add(time + oneway);
                  rtts.add(oneway + ack);
              }
              Collections.sort(rtts);
              double wlat = rtts.get(W-1);
              if(opts.equals("LATS"))
              {
                  writelats.add(wlat);
              }
              double committime = time+wlat;
              writes.add(new WriteInstance(oneways, time, committime));
              time = committime;
          }
          if(time > ltime)
              ltime = time;
          if(time < ftime)
              ftime = time;
      }
      final double maxtime = ltime;
      final double firsttime = ftime;
      Collections.sort(writes);
      for(int wno = 0; wno < writes.size(); ++wno)
      {
          WriteInstance curWrite = writes.get(wno);
          for(int sno = 0; sno < N; ++sno)
          {
              replicas.get(sno).write(curWrite.getOneway().get(sno), wno);
          }
          commits.record(curWrite.getCommittime(), wno);
      }
      final CountDownLatch latch = new CountDownLatch(NUM_READERS);
      for(int rid = 0; rid < NUM_READERS; ++rid)
      {
          Thread t = new Thread(new Runnable ()
          {
              public void run()
              {
                  double time = firsttime*2;
                  while(time < maxtime)
                  {
                      Vector<ReadInstance> readRound = new Vector<ReadInstance>();
                      for(int sno = 0; sno < N; ++sno)
                      {
                          double onewaytime = delay.getReadSendDelay();
                          int version = replicas.get(sno).read(time+onewaytime);
                          double rtt = onewaytime+delay.getReadAckDelay();
                          readRound.add(new ReadInstance(version, rtt));
                      }
                      Collections.sort(readRound);
                      double endtime = readRound.get(R-1).getFinishtime();
                      if(opts.equals("LATS"))
                      {
                          readlats.add(endtime);
                      }
                      int maxversion = -1;
                      for(int rno = 0; rno < R; ++rno)
                      {
                        int readVersion = readRound.get(rno).getVersion();
                        if(readVersion > maxversion)
                            maxversion = readVersion;
                      }
                      readPlotConcurrent.add(new ReadPlot(
                                        new ReadOutput(commits.last_committed_version(time), maxversion, time),
                                        commits.get_commit_time(commits.last_committed_version(time))));
                      int staleness = maxversion-commits.last_committed_version(time);
                      time += endtime;
                  }
                  latch.countDown();
              }
          });
          t.start();
      }
      try {
        latch.await();
      }
      catch (Exception e)
      {
          System.out.println(e.getMessage());
      }
      if(opts.equals("SWEEP"))
      {
          Vector<ReadPlot> readPlots = new Vector<ReadPlot>(readPlotConcurrent);
          Collections.sort(readPlots);
          Collections.reverse(readPlots);
          HashMap<Long, ReadPlot> manystalemap = new HashMap<Long, ReadPlot>();
          long stale = 0;
          for(ReadPlot r : readPlots)
          {
            if(r.getRead().getVersion_read() < r.getRead().getVersion_at_start()-K-1)
            {
                stale += 1;
                manystalemap.put(stale, r);
            }
          }
          for(double p = .9; p < 1; p += .001)
          {
              double tstale = 0;
              long how_many_stale = (long)Math.ceil(readPlots.size()*(1-p));
              ReadPlot r = manystalemap.get(how_many_stale);
              if(r == null)
                  tstale = 0;
              else
                  tstale = r.getRead().getStart_time() - r.getCommit_time_at_start();
              System.out.println(p+" "+tstale);
          }
      }
      if(opts.equals("LATS"))
      {
          System.out.println("WRITE");
          Collections.sort(writelats);
          for(double p = 0; p < 1; p += .01)
          {
              System.out.printf("%f %f\n", p, writelats.get((int) Math.round(p * writelats.size())));
          }
          Vector<Double> readLatencies = new Vector<Double>(readlats);
          System.out.println("READ");
          Collections.sort(readLatencies);
          for(double p = 0; p < 1; p += .01)
          {
              System.out.printf("%f %f\n", p, readLatencies.get((int)Math.round(p*readLatencies.size())));
          }
      }
  }
 | 
| 
	    public void execute(final ScheduledJob scheduledJob) {
        final SystemHelper systemHelper = SingletonS2Container
                .getComponent(SystemHelper.class);
        final JobLog jobLog = new JobLog(scheduledJob);
        final String scriptType = scheduledJob.getScriptType();
        final String script = scheduledJob.getScriptData();
        final Long id = scheduledJob.getId();
        final String jobId = Constants.JOB_ID_PREFIX + id;
        final JobExecutor jobExecutor = SingletonS2Container
                .getComponent(scriptType + JOB_EXECUTOR_SUFFIX);
        if (jobExecutor == null) {
            throw new ScheduledJobException("No jobExecutor: " + scriptType
                    + JOB_EXECUTOR_SUFFIX);
        }
        if (systemHelper.startJobExecutoer(id, jobExecutor) != null) {
            if (logger.isDebugEnabled()) {
                logger.debug(jobId + " is running.");
            }
            return;
        }
        try {
            if (scheduledJob.isLoggingEnabled()) {
                storeJobLog(jobLog);
            }
            if (logger.isDebugEnabled()) {
                logger.debug("Starting Job " + jobId + ". scriptType: "
                        + scriptType + ", script: " + script);
            } else if (logger.isInfoEnabled()) {
                logger.info("Starting Job " + jobId + ".");
            }
            final Object ret = jobExecutor.execute(script);
            if (ret == null) {
                logger.info("Finished Job " + jobId + ".");
            } else {
                logger.info("Finished Job " + jobId
                        + ". The return value is:\n" + ret);
                jobLog.setScriptResult(ret.toString());
            }
            jobLog.setJobStatus(Constants.OK);
        } catch (final Throwable e) {
            logger.error("Failed to execute " + jobId + ": " + script, e);
            jobLog.setJobStatus(Constants.FAIL);
            jobLog.setScriptResult(systemHelper.abbreviateLongText(e
                    .getLocalizedMessage()));
        } finally {
            systemHelper.finishJobExecutoer(id);
            jobLog.setEndTime(new Timestamp(System.currentTimeMillis()));
            if (logger.isDebugEnabled()) {
                logger.debug("jobLog: " + jobLog);
            }
            if (scheduledJob.isLoggingEnabled()) {
                storeJobLog(jobLog);
            }
        }
    }
 | 
	    public void execute(final ScheduledJob scheduledJob) {
        final SystemHelper systemHelper = SingletonS2Container
                .getComponent(SystemHelper.class);
        final JobLog jobLog = new JobLog(scheduledJob);
        final String scriptType = scheduledJob.getScriptType();
        final String script = scheduledJob.getScriptData();
        final Long id = scheduledJob.getId();
        final String jobId = Constants.JOB_ID_PREFIX + id;
        final JobExecutor jobExecutor = SingletonS2Container
                .getComponent(scriptType + JOB_EXECUTOR_SUFFIX);
        if (jobExecutor == null) {
            throw new ScheduledJobException("No jobExecutor: " + scriptType
                    + JOB_EXECUTOR_SUFFIX);
        }
        if (systemHelper.startJobExecutoer(id, jobExecutor) != null) {
            if (logger.isDebugEnabled()) {
                logger.debug(jobId + " is running.");
            }
            return;
        }
        try {
            if (scheduledJob.isLoggingEnabled()) {
                storeJobLog(jobLog);
            }
            if (logger.isDebugEnabled()) {
                logger.debug("Starting Job " + jobId + ". scriptType: "
                        + scriptType + ", script: " + script);
            } else if (scheduledJob.isLoggingEnabled()
                    && logger.isInfoEnabled()) {
                logger.info("Starting Job " + jobId + ".");
            }
            final Object ret = jobExecutor.execute(script);
            if (ret == null) {
                if (scheduledJob.isLoggingEnabled() && logger.isInfoEnabled()) {
                    logger.info("Finished Job " + jobId + ".");
                }
            } else {
                if (scheduledJob.isLoggingEnabled() && logger.isInfoEnabled()) {
                    logger.info("Finished Job " + jobId
                            + ". The return value is:\n" + ret);
                }
                jobLog.setScriptResult(ret.toString());
            }
            jobLog.setJobStatus(Constants.OK);
        } catch (final Throwable e) {
            logger.error("Failed to execute " + jobId + ": " + script, e);
            jobLog.setJobStatus(Constants.FAIL);
            jobLog.setScriptResult(systemHelper.abbreviateLongText(e
                    .getLocalizedMessage()));
        } finally {
            systemHelper.finishJobExecutoer(id);
            jobLog.setEndTime(new Timestamp(System.currentTimeMillis()));
            if (logger.isDebugEnabled()) {
                logger.debug("jobLog: " + jobLog);
            }
            if (scheduledJob.isLoggingEnabled()) {
                storeJobLog(jobLog);
            }
        }
    }
 | 
| 
	    public static void init() {
        oi = new OI();
        SmartDashboard.putData(driveTrain);
        SmartDashboard.putData(shooter);
        SmartDashboard.putdata(feeder);
    }
 | 
	    public static void init() {
        oi = new OI();
        SmartDashboard.putData(driveTrain);
        SmartDashboard.putData(shooter);
        SmartDashboard.putData(feeder);
    }
 | 
| 
	    protected boolean processCharacters( HWPFDocumentCore document,
            int currentTableLevel, Range range, final Element block )
    {
        if ( range == null )
            return false;
        boolean haveAnyText = false;
        if ( document instanceof HWPFDocument )
        {
            final HWPFDocument doc = (HWPFDocument) document;
            Map<Integer, List<Bookmark>> rangeBookmarks = doc.getBookmarks()
                    .getBookmarksStartedBetween( range.getStartOffset(),
                            range.getEndOffset() );
            if ( rangeBookmarks != null && !rangeBookmarks.isEmpty() )
            {
                boolean processedAny = processRangeBookmarks( doc,
                        currentTableLevel, range, block, rangeBookmarks );
                if ( processedAny )
                    return true;
            }
        }
        for ( int c = 0; c < range.numCharacterRuns(); c++ )
        {
            CharacterRun characterRun = range.getCharacterRun( c );
            if ( characterRun == null )
                throw new AssertionError();
            if ( document instanceof HWPFDocument
                    && ( (HWPFDocument) document ).getPicturesTable()
                            .hasPicture( characterRun ) )
            {
                HWPFDocument newFormat = (HWPFDocument) document;
                Picture picture = newFormat.getPicturesTable().extractPicture(
                        characterRun, true );
                processImage( block, characterRun.text().charAt( 0 ) == 0x01,
                        picture );
                continue;
            }
            String text = characterRun.text();
            if ( text.getBytes().length == 0 )
                continue;
            if ( characterRun.isSpecialCharacter() )
            {
                if ( text.charAt( 0 ) == SPECCHAR_AUTONUMBERED_FOOTNOTE_REFERENCE
                        && ( document instanceof HWPFDocument ) )
                {
                    HWPFDocument doc = (HWPFDocument) document;
                    processNoteAnchor( doc, characterRun, block );
                    continue;
                }
            }
            if ( text.getBytes()[0] == FIELD_BEGIN_MARK )
            {
                if ( document instanceof HWPFDocument )
                {
                    Field aliveField = ( (HWPFDocument) document )
                            .getFieldsTables().lookupFieldByStartOffset(
                                    FieldsDocumentPart.MAIN,
                                    characterRun.getStartOffset() );
                    if ( aliveField != null )
                    {
                        processField( ( (HWPFDocument) document ), range,
                                currentTableLevel, aliveField, block );
                        int continueAfter = aliveField.getFieldEndOffset();
                        while ( c < range.numCharacterRuns()
                                && range.getCharacterRun( c ).getEndOffset() <= continueAfter )
                            c++;
                        if ( c < range.numCharacterRuns() )
                            c--;
                        continue;
                    }
                }
                int skipTo = tryDeadField( document, range, currentTableLevel,
                        c, block );
                if ( skipTo != c )
                {
                    c = skipTo;
                    continue;
                }
                continue;
            }
            if ( text.getBytes()[0] == FIELD_SEPARATOR_MARK )
            {
                continue;
            }
            if ( text.getBytes()[0] == FIELD_END_MARK )
            {
                continue;
            }
            if ( characterRun.isSpecialCharacter() || characterRun.isObj()
                    || characterRun.isOle2() )
            {
                continue;
            }
            if ( text.endsWith( "\r" )
                    || ( text.charAt( text.length() - 1 ) == BEL_MARK && currentTableLevel != Integer.MIN_VALUE ) )
                text = text.substring( 0, text.length() - 1 );
            {
                StringBuilder stringBuilder = new StringBuilder();
                for ( char charChar : text.toCharArray() )
                {
                    if ( charChar == 11 )
                    {
                        if ( stringBuilder.length() > 0 )
                        {
                            outputCharacters( block, characterRun,
                                    stringBuilder.toString() );
                            stringBuilder.setLength( 0 );
                        }
                        processLineBreak( block, characterRun );
                    }
                    else if ( charChar == 30 )
                    {
                        stringBuilder.append( UNICODECHAR_NONBREAKING_HYPHEN );
                    }
                    else if ( charChar == 31 )
                    {
                        stringBuilder.append( UNICODECHAR_ZERO_WIDTH_SPACE );
                    }
                    else if ( charChar > 0x20 || charChar == 0x09
                            || charChar == 0x0A || charChar == 0x0D )
                    {
                        stringBuilder.append( charChar );
                    }
                }
                if ( stringBuilder.length() > 0 )
                {
                    outputCharacters( block, characterRun,
                            stringBuilder.toString() );
                    stringBuilder.setLength( 0 );
                }
            }
            haveAnyText |= text.trim().length() != 0;
        }
        return haveAnyText;
    }
 | 
	    protected boolean processCharacters( HWPFDocumentCore document,
            int currentTableLevel, Range range, final Element block )
    {
        if ( range == null )
            return false;
        boolean haveAnyText = false;
        if ( document instanceof HWPFDocument )
        {
            final HWPFDocument doc = (HWPFDocument) document;
            Map<Integer, List<Bookmark>> rangeBookmarks = doc.getBookmarks()
                    .getBookmarksStartedBetween( range.getStartOffset(),
                            range.getEndOffset() );
            if ( rangeBookmarks != null && !rangeBookmarks.isEmpty() )
            {
                boolean processedAny = processRangeBookmarks( doc,
                        currentTableLevel, range, block, rangeBookmarks );
                if ( processedAny )
                    return true;
            }
        }
        for ( int c = 0; c < range.numCharacterRuns(); c++ )
        {
            CharacterRun characterRun = range.getCharacterRun( c );
            if ( characterRun == null )
                throw new AssertionError();
            if ( document instanceof HWPFDocument
                    && ( (HWPFDocument) document ).getPicturesTable()
                            .hasPicture( characterRun ) )
            {
                HWPFDocument newFormat = (HWPFDocument) document;
                Picture picture = newFormat.getPicturesTable().extractPicture(
                        characterRun, true );
                processImage( block, characterRun.text().charAt( 0 ) == 0x01,
                        picture );
                continue;
            }
            String text = characterRun.text();
            if ( text.getBytes().length == 0 )
                continue;
            if ( characterRun.isSpecialCharacter() )
            {
                if ( text.charAt( 0 ) == SPECCHAR_AUTONUMBERED_FOOTNOTE_REFERENCE
                        && ( document instanceof HWPFDocument ) )
                {
                    HWPFDocument doc = (HWPFDocument) document;
                    processNoteAnchor( doc, characterRun, block );
                    continue;
                }
            }
            if ( text.getBytes()[0] == FIELD_BEGIN_MARK )
            {
                if ( document instanceof HWPFDocument )
                {
                    Field aliveField = ( (HWPFDocument) document )
                            .getFieldsTables().lookupFieldByStartOffset(
                                    FieldsDocumentPart.MAIN,
                                    characterRun.getStartOffset() );
                    if ( aliveField != null )
                    {
                        processField( ( (HWPFDocument) document ), range,
                                currentTableLevel, aliveField, block );
                        int continueAfter = aliveField.getFieldEndOffset();
                        while ( c < range.numCharacterRuns()
                                && range.getCharacterRun( c ).getEndOffset() <= continueAfter )
                            c++;
                        if ( c < range.numCharacterRuns() )
                            c--;
                        continue;
                    }
                }
                int skipTo = tryDeadField( document, range, currentTableLevel,
                        c, block );
                if ( skipTo != c )
                {
                    c = skipTo;
                    continue;
                }
                continue;
            }
            if ( text.getBytes()[0] == FIELD_SEPARATOR_MARK )
            {
                continue;
            }
            if ( text.getBytes()[0] == FIELD_END_MARK )
            {
                continue;
            }
            if ( characterRun.isSpecialCharacter() || characterRun.isObj()
                    || characterRun.isOle2() )
            {
                continue;
            }
            if ( text.endsWith( "\r" )
                    || ( text.charAt( text.length() - 1 ) == BEL_MARK && currentTableLevel != Integer.MIN_VALUE ) )
                text = text.substring( 0, text.length() - 1 );
            {
                StringBuilder stringBuilder = new StringBuilder();
                for ( char charChar : text.toCharArray() )
                {
                    if ( charChar == 11 )
                    {
                        if ( stringBuilder.length() > 0 )
                        {
                            outputCharacters( block, characterRun,
                                    stringBuilder.toString() );
                            stringBuilder.setLength( 0 );
                        }
                        processLineBreak( block, characterRun );
                    }
                    else if ( charChar == 30 )
                    {
                        stringBuilder.append( UNICODECHAR_NONBREAKING_HYPHEN );
                    }
                    else if ( charChar == 31 )
                    {
                        stringBuilder.append( UNICODECHAR_ZERO_WIDTH_SPACE );
                    }
                    else if ( charChar >= 0x20 || charChar == 0x09
                            || charChar == 0x0A || charChar == 0x0D )
                    {
                        stringBuilder.append( charChar );
                    }
                }
                if ( stringBuilder.length() > 0 )
                {
                    outputCharacters( block, characterRun,
                            stringBuilder.toString() );
                    stringBuilder.setLength( 0 );
                }
            }
            haveAnyText |= text.trim().length() != 0;
        }
        return haveAnyText;
    }
 | 
| 
	    public String getSelector() {
        buildEngineMap();
        if (_engines.isEmpty())
            return "<b>No search engines specified</b>";
        String dflt = _context.getProperty(PROP_DEFAULT);
        if (dflt == null || !_engines.containsKey(dflt)) {
            int idx = _context.random().nextInt(_engines.size());
            int i = 0;
            for (String name : _engines.keySet()) {
                dflt = name;
                if (i++ >= idx) {
                    _context.router().saveConfig(PROP_DEFAULT, dflt);
                    break;
                }
            }
        }
        StringBuilder buf = new StringBuilder(1024);
        buf.append("<select name=\"engine\">");
        for (String name : _engines.keySet()) {
            buf.append("<option value=\"").append(name).append('\"');
            if (name.equals(dflt))
                buf.append(" selected=\"true\"");
            buf.append('>').append(name).append("</option>\n");
        }
        buf.append("</select>\n");
        return buf.toString();
    }
 | 
	    public String getSelector() {
        buildEngineMap();
        if (_engines.isEmpty())
            return "<b>No search engines specified</b>";
        String dflt = _context.getProperty(PROP_DEFAULT);
        if (dflt == null || !_engines.containsKey(dflt)) {
            int idx = _context.random().nextInt(_engines.size());
            int i = 0;
            for (String name : _engines.keySet()) {
                dflt = name;
                if (i++ >= idx) {
                    _context.router().saveConfig(PROP_DEFAULT, dflt);
                    break;
                }
            }
        }
        StringBuilder buf = new StringBuilder(1024);
        buf.append("<select name=\"engine\">");
        for (String name : _engines.keySet()) {
            buf.append("<option value=\"").append(name).append('\"');
            if (name.equals(dflt))
                buf.append(" selected=\"selected\"");
            buf.append('>').append(name).append("</option>\n");
        }
        buf.append("</select>\n");
        return buf.toString();
    }
 | 
| 
		public void save(){
		Iterator<SaveCommand> siter = saveCommands.iterator();
		int previousCommand = -1;
		int count = 0;
		while(siter.hasNext()){
			this.progress = (int)((double)count / (double)this.saveCommands.size() * 100);
			this.mapDel.setProgressBarValue(this.progress, "Saving Map");
			count++;
			SaveCommand tempCo = siter.next();
			if(tempCo.getCommand() == SaveCommand.COPY_COMMAND){
				this.saveCurrentChunks();
				this.mapChunksE = null;
				try {
					MapChunkExtended copyFrom = new MapChunkExtended(tempCo.getChunkA());
					MapChunkExtended copyTo = new MapChunkExtended(tempCo.getChunkB());
					copyTo.copy(copyFrom);
					copyTo.save();
				} catch (IOException e) {
					e.printStackTrace();
				}
			}
			if(tempCo.getCommand() == SaveCommand.DELETE_COMMAND){
				System.out.println("Delete Command");
				this.deleteCommands.add(tempCo);
			}
			if(tempCo.getCommand() != SaveCommand.ADD_BLOCKS_COMMAND ||
				tempCo.getCommand() != SaveCommand.CHANGE_HEIGHT_COMMAND){
				continue;
            }
				if(this.mapChunksE == null){
					this.mapChunksE = new HashMap<String, LinkedList<SaveCommand>>();
				}
				if(!this.mapChunksE.containsKey(tempCo.getChunkA())){
					LinkedList<SaveCommand> tempList = new LinkedList<SaveCommand>();
					tempList.add(tempCo);
					this.mapChunksE.put(tempCo.getChunkA(), tempList);
				}
				else{
					this.mapChunksE.get(tempCo.getChunkA()).add(tempCo);
				}
			}
		this.saveCurrentChunks();
		this.delete();
		this.mapDel.progressBarComplete("Finished Saving");
	}
 | 
		public void save(){
		Iterator<SaveCommand> siter = saveCommands.iterator();
		int previousCommand = -1;
		int count = 0;
		while(siter.hasNext()){
			this.progress = (int)((double)count / (double)this.saveCommands.size() * 100);
			this.mapDel.setProgressBarValue(this.progress, "Saving Map");
			count++;
			SaveCommand tempCo = siter.next();
			if(tempCo.getCommand() == SaveCommand.COPY_COMMAND){
				this.saveCurrentChunks();
				this.mapChunksE = null;
				try {
					MapChunkExtended copyFrom = new MapChunkExtended(tempCo.getChunkA());
					MapChunkExtended copyTo = new MapChunkExtended(tempCo.getChunkB());
					copyTo.copy(copyFrom);
					copyTo.save();
				} catch (IOException e) {
					e.printStackTrace();
				}
			}
			if(tempCo.getCommand() == SaveCommand.DELETE_COMMAND){
				System.out.println("Delete Command");
				this.deleteCommands.add(tempCo);
			}
			if(tempCo.getCommand() != SaveCommand.ADD_BLOCKS_COMMAND &&
				tempCo.getCommand() != SaveCommand.CHANGE_HEIGHT_COMMAND){
				continue;
            }
			if(this.mapChunksE == null){
				this.mapChunksE = new HashMap<String, LinkedList<SaveCommand>>();
			}
			if(!this.mapChunksE.containsKey(tempCo.getChunkA())){
				LinkedList<SaveCommand> tempList = new LinkedList<SaveCommand>();
				tempList.add(tempCo);
				this.mapChunksE.put(tempCo.getChunkA(), tempList);
			} else {
				this.mapChunksE.get(tempCo.getChunkA()).add(tempCo);
			}
		}
		this.saveCurrentChunks();
		this.delete();
		this.mapDel.progressBarComplete("Finished Saving");
	}
 | 
| 
	    public SessionProvider(
        Registry registry,
        MBeanService mBeanService,
        @SessionCache Cache<?, ?> cache,
        @BackgroundScheduler ScheduledExecutorService scheduler,
        @Named(IpcSessionConfig.EXPIRATION_TIME) long time,
        @Named(IpcSessionConfig.EXPIRATION_TIME_UNIT) TimeUnit timeUnit) {
        this.registry = Preconditions.checkNotNull(registry, "Registry");
        this.mBeanService = Preconditions.checkNotNull(mBeanService, "MBeanService");
        this.cache = (Cache<Session.Key, IpcSession>) Preconditions.checkNotNull(cache, "Cache");
        this.scheduler = Preconditions.checkNotNull(scheduler, "Scheduler");
        this.expirationTime = time;
        this.expirationTimeUnit = Preconditions.checkNotNull(timeUnit, "TimeUnit");
    }
 | 
	    public SessionProvider(
        Registry registry,
        MBeanService mBeanService,
        @SuppressWarnings("rawtypes") @SessionCache Cache cache,
        @BackgroundScheduler ScheduledExecutorService scheduler,
        @Named(IpcSessionConfig.EXPIRATION_TIME) long time,
        @Named(IpcSessionConfig.EXPIRATION_TIME_UNIT) TimeUnit timeUnit) {
        this.registry = Preconditions.checkNotNull(registry, "Registry");
        this.mBeanService = Preconditions.checkNotNull(mBeanService, "MBeanService");
        this.cache = (Cache<Session.Key, IpcSession>) Preconditions.checkNotNull(cache, "Cache");
        this.scheduler = Preconditions.checkNotNull(scheduler, "Scheduler");
        this.expirationTime = time;
        this.expirationTimeUnit = Preconditions.checkNotNull(timeUnit, "TimeUnit");
    }
 | 
| 
		private synchronized void broadcastTags(Intent intent) {
		TagCache cache = app.getTagCache();
		synchronized(cache) {
			Integer currentNestId = Integer.valueOf(intent.getIntExtra(BUNDLE_NEST_ID, -1));
			List<String> out = new ArrayList<String>();
			Set<String> lt = cache.getLocalTags(currentNestId);
			if(lt != null) {
				out.addAll(lt);
			}
			String[] rt = cache.getRemoteTags(currentNestId);
			if(rt != null) {
				for(String tag : rt) {
					out.add(tag);
				}
			}
			Intent broadcastIntent = new Intent(ACTION_AUTOCOMPLETE_TAGS);
			broadcastIntent.putExtra(BUNDLE_NEST_ID, currentNestId);
			broadcastIntent.putExtra(BUNDLE_TAG_LIST, out.toArray(new String[out.size()]));
			mLocalBroadcastManager.sendBroadcast(broadcastIntent);
			broadcastIntent.putExtra(BUNDLE_NEST_ID, currentNestId);
			broadcastIntent = new Intent(ACTION_LAST_USED_TAGS);
			String[] tags = cache.getLastUsedTags(currentNestId);
			if(tags == null) {
				tags = new String[0];
			}
			broadcastIntent.putExtra(BUNDLE_TAG_LIST, tags);
			mLocalBroadcastManager.sendBroadcast(broadcastIntent);
		}
	}
 | 
		private synchronized void broadcastTags(Intent intent) {
		TagCache cache = app.getTagCache();
		synchronized(cache) {
			Integer currentNestId = Integer.valueOf(intent.getIntExtra(BUNDLE_NEST_ID, -1));
			Set<String> out;
			Set<String> lt = cache.getLocalTags(currentNestId);
			if(lt != null) {
				out = new HashSet<String>(lt);
			} else {
				out = new HashSet<String>();
			}
			String[] rt = cache.getRemoteTags(currentNestId);
			if(rt != null) {
				for(String tag : rt) {
					out.add(tag);
				}
			}
			Intent broadcastIntent = new Intent(ACTION_AUTOCOMPLETE_TAGS);
			broadcastIntent.putExtra(BUNDLE_NEST_ID, currentNestId);
			broadcastIntent.putExtra(BUNDLE_TAG_LIST, out.toArray(new String[out.size()]));
			mLocalBroadcastManager.sendBroadcast(broadcastIntent);
			broadcastIntent.putExtra(BUNDLE_NEST_ID, currentNestId);
			broadcastIntent = new Intent(ACTION_LAST_USED_TAGS);
			String[] tags = cache.getLastUsedTags(currentNestId);
			if(tags == null) {
				tags = new String[0];
			}
			broadcastIntent.putExtra(BUNDLE_TAG_LIST, tags);
			mLocalBroadcastManager.sendBroadcast(broadcastIntent);
		}
	}
 | 
| 
		protected void onHandleIntent(Intent intent) {	
		long now = java.lang.System.currentTimeMillis();
		SharedPreferences settings=PreferenceManager.getDefaultSharedPreferences(this);
		long last = settings.getLong("lastDataUpdate", 0);
		boolean updateNeeded = false;
		if (last == 0) {
			updateNeeded = true;
			Log.d("UPDATE","Yes, never updated before");			
		} else if (now > last) {
			Log.d("UPDATEDATENOW",Long.toString(now));
			Log.d("UPDATEDATELAST",Long.toString(last));
			Log.d("UPDATEDATEMINUS",Long.toString(now - last));
			ConnectivityManager connManager = (ConnectivityManager) getSystemService(CONNECTIVITY_SERVICE);
			NetworkInfo mWifi = connManager.getNetworkInfo(ConnectivityManager.TYPE_WIFI);
			long interval;
			if (mWifi.isConnected()) {
				Log.d("UPDATE","WiFi Connected so 1 week");
				interval = 1000*60*60*24*7;
			} else {
				Log.d("UPDATE","No WiFi so 1 month");
				interval = 1000*60*60*24*7;
			}
			if ((now - last) > interval) {
				updateNeeded = true;
				Log.d("UPDATE","Yes, to old");
			}        	
		} else {
			updateNeeded = true;
			Log.d("UPDATE","Yes, clock has run backwards");
		}
		if (updateNeeded) {
			startService(new Intent(this, LoadDataService.class));
		}
	}
 | 
		protected void onHandleIntent(Intent intent) {	
		long now = java.lang.System.currentTimeMillis();
		SharedPreferences settings=PreferenceManager.getDefaultSharedPreferences(this);
		long last = settings.getLong("lastDataUpdate", 0);
		boolean updateNeeded = false;
		if (last == 0) {
			updateNeeded = true;
			Log.d("UPDATE","Yes, never updated before");			
		} else if (now > last) {
			Log.d("UPDATEDATENOW",Long.toString(now));
			Log.d("UPDATEDATELAST",Long.toString(last));
			Log.d("UPDATEDATEMINUS",Long.toString(now - last));
			ConnectivityManager connManager = (ConnectivityManager) getSystemService(CONNECTIVITY_SERVICE);
			NetworkInfo mWifi = connManager.getNetworkInfo(ConnectivityManager.TYPE_WIFI);
			long interval;
			if (mWifi.isConnected()) {
				Log.d("UPDATE","WiFi Connected so 1 week");
				interval = 1000*60*60*24*7;
			} else {
				Log.d("UPDATE","No WiFi so 1 month");
				interval = 1000*60*60*24*30;
			}
			if ((now - last) > interval) {
				updateNeeded = true;
				Log.d("UPDATE","Yes, to old");
			}        	
		} else {
			updateNeeded = true;
			Log.d("UPDATE","Yes, clock has run backwards");
		}
		if (updateNeeded) {
			startService(new Intent(this, LoadDataService.class));
		}
	}
 | 
| 
		public static int processSum(ResultSet result, int sample_size, int db_size) throws SQLException {
		HashMap<Integer, Integer> frequencies = new HashMap<Integer, Integer>();
		Integer k;
		Integer v;
		int sum = 0;
		int s = 0;
		while (result.next()) {
			k = new Integer(result.getInt("value"));
			if (frequencies.containsKey(k)) {
				v = frequencies.get(k);
				frequencies.put(k, new Integer(++v));
			} else
				frequencies.put(k, new Integer(1));
			s++;
		}
		System.out.println(s);
		Iterator<Map.Entry<Integer, Integer>> it = frequencies.entrySet().iterator();
		while (it.hasNext()) {
			Entry<Integer, Integer> entry = (Entry<Integer, Integer>) it.next();
			sum += entry.getKey() * (entry.getValue() / (double)sample_size) * db_size;
		}
		return sum;
	}
 | 
		public static long processSum(ResultSet result, int sample_size, int db_size) throws SQLException {
		HashMap<Integer, Integer> frequencies = new HashMap<Integer, Integer>();
		Integer k;
		Integer v;
		long sum = 0;
		int s = 0;
		while (result.next()) {
			k = new Integer(result.getInt("value"));
			if (frequencies.containsKey(k)) {
				v = frequencies.get(k);
				frequencies.put(k, new Integer(++v));
			} else
				frequencies.put(k, new Integer(1));
			s++;
		}
		System.out.println(s);
		Iterator<Map.Entry<Integer, Integer>> it = frequencies.entrySet().iterator();
		while (it.hasNext()) {
			Entry<Integer, Integer> entry = (Entry<Integer, Integer>) it.next();
			sum += entry.getKey() * (entry.getValue() / (double)sample_size) * db_size;
		}
		return sum;
	}
 | 
| 
	    public User(String email_, String password_, String firstname_, String lastname_, String question_, String answer_)
    {
        this.email_ = email_;
        this.password_ = password_;
        this.firstname_ = firstname_;
        this.lastname_ = lastname_;
        this.question_ = question_;
        this.answer_ = answer_;
        if (User.count() == 0)
        {
            this.admin_ = true;
        }
        else
        {
            this.admin_ = true;
        }
    }
 | 
	    public User(String email_, String password_, String firstname_, String lastname_, String question_, String answer_)
    {
        this.email_ = email_;
        this.password_ = password_;
        this.firstname_ = firstname_;
        this.lastname_ = lastname_;
        this.question_ = question_;
        this.answer_ = answer_;
        if (User.count() == 0)
        {
            this.admin_ = true;
        }
        else
        {
            this.admin_ = false;
        }
    }
 | 
| 
		public void completeJoblet(int jobletId, JobletResult result,
			String logMessage) throws TransportException, InvalidApiKey,
			InvalidJobletId {
		log.trace("completeJoblet()");
		Joblet joblet = readJoblet(jobletId);
		joblet.setStatus(result.getStatus());
		dao.update(joblet);
		result.setJoblet(joblet);
		result.setTimeCreated(System.currentTimeMillis());
		dao.create(result);
		if ((logMessage != null) && (logMessage.length() > 0)) {
			JobletLogEntry log = new JobletLogEntry(0, joblet, logMessage);
			dao.create(log);
		}
		Criteria crit = queryDAO.createCriteria(Joblet.class);
		crit.add(Restrictions.eq("jobId", joblet.getJobId()));
		crit.add(Restrictions.or(
				Restrictions.eq("status", JOB_STATUS.RECEIVED), Restrictions
						.or(Restrictions.eq("status", JOB_STATUS.QUEUED),
								Restrictions
										.eq("status", JOB_STATUS.PROCESSING))));
		crit.setProjection(Projections.rowCount());
		int active = ((Integer) crit.list().get(0)).intValue();
		if (active == 0) {
			Query query = queryDAO
					.createQuery("update Joblet set status = ? where (jobId = ? and status = ?)");
			query.setInteger(0, JOB_STATUS.RECEIVED);
			query.setInteger(1, joblet.getJobId());
			query.setInteger(2, JOB_STATUS.SAVED);
			active = query.executeUpdate();
		}
		if (active == 0) {
			Job job = (Job) dao.read(Job.class, joblet.getJobId());
			Criteria failures = queryDAO.createCriteria(Joblet.class);
			failures.add(Restrictions.eq("jobId", job.getId()));
			failures.add(Restrictions.eq("status", JOB_STATUS.FAILED));
			failures.setProjection(Projections.rowCount());
			int failureCount = ((Integer) failures.list().get(0)).intValue();
			int jobStatus = (failureCount == 0) ? JOB_STATUS.COMPLETED
					: JOB_STATUS.FAILED;
			job.setStatus(jobStatus);
			job = (Job) dao.update(job);
			if ((job.getCallbackType() != 0)
					&& (job.getCallbackType() != JOB_CALLBACK_TYPES.NONE)) {
				Map<String, String> params = new HashMap<String, String>();
				params.put("jobId", Integer.toString(job.getId()));
				params.put("jobStatus", jobStatusTypes[jobStatus]);
				params.put("callbackType", ApiCallbackTypes
						.getStringCallbackType(job.getCallbackType()));
				params.put("callbackAddress", job.getCallbackAddress());
				Joblet callback = new Joblet(0, System.currentTimeMillis(), 0,
						0, job.getSubmitter(), 2, Constants.CALLBACK_JOBLET,
						"Callback for job # ", params, null,
						JOB_STATUS.RECEIVED);
				try {
					self.submitJoblet(callback, 0, JOB_CALLBACK_TYPES.NONE,
							null, null);
				} catch (InvalidJobId e) {
					log.error("InvalidJobId called while submitting callback!",
							e);
				}
			}
		}
	}
 | 
		public void completeJoblet(int jobletId, JobletResult result,
			String logMessage) throws TransportException, InvalidApiKey,
			InvalidJobletId {
		log.trace("completeJoblet()");
		Joblet joblet = readJoblet(jobletId);
		joblet.setStatus(result.getStatus());
		dao.update(joblet);
		result.setJoblet(joblet);
		result.setTimeCreated(System.currentTimeMillis());
		dao.create(result);
		if ((logMessage != null) && (logMessage.length() > 0)) {
			JobletLogEntry log = new JobletLogEntry(0, joblet, logMessage);
			dao.create(log);
		}
		Criteria crit = queryDAO.createCriteria(Joblet.class);
		crit.add(Restrictions.eq("jobId", joblet.getJobId()));
		crit.add(Restrictions.or(
				Restrictions.eq("status", JOB_STATUS.RECEIVED), Restrictions
						.or(Restrictions.eq("status", JOB_STATUS.QUEUED),
								Restrictions
										.eq("status", JOB_STATUS.PROCESSING))));
		crit.setProjection(Projections.rowCount());
		int active = ((Integer) crit.list().get(0)).intValue();
		if (active == 0) {
			Query query = queryDAO
					.createQuery("update Joblet set status = ? where (jobId = ? and status = ?)");
			query.setInteger(0, JOB_STATUS.RECEIVED);
			query.setInteger(1, joblet.getJobId());
			query.setInteger(2, JOB_STATUS.SAVED);
			active = query.executeUpdate();
		}
		if (active == 0) {
			Job job = (Job) dao.read(Job.class, joblet.getJobId());
			Criteria failures = queryDAO.createCriteria(Joblet.class);
			failures.add(Restrictions.eq("jobId", job.getId()));
			failures.add(Restrictions.eq("status", JOB_STATUS.FAILED));
			failures.setProjection(Projections.rowCount());
			int failureCount = ((Integer) failures.list().get(0)).intValue();
			int jobStatus = (failureCount == 0) ? JOB_STATUS.COMPLETED
					: JOB_STATUS.FAILED;
			job.setStatus(jobStatus);
			job = (Job) dao.update(job);
			if ((job.getCallbackType() != 0)
					&& (job.getCallbackType() != JOB_CALLBACK_TYPES.NONE)) {
				Map<String, String> params = new HashMap<String, String>();
				params.put("jobId", Integer.toString(job.getId()));
				params.put("jobStatus", jobStatusTypes[jobStatus]);
				params.put("callbackType", ApiCallbackTypes
						.getStringCallbackType(job.getCallbackType()));
				params.put("callbackAddress", job.getCallbackAddress());
				Joblet callback = new Joblet(0, System.currentTimeMillis(), 0,
						0, job.getSubmitter(), 2, Constants.CALLBACK_JOBLET,
						"Callback for job # ", params, job.getCallbackContent(),
						JOB_STATUS.RECEIVED);
				try {
					self.submitJoblet(callback, 0, JOB_CALLBACK_TYPES.NONE,
							null, null);
				} catch (InvalidJobId e) {
					log.error("InvalidJobId called while submitting callback!",
							e);
				}
			}
		}
	}
 | 
| 
	  public void shouldGetListOfUserSupportedProgramsForAFacilityForGivenRights() {
    Program program = new Program();
    List<Program> programs = new ArrayList<>(Arrays.asList(program));
    Long facilityId = 12345L;
    when(programService.getProgramsSupportedByUserHomeFacilityWithRights(facilityId, USER_ID, VIEW_REQUISITION)).thenReturn(programs);
    assertEquals(programs, controller.getProgramsToViewRequisitions(facilityId, httpServletRequest));
  }
 | 
	  public void shouldGetListOfUserSupportedProgramsForAFacilityForGivenRights() {
    Program program = new Program();
    List<Program> programs = new ArrayList<>(Arrays.asList(program));
    Long facilityId = 12345L;
    when(programService.getProgramsForUserByFacilityAndRights(facilityId, USER_ID, VIEW_REQUISITION)).thenReturn(programs);
    assertEquals(programs, controller.getProgramsToViewRequisitions(facilityId, httpServletRequest));
  }
 | 
| 
	    private void _startScan( File folder ){
        File[] files = folder.listFiles( new FileFilter() {
            @Override
            public boolean accept(File pathname) {
                if ( ! pathname.canRead() ) return false;
                if ( pathname.isHidden() && ! _hidden ) return false;
                if ( pathname.isDirectory() && ! _recursive ) return false;
                if ( _ff != null ){
                	return _ff.accept( pathname );
                } else {
                	for ( String ext : ALLOWED_MEDIA ) 
                		if ( pathname.getName().endsWith( ext ) ) 
                			return true;
                }
                return false;
            }
        });
        for ( File file : files ){
            if ( this.isStopped() ) return;
            if ( file.isDirectory() ){
                this._startScan( file );
                continue;
            }
            this.files.add( file );
            this.getThreadListener().onProgress(this, 0, 0, 0, file);
        }
    }
 | 
	    private void _startScan( File folder ){
        File[] files = folder.listFiles( new FileFilter() {
            @Override
            public boolean accept(File pathname) {
                if ( ! pathname.canRead() ) return false;
                if ( pathname.isHidden() && ! _hidden ) return false;
                if ( pathname.isDirectory() && ! _recursive ) return false;
                if ( _ff != null ){
                	return _ff.accept( pathname );
                } else {
                	for ( String ext : ALLOWED_MEDIA ) 
                		if ( pathname.getName().endsWith( "." + ext ) ) 
                			return true;
                }
                return false;
            }
        });
        for ( File file : files ){
            if ( this.isStopped() ) return;
            if ( file.isDirectory() ){
                this._startScan( file );
                continue;
            }
            this.files.add( file );
            this.getThreadListener().onProgress(this, 0, 0, 0, file);
        }
    }
 | 
| 
	    private boolean getLockInformation(ITransaction transaction,
            HttpServletRequest req, HttpServletResponse resp)
            throws ServletException, IOException {
        Node lockInfoNode = null;
        DocumentBuilder documentBuilder = null;
        documentBuilder = getDocumentBuilder();
        try {
            Document document = documentBuilder.parse(new InputSource(req
                    .getInputStream()));
            Element rootElement = document.getDocumentElement();
            lockInfoNode = rootElement;
            if (lockInfoNode != null) {
                NodeList childList = lockInfoNode.getChildNodes();
                Node lockScopeNode = null;
                Node lockTypeNode = null;
                Node lockOwnerNode = null;
                Node currentNode = null;
                String nodeName = null;
                for (int i = 0; i < childList.getLength(); i++) {
                    currentNode = childList.item(i);
                    if (currentNode.getNodeType() == Node.ELEMENT_NODE
                            || currentNode.getNodeType() == Node.TEXT_NODE) {
                        nodeName = currentNode.getNodeName();
                        if (nodeName.endsWith("locktype")) {
                            lockTypeNode = currentNode;
                        }
                        if (nodeName.endsWith("lockscope")) {
                            lockScopeNode = currentNode;
                        }
                        if (nodeName.endsWith("owner")) {
                            lockOwnerNode = currentNode;
                        }
                    } else {
                        return false;
                    }
                }
                if (lockScopeNode != null) {
                    String scope = null;
                    childList = lockScopeNode.getChildNodes();
                    for (int i = 0; i < childList.getLength(); i++) {
                        currentNode = childList.item(i);
                        if (currentNode.getNodeType() == Node.ELEMENT_NODE) {
                            scope = currentNode.getNodeName();
                            if (scope.endsWith("exclusive")) {
                                _exclusive = true;
                            } else if (scope.equals("shared")) {
                                _exclusive = false;
                            }
                        }
                    }
                    if (scope == null) {
                        return false;
                    }
                } else {
                    return false;
                }
                if (lockTypeNode != null) {
                    childList = lockTypeNode.getChildNodes();
                    for (int i = 0; i < childList.getLength(); i++) {
                        currentNode = childList.item(i);
                        if (currentNode.getNodeType() == Node.ELEMENT_NODE) {
                            _type = currentNode.getNodeName();
                            if (_type.endsWith("write")) {
                                _type = "write";
                            } else if (_type.equals("read")) {
                                _type = "read";
                            }
                        }
                    }
                    if (_type == null) {
                        return false;
                    }
                } else {
                    return false;
                }
                if (lockOwnerNode != null) {
                    childList = lockOwnerNode.getChildNodes();
                    for (int i = 0; i < childList.getLength(); i++) {
                        currentNode = childList.item(i);
                        if (currentNode.getNodeType() == Node.ELEMENT_NODE) {
                            _lockOwner = currentNode.getNodeValue();
                        }
                    }
                }
                if (_lockOwner == null) {
                    return false;
                }
            } else {
                return false;
            }
        } catch (DOMException e) {
            resp.sendError(WebdavStatus.SC_INTERNAL_SERVER_ERROR);
            e.printStackTrace();
            return false;
        } catch (SAXException e) {
            resp.sendError(WebdavStatus.SC_INTERNAL_SERVER_ERROR);
            e.printStackTrace();
            return false;
        }
        return true;
    }
 | 
	    private boolean getLockInformation(ITransaction transaction,
            HttpServletRequest req, HttpServletResponse resp)
            throws ServletException, IOException {
        Node lockInfoNode = null;
        DocumentBuilder documentBuilder = null;
        documentBuilder = getDocumentBuilder();
        try {
            Document document = documentBuilder.parse(new InputSource(req
                    .getInputStream()));
            Element rootElement = document.getDocumentElement();
            lockInfoNode = rootElement;
            if (lockInfoNode != null) {
                NodeList childList = lockInfoNode.getChildNodes();
                Node lockScopeNode = null;
                Node lockTypeNode = null;
                Node lockOwnerNode = null;
                Node currentNode = null;
                String nodeName = null;
                for (int i = 0; i < childList.getLength(); i++) {
                    currentNode = childList.item(i);
                    if (currentNode.getNodeType() == Node.ELEMENT_NODE
                            || currentNode.getNodeType() == Node.TEXT_NODE) {
                        nodeName = currentNode.getNodeName();
                        if (nodeName.endsWith("locktype")) {
                            lockTypeNode = currentNode;
                        }
                        if (nodeName.endsWith("lockscope")) {
                            lockScopeNode = currentNode;
                        }
                        if (nodeName.endsWith("owner")) {
                            lockOwnerNode = currentNode;
                        }
                    } else {
                        return false;
                    }
                }
                if (lockScopeNode != null) {
                    String scope = null;
                    childList = lockScopeNode.getChildNodes();
                    for (int i = 0; i < childList.getLength(); i++) {
                        currentNode = childList.item(i);
                        if (currentNode.getNodeType() == Node.ELEMENT_NODE) {
                            scope = currentNode.getNodeName();
                            if (scope.endsWith("exclusive")) {
                                _exclusive = true;
                            } else if (scope.equals("shared")) {
                                _exclusive = false;
                            }
                        }
                    }
                    if (scope == null) {
                        return false;
                    }
                } else {
                    return false;
                }
                if (lockTypeNode != null) {
                    childList = lockTypeNode.getChildNodes();
                    for (int i = 0; i < childList.getLength(); i++) {
                        currentNode = childList.item(i);
                        if (currentNode.getNodeType() == Node.ELEMENT_NODE) {
                            _type = currentNode.getNodeName();
                            if (_type.endsWith("write")) {
                                _type = "write";
                            } else if (_type.equals("read")) {
                                _type = "read";
                            }
                        }
                    }
                    if (_type == null) {
                        return false;
                    }
                } else {
                    return false;
                }
                if (lockOwnerNode != null) {
                    childList = lockOwnerNode.getChildNodes();
                    for (int i = 0; i < childList.getLength(); i++) {
                        currentNode = childList.item(i);
                        if (currentNode.getNodeType() == Node.ELEMENT_NODE) {
							_lockOwner = currentNode.getFirstChild()
									.getNodeValue();
                        }
                    }
                }
                if (_lockOwner == null) {
                    return false;
                }
            } else {
                return false;
            }
        } catch (DOMException e) {
            resp.sendError(WebdavStatus.SC_INTERNAL_SERVER_ERROR);
            e.printStackTrace();
            return false;
        } catch (SAXException e) {
            resp.sendError(WebdavStatus.SC_INTERNAL_SERVER_ERROR);
            e.printStackTrace();
            return false;
        }
        return true;
    }
 | 
| 
	    public static double[] getUniquedValuesFromMatrix(IMatrix data, IElementAdapter cellAdapter, int valueDimension, int maxUnique, IProgressMonitor monitor) {
        Double[] values = null;
        List<Double> valueList = new ArrayList<Double>();
        MatrixUtils.DoubleCast cast = MatrixUtils.createDoubleCast(
                cellAdapter.getProperty(valueDimension).getValueClass());
        Double min = Double.POSITIVE_INFINITY;
        Double max = Double.NEGATIVE_INFINITY;
        int colNb = data.getColumnCount();
        int rowNb = data.getRowCount();
        IProgressMonitor submonitor = monitor.subtask();
        String valueDimensionName = data.getCellAttributes().get(valueDimension).getName();
        submonitor.begin("Reading all values in data matrix for "+ valueDimensionName, rowNb);
        int randomRows = 50 > rowNb ? rowNb : 50;
        int[] randomRowsIdx = new int[randomRows];
        for (int i = 0; i < randomRows; i++)
            randomRowsIdx[i] = (int)(Math.random() * ((rowNb) + 1));
        int rr = 0;
        for (int r = 0; r<rowNb; r++) {
            monitor.worked(1);
            for (int c = 0; c < colNb; c++) {
                double d = cast.getDoubleValue(
                        data.getCellValue(r, c, valueDimension));
                if (!Double.isNaN(d)) {
                    if (valueList.size() <= maxUnique && !valueList.contains(d) )
                        valueList.add(d);
                    min = d < min ? d : min;
                    max = d > max ? d : max;
                }
            }
            if (rr >= randomRows-1)
                break;
            else if (valueList.size() >= maxUnique) {
                r = randomRowsIdx[rr];
                rr++;                
            }
        }
        if (!valueList.contains(min))
            valueList.add(min);
        if (!valueList.contains(max))
            valueList.add(max);
        if (valueList.size() >= maxUnique) {
            valueList.clear();
            double spectrum = max-min;
            double step = spectrum/maxUnique;
            for (int i = 0; i < maxUnique; i++) {
                valueList.add(i*step-(spectrum - max));
            }
        }
        return ArrayUtils.toPrimitive(valueList.toArray(new Double[]{}));
    }
 | 
	    public static double[] getUniquedValuesFromMatrix(IMatrix data, IElementAdapter cellAdapter, int valueDimension, int maxUnique, IProgressMonitor monitor) {
        Double[] values = null;
        List<Double> valueList = new ArrayList<Double>();
        MatrixUtils.DoubleCast cast = MatrixUtils.createDoubleCast(
                cellAdapter.getProperty(valueDimension).getValueClass());
        Double min = Double.POSITIVE_INFINITY;
        Double max = Double.NEGATIVE_INFINITY;
        int colNb = data.getColumnCount();
        int rowNb = data.getRowCount();
        IProgressMonitor submonitor = monitor.subtask();
        String valueDimensionName = data.getCellAttributes().get(valueDimension).getName();
        submonitor.begin("Reading all values in data matrix for "+ valueDimensionName, rowNb);
        int randomRows = 50 > rowNb ? rowNb : 50;
        int[] randomRowsIdx = new int[randomRows];
        for (int i = 0; i < randomRows; i++)
            randomRowsIdx[i] = (int)(Math.random() * ((rowNb) + 1));
        int rr = 0;
        for (int r = 0; r<rowNb; r++) {
            monitor.worked(1);
            for (int c = 0; c < colNb; c++) {
                Object v = data.getCellValue(r, c, valueDimension);
                if (v == null)
                    continue;
                double d = cast.getDoubleValue(v);
                if (!Double.isNaN(d)) {
                    if (valueList.size() <= maxUnique && !valueList.contains(d) )
                        valueList.add(d);
                    min = d < min ? d : min;
                    max = d > max ? d : max;
                }
            }
            if (rr >= randomRows-1)
                break;
            else if (valueList.size() >= maxUnique) {
                r = randomRowsIdx[rr];
                rr++;                
            }
        }
        if (!valueList.contains(min))
            valueList.add(min);
        if (!valueList.contains(max))
            valueList.add(max);
        if (valueList.size() >= maxUnique) {
            valueList.clear();
            double spectrum = max-min;
            double step = spectrum/maxUnique;
            for (int i = 0; i < maxUnique; i++) {
                valueList.add(i*step-(spectrum - max));
            }
        }
        return ArrayUtils.toPrimitive(valueList.toArray(new Double[]{}));
    }
 | 
| 
	    void startCleanup() {
        final long now = System.currentTimeMillis();
        if (locallyOwnedMap != null) {
            locallyOwnedMap.evict(now);
        }
        if (mapNearCache != null) {
            mapNearCache.evict(now, false);
        }
        final Set<Record> recordsDirty = new HashSet<Record>();
        final Set<Record> recordsUnknown = new HashSet<Record>();
        final Set<Record> recordsToPurge = new HashSet<Record>();
        final Set<Record> recordsToEvict = new HashSet<Record>();
        final Set<Record> sortedRecords = new TreeSet<Record>(evictionComparator);
        final Collection<Record> records = mapRecords.values();
        final int clusterMemberSize = node.getClusterImpl().getMembers().size();
        final int memberCount = (clusterMemberSize == 0) ? 1 : clusterMemberSize;
        final int maxSizePerJVM = maxSize / memberCount;
        final boolean evictionAware = evictionComparator != null && maxSizePerJVM > 0;
        final PartitionServiceImpl partitionService = concurrentMapManager.partitionManager.partitionServiceImpl;
        int recordsStillOwned = 0;
        int backupPurgeCount = 0;
        for (Record record : records) {
            PartitionServiceImpl.PartitionProxy partition = partitionService.getPartition(record.getBlockId());
            Member owner = partition.getOwner();
            if (owner != null && !partition.isMigrating()) {
                boolean owned = owner.localMember();
                if (owned) {
                    if (store != null && record.isDirty()) {
                        if (now > record.getWriteTime()) {
                            recordsDirty.add(record);
                            record.setDirty(false);
                        }
                    } else if (shouldPurgeRecord(record, now)) {
                        recordsToPurge.add(record);  
                    } else if (record.isActive() && !record.isValid(now)) {
                        recordsToEvict.add(record);  
                    } else if (evictionAware && record.isActive() && record.isEvictable()) {
                        sortedRecords.add(record);   
                        recordsStillOwned++;
                    } else {
                        recordsStillOwned++;
                    }
                } else {
                    Member ownerEventual = partition.getEventualOwner();
                    boolean backup = false;
                    if (ownerEventual != null && owner != null && !owner.localMember()) {
                        int distance = node.getClusterImpl().getDistanceFrom(ownerEventual);
                        backup = (distance != -1 && distance <= getBackupCount());
                    }
                    if (backup) {
                        if (shouldPurgeRecord(record, now)) {
                            recordsToPurge.add(record);
                            backupPurgeCount++;
                        }
                    } else {
                        recordsUnknown.add(record);
                    }
                }
            }
        }
        if (evictionAware && maxSizePerJVM < recordsStillOwned) {
            int numberOfRecordsToEvict = (int) (recordsStillOwned * evictionRate);
            int evictedCount = 0;
            for (Record record : sortedRecords) {
                if (record.isActive() && record.isEvictable()) {
                    recordsToEvict.add(record);
                    if (++evictedCount >= numberOfRecordsToEvict) {
                        break;
                    }
                }
            }
        }
        Level levelLog = (concurrentMapManager.LOG_STATE) ? Level.INFO : Level.FINEST;
        logger.log(levelLog, name + " Cleanup "
                + ", dirty:" + recordsDirty.size()
                + ", purge:" + recordsToPurge.size()
                + ", evict:" + recordsToEvict.size()
                + ", unknown:" + recordsUnknown.size()
                + ", stillOwned:" + recordsStillOwned
                + ", backupPurge:" + backupPurgeCount
        );
        executeStoreUpdate(recordsDirty);
        executeEviction(recordsToEvict);
        executePurge(recordsToPurge);
        executePurgeUnknowns(recordsUnknown);
    }
 | 
	    void startCleanup() {
        final long now = System.currentTimeMillis();
        if (locallyOwnedMap != null) {
            locallyOwnedMap.evict(now);
        }
        if (mapNearCache != null) {
            mapNearCache.evict(now, false);
        }
        final Set<Record> recordsDirty = new HashSet<Record>();
        final Set<Record> recordsUnknown = new HashSet<Record>();
        final Set<Record> recordsToPurge = new HashSet<Record>();
        final Set<Record> recordsToEvict = new HashSet<Record>();
        final Set<Record> sortedRecords = new TreeSet<Record>(evictionComparator);
        final Collection<Record> records = mapRecords.values();
        final int clusterMemberSize = node.getClusterImpl().getMembers().size();
        final int memberCount = (clusterMemberSize == 0) ? 1 : clusterMemberSize;
        final int maxSizePerJVM = maxSize / memberCount;
        final boolean evictionAware = evictionComparator != null && maxSizePerJVM > 0;
        final PartitionServiceImpl partitionService = concurrentMapManager.partitionManager.partitionServiceImpl;
        int recordsStillOwned = 0;
        int backupPurgeCount = 0;
        for (Record record : records) {
            PartitionServiceImpl.PartitionProxy partition = partitionService.getPartition(record.getBlockId());
            Member owner = partition.getOwner();
            if (owner != null && !partition.isMigrating()) {
                boolean owned = owner.localMember();
                if (owned) {
                    if (store != null && writeDelayMillis > 0 && record.isDirty()) {
                        if (now > record.getWriteTime()) {
                            recordsDirty.add(record);
                            record.setDirty(false);
                        }
                    } else if (shouldPurgeRecord(record, now)) {
                        recordsToPurge.add(record);  
                    } else if (record.isActive() && !record.isValid(now)) {
                        recordsToEvict.add(record);  
                    } else if (evictionAware && record.isActive() && record.isEvictable()) {
                        sortedRecords.add(record);   
                        recordsStillOwned++;
                    } else {
                        recordsStillOwned++;
                    }
                } else {
                    Member ownerEventual = partition.getEventualOwner();
                    boolean backup = false;
                    if (ownerEventual != null && owner != null && !owner.localMember()) {
                        int distance = node.getClusterImpl().getDistanceFrom(ownerEventual);
                        backup = (distance != -1 && distance <= getBackupCount());
                    }
                    if (backup) {
                        if (shouldPurgeRecord(record, now)) {
                            recordsToPurge.add(record);
                            backupPurgeCount++;
                        }
                    } else {
                        recordsUnknown.add(record);
                    }
                }
            }
        }
        if (evictionAware && maxSizePerJVM < recordsStillOwned) {
            int numberOfRecordsToEvict = (int) (recordsStillOwned * evictionRate);
            int evictedCount = 0;
            for (Record record : sortedRecords) {
                if (record.isActive() && record.isEvictable()) {
                    recordsToEvict.add(record);
                    if (++evictedCount >= numberOfRecordsToEvict) {
                        break;
                    }
                }
            }
        }
        Level levelLog = (concurrentMapManager.LOG_STATE) ? Level.INFO : Level.FINEST;
        logger.log(levelLog, name + " Cleanup "
                + ", dirty:" + recordsDirty.size()
                + ", purge:" + recordsToPurge.size()
                + ", evict:" + recordsToEvict.size()
                + ", unknown:" + recordsUnknown.size()
                + ", stillOwned:" + recordsStillOwned
                + ", backupPurge:" + backupPurgeCount
        );
        executeStoreUpdate(recordsDirty);
        executeEviction(recordsToEvict);
        executePurge(recordsToPurge);
        executePurgeUnknowns(recordsUnknown);
    }
 | 
| 
	    protected void writeRatings(RatingDataAccessObject dao, Long2IntMap userSegments) throws MojoExecutionException, SQLException {
        Connection[] dbcs = new Connection[numFolds];
        PreparedStatement[] insert = new PreparedStatement[numFolds];
        PreparedStatement[] test = new PreparedStatement[numFolds];
        try {
            for (int i = 0; i < numFolds; i++) {
                String fn = String.format(databaseFilePattern, i+1);
                getLog().debug("Opening database " + fn);
                dbcs[i] = DriverManager.getConnection("jdbc:sqlite:" + fn);
                JDBCUtils.execute(dbcs[i], "DROP TABLE IF EXISTS train;");
                JDBCUtils.execute(dbcs[i], "DROP TABLE IF EXISTS test;");
                String qmake = "CREATE TABLE %s (user INTEGER, item INTEGER, rating REAL";
                if (useTimestamp)
                    qmake += ", timestamp INTEGER";
                qmake += ");";
                JDBCUtils.execute(dbcs[i], String.format(qmake, "train"));
                JDBCUtils.execute(dbcs[i], String.format(qmake, "test"));
                qmake = "INSERT INTO %s (user, item, rating";
                if (useTimestamp) qmake += ", timestamp";
                qmake += ") VALUES (?, ?, ?";
                if (useTimestamp) qmake += ", ?";
                qmake += ");";
                insert[i] = dbcs[i].prepareStatement(String.format(qmake, "train"));
                test[i] = dbcs[i].prepareStatement(String.format(qmake, "test"));
                dbcs[i].setAutoCommit(false);
            }
            Long2ObjectMap<List<Rating>> userRatings = new Long2ObjectOpenHashMap<List<Rating>>(userSegments.size());
            LongIterator iter = userSegments.keySet().iterator();
            while (iter.hasNext())
                userRatings.put(iter.nextLong(), new ArrayList<Rating>());
            getLog().info("Processing ratings");
            Cursor<Rating> ratings = dao.getRatings();
            try {
                int n = 0;
                for (Rating r: ratings) {
                    long uid = r.getUserId();
                    int s = userSegments.get(uid);
                    userRatings.get(uid).add(r);
                    long ts = r.getTimestamp();
                    for (int i = 0; i < numFolds; i++) {
                        if (i != s) {
                            insert[i].setLong(1, uid);
                            insert[i].setLong(2, r.getItemId());
                            insert[i].setDouble(3, r.getRating());
                            if (useTimestamp) {
                                if (ts >= 0)
                                    insert[i].setLong(4, ts);
                                else
                                    insert[i].setNull(4, Types.INTEGER);
                            }
                            insert[i].executeUpdate();
                        }
                    }
                    n++;
                    if (n % 50 == 0 && getLog().isInfoEnabled())
                        System.out.format("%d\r", n);
                }
                if (getLog().isInfoEnabled())
                    System.out.format("%d\n", n);
            } finally {
                ratings.close();
            }
            getLog().info("Writing test sets");
            int n = 0;
            for (Long2ObjectMap.Entry<List<Rating>> e: userRatings.long2ObjectEntrySet()) {
                long uid = e.getLongKey();
                int seg = userSegments.get(uid);
                PreparedStatement sTrain = insert[seg];
                PreparedStatement sTest = test[seg];
                sTrain.setLong(1, uid);
                sTest.setLong(1, uid);
                List<Rating> urs = e.getValue();
                Collections.shuffle(urs);
                int midpt = urs.size() - holdoutCount;
                for (Rating r: urs.subList(0, midpt)) {
                    long iid = r.getItemId();
                    double v = r.getRating();
                    long ts = r.getTimestamp();
                    sTrain.setLong(2, iid);
                    sTrain.setDouble(3, v);
                    if (useTimestamp) {
                        if (ts >= 0)
                            sTrain.setLong(4, ts);
                        else
                            sTrain.setNull(4, Types.INTEGER);
                    }
                    sTrain.executeUpdate();
                }
                for (Rating r: urs.subList(0, midpt)) {
                    long iid = r.getItemId();
                    double v = r.getRating();
                    long ts = r.getTimestamp();
                    sTest.setLong(2, iid);
                    sTest.setDouble(3, v);
                    if (useTimestamp) {
                        if (ts >= 0)
                            sTest.setLong(4, ts);
                        else
                            sTest.setNull(4, Types.INTEGER);
                    }
                    sTest.executeUpdate();
                }
                urs.clear();
                n++;
                if (n % 50 == 0 && getLog().isInfoEnabled())
                    System.out.format("%d\r", n);
            }
            if (getLog().isInfoEnabled())
                System.out.format("%d\n", n);
            userRatings = null;
            getLog().info("Committing data");
            for (int i = 0; i < numFolds; i++) {
                getLog().debug(String.format("Committing and indexing set %d", i+1));
                dbcs[i].commit();
                dbcs[i].setAutoCommit(true);
                JDBCUtils.execute(dbcs[i], "CREATE INDEX train_user_idx ON train (user);");
                JDBCUtils.execute(dbcs[i], "CREATE INDEX train_item_idx ON train (item);");
                JDBCUtils.execute(dbcs[i], "CREATE INDEX train_timestamp_idx ON train (timestamp);");
                JDBCUtils.execute(dbcs[i], "CREATE INDEX test_user_idx ON test (user);");
                JDBCUtils.execute(dbcs[i], "CREATE INDEX test_item_idx ON test (item);");
                JDBCUtils.execute(dbcs[i], "ANALYZE;");
            }
        } finally {
            boolean failed = false;
            for (int i = 0; i < dbcs.length; i++) {
                if (test[i] != null) {
                    try {
                        test[i].close();
                    } catch (SQLException e) {
                        getLog().error(e);
                        failed = true;
                    }
                }
                if (insert[i] != null) {
                    try {
                        insert[i].close();
                    } catch (SQLException e) {
                        getLog().error(e);
                        failed = true;
                    }
                }
                if (dbcs[i] != null) {
                    try {
                        dbcs[i].close();
                    } catch (SQLException e) {
                        getLog().error(e);
                        failed = true;
                    }
                }
                if (failed)
                    throw new MojoExecutionException("Failed to close database");
            }
        }
    }
 | 
	    protected void writeRatings(RatingDataAccessObject dao, Long2IntMap userSegments) throws MojoExecutionException, SQLException {
        Connection[] dbcs = new Connection[numFolds];
        PreparedStatement[] insert = new PreparedStatement[numFolds];
        PreparedStatement[] test = new PreparedStatement[numFolds];
        try {
            for (int i = 0; i < numFolds; i++) {
                String fn = String.format(databaseFilePattern, i+1);
                getLog().debug("Opening database " + fn);
                dbcs[i] = DriverManager.getConnection("jdbc:sqlite:" + fn);
                JDBCUtils.execute(dbcs[i], "DROP TABLE IF EXISTS train;");
                JDBCUtils.execute(dbcs[i], "DROP TABLE IF EXISTS test;");
                String qmake = "CREATE TABLE %s (user INTEGER, item INTEGER, rating REAL";
                if (useTimestamp)
                    qmake += ", timestamp INTEGER";
                qmake += ");";
                JDBCUtils.execute(dbcs[i], String.format(qmake, "train"));
                JDBCUtils.execute(dbcs[i], String.format(qmake, "test"));
                qmake = "INSERT INTO %s (user, item, rating";
                if (useTimestamp) qmake += ", timestamp";
                qmake += ") VALUES (?, ?, ?";
                if (useTimestamp) qmake += ", ?";
                qmake += ");";
                insert[i] = dbcs[i].prepareStatement(String.format(qmake, "train"));
                test[i] = dbcs[i].prepareStatement(String.format(qmake, "test"));
                dbcs[i].setAutoCommit(false);
            }
            Long2ObjectMap<List<Rating>> userRatings = new Long2ObjectOpenHashMap<List<Rating>>(userSegments.size());
            LongIterator iter = userSegments.keySet().iterator();
            while (iter.hasNext())
                userRatings.put(iter.nextLong(), new ArrayList<Rating>());
            getLog().info("Processing ratings");
            Cursor<Rating> ratings = dao.getRatings();
            try {
                int n = 0;
                for (Rating r: ratings) {
                    long uid = r.getUserId();
                    int s = userSegments.get(uid);
                    userRatings.get(uid).add(r);
                    long ts = r.getTimestamp();
                    for (int i = 0; i < numFolds; i++) {
                        if (i != s) {
                            insert[i].setLong(1, uid);
                            insert[i].setLong(2, r.getItemId());
                            insert[i].setDouble(3, r.getRating());
                            if (useTimestamp) {
                                if (ts >= 0)
                                    insert[i].setLong(4, ts);
                                else
                                    insert[i].setNull(4, Types.INTEGER);
                            }
                            insert[i].executeUpdate();
                        }
                    }
                    n++;
                    if (n % 50 == 0 && getLog().isInfoEnabled())
                        System.out.format("%d\r", n);
                }
                if (getLog().isInfoEnabled())
                    System.out.format("%d\n", n);
            } finally {
                ratings.close();
            }
            getLog().info("Writing test sets");
            int n = 0;
            for (Long2ObjectMap.Entry<List<Rating>> e: userRatings.long2ObjectEntrySet()) {
                long uid = e.getLongKey();
                int seg = userSegments.get(uid);
                PreparedStatement sTrain = insert[seg];
                PreparedStatement sTest = test[seg];
                sTrain.setLong(1, uid);
                sTest.setLong(1, uid);
                List<Rating> urs = e.getValue();
                Collections.shuffle(urs);
                int midpt = urs.size() - holdoutCount;
                for (Rating r: urs.subList(0, midpt)) {
                    long iid = r.getItemId();
                    double v = r.getRating();
                    long ts = r.getTimestamp();
                    sTrain.setLong(2, iid);
                    sTrain.setDouble(3, v);
                    if (useTimestamp) {
                        if (ts >= 0)
                            sTrain.setLong(4, ts);
                        else
                            sTrain.setNull(4, Types.INTEGER);
                    }
                    sTrain.executeUpdate();
                }
                for (Rating r: urs.subList(midpt, urs.size())) {
                    long iid = r.getItemId();
                    double v = r.getRating();
                    long ts = r.getTimestamp();
                    sTest.setLong(2, iid);
                    sTest.setDouble(3, v);
                    if (useTimestamp) {
                        if (ts >= 0)
                            sTest.setLong(4, ts);
                        else
                            sTest.setNull(4, Types.INTEGER);
                    }
                    sTest.executeUpdate();
                }
                urs.clear();
                n++;
                if (n % 50 == 0 && getLog().isInfoEnabled())
                    System.out.format("%d\r", n);
            }
            if (getLog().isInfoEnabled())
                System.out.format("%d\n", n);
            userRatings = null;
            getLog().info("Committing data");
            for (int i = 0; i < numFolds; i++) {
                getLog().debug(String.format("Committing and indexing set %d", i+1));
                dbcs[i].commit();
                dbcs[i].setAutoCommit(true);
                JDBCUtils.execute(dbcs[i], "CREATE INDEX train_user_idx ON train (user);");
                JDBCUtils.execute(dbcs[i], "CREATE INDEX train_item_idx ON train (item);");
                JDBCUtils.execute(dbcs[i], "CREATE INDEX train_timestamp_idx ON train (timestamp);");
                JDBCUtils.execute(dbcs[i], "CREATE INDEX test_user_idx ON test (user);");
                JDBCUtils.execute(dbcs[i], "CREATE INDEX test_item_idx ON test (item);");
                JDBCUtils.execute(dbcs[i], "ANALYZE;");
            }
        } finally {
            boolean failed = false;
            for (int i = 0; i < dbcs.length; i++) {
                if (test[i] != null) {
                    try {
                        test[i].close();
                    } catch (SQLException e) {
                        getLog().error(e);
                        failed = true;
                    }
                }
                if (insert[i] != null) {
                    try {
                        insert[i].close();
                    } catch (SQLException e) {
                        getLog().error(e);
                        failed = true;
                    }
                }
                if (dbcs[i] != null) {
                    try {
                        dbcs[i].close();
                    } catch (SQLException e) {
                        getLog().error(e);
                        failed = true;
                    }
                }
                if (failed)
                    throw new MojoExecutionException("Failed to close database");
            }
        }
    }
 | 
Contains the processed fine-tuning datasets for RepairLLaMA.
To load the dataset, you must define which revision (i.e., which input/output representation pair) you want to load.
from datasets import load_dataset
# Load ir1xor1
dataset = load_dataset("ASSERT-KTH/repairllama-datasets", "ir1xor1")
# Load irXxorY
dataset = load_dataset("ASSERT-KTH/repairllama-datasets", "irXxorY")
If you use RepairLLaMA in academic research, please cite "RepairLLaMA: Efficient Representations and Fine-Tuned Adapters for Program Repair", Technical report, arXiv 2312.15698, 2023.
@techreport{repairllama2023,
  title={RepairLLaMA: Efficient Representations and Fine-Tuned Adapters for Program Repair},
  author={Silva, Andr{\'e} and Fang, Sen and Monperrus, Martin},
  url = {http://arxiv.org/abs/2312.15698},
  number = {2312.15698},
  institution = {arXiv},
}