Dataset Viewer
pair_id
stringlengths 23
25
| group_id
stringlengths 7
9
| set_name
stringclasses 1
value | seq1_id
stringlengths 15
17
| seq2_id
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| seq1
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374
| seq2
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339
| ref_alignment
listlengths 22
259
| percent_identity
float64 1.72
72.2
| scop_labels
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| meta
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187
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d19hca_:19hc_A1-19hc_A2
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d19hca_
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malidup
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d19hca_:19hc_A1
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d19hca_:19hc_A2
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AALEPTDSGAPSAIVMFPVGEKPNPKGAAMKPVVFNHLIHEKKIADCETCHHTGDPVSCSTCHTVEGKAEGDYITLDRAMHATDIAARAKGNTPTSCVSCHQSETKERRECAGCHAITTPKDDEAWCATCHDITP
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VAPVSPMLAPYKVVIDALADKYEPSDFTHRRHLTSLMESIKDDKLAQAFHDKPEILCATCHHRSPLSLTPPKCGSCHTKEIDAADPGRPNLMAAYHLECMGCHKGMAVARPRDTDCTTCHKAAA
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d1a4pa_:1a4p_A1-1a4p_A2
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PSQMEHAMETMMFTFHKFAGDKGYLTKEDLRVLMEKEFPGFLENQ
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d1a4sa_:1a4s_A1-1a4s_A2
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d1a4sa_:1a4s_A2
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GKSPLLIFKDCELENAVRGALMANFLTQGQVCTNGTRVFVQREIMPQFLEEVVKRTKAIVVGDPLLTETRMGGLISKPQLDKVLGFVAQAKKEGARVLCGGEPLTPSDPKLKNGYFMSPCVLDNCRDDMTCVKEEIFGPVMSVLPFDTEEEVLQRANNTTFGLASGVFTRDISRAHRVAANLEAGTCYINTYSISPV
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{"scop_id1": "d1a4sa_", "range1": ["A152-A265"], "scop_id2": "d1a4sa_", "range2": ["A266-A462"], "source_file": "1a4s.manual.ali"}
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d1a6da1:1a6d_A1-1a6d_A2
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d1a6da1
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malidup
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d1a6da1:1a6d_A1
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d1a6da1:1a6d_A2
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REQGKNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHPTAKMIVEVSKAQDTAVGDGTTTAVVLSGELLKQAETLLDQGV
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HPTVISNGYRLAVNEARKIIDEIAEKSFLWGGGAVEAELAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLKADDEKGRISVGVDLDNNGVGDMKAKGVVDPLRVKTHALESAVEVATMILRIDDVI
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d1a8l_1:1a8l_A1-1a8l_A2
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d1af2a1:1af2_A1-1af2_A2
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d1af2a1
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148,
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[
149,
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] | 16.483516 |
[
"class:Alpha and beta proteins (a/b)",
"fold:Cytidine deaminase-like",
"superfamily:Cytidine deaminase-like",
"family:Cytidine deaminase",
"protein:Two-domain cytidine deaminase"
] |
{"scop_id1": "d1af2a1", "range1": ["A1-A150"], "scop_id2": "d1af2a2", "range2": ["A151-A294"], "source_file": "1af2.manual.ali"}
|
d1afwb1:1afw_B1-1afw_B2
|
d1afwb1
|
malidup
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d1afwb1:1afw_B1
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d1afwb1:1afw_B2
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KNSLLEKRPEDVVIVAANRSAIGKGFKGAFKDVNTDYLLYNFLNEFIGRFPEPLRADLNLIEEVACGNVLNVGAGATEHRAACLASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALGVESMTNNYKNVNPLGMISSEELQKNREAKKCLIPMGITNENVAANFKISRKDQDEFAANSYQKAYKAKNEGLFEDEILPIKLPDGSICQSDEGPRPNVTAESLSSIRPAFIKDRGTTTAGNASQVSDGVAGVLLARRSVANQLN
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LPVLGRYIDFQTVGVPPEIMGVGPAYAIPKVLEATGLQVQDIDIFEINEAFAAQALYCIHKLGIDLNKVNPRGGAIALGHPLGCTGARQVATILRELKKDQIGVVSMCIGTGMGAAAIFIKE
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[
"class:Alpha and beta proteins (a/b)",
"fold:Thiolase-like",
"superfamily:Thiolase-like",
"family:Thiolase-related",
"protein:Thiolase"
] |
{"scop_id1": "d1afwb1", "range1": ["B25-B295"], "scop_id2": "d1afwb2", "range2": ["B296-B417"], "source_file": "1afw.manual.ali"}
|
d1ahja_:1ahj_A1-1ahj_A2
|
d1ahja_
|
malidup
|
d1ahja_:1ahj_A1
|
d1ahja_:1ahj_A2
|
ENAAPAQAAVSDRAWALFRALDGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAWTDPEFRQLLLTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVIVCSLCSCTAWP
|
ILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIASDIEIRVYDTTAETRYMVLPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQVPTV
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"fold:Nitrile hydratase alpha chain",
"superfamily:Nitrile hydratase alpha chain",
"family:Nitrile hydratase alpha chain",
"protein:Iron-containing nitrile hydratase"
] |
{"scop_id1": "d1ahja_", "range1": ["A10-A119"], "scop_id2": "d1ahja_", "range2": ["A120-A207"], "source_file": "1ahj.manual.ali"}
|
d1ahua1:1ahu_A1-1ahu_A2
|
d1ahua1
|
malidup
|
d1ahua1:1ahu_A1
|
d1ahua1:1ahu_A2
|
RGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILLDAAVLGDKRSYSSRTEPLSDEELDKIAKQLNLGRWNFYGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRVRDKTMQGIPTYDELKWIDWLPN
|
GAHLFFSPIAKVSGEDAMMQYAVTKKRCQEAGLDFIGTFTVGMREMHHIVCIVFNKKDLIQKRKVQWLMRTLIDDCAANGWGEYRTHLAFMDQIMETYNWNNSSFLRFNEVLKNAVDPNGIIAPGKSGVWPSQYSHVTWKL
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[
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"fold:Ferredoxin-like",
"superfamily:FAD-linked oxidases, C-terminal domain",
"family:Vanillyl-alcohol oxidase-like",
"protein:Vanillyl-alcohol oxidase"
] |
{"scop_id1": "d1ahua1", "range1": ["A274-A419"], "scop_id2": "d1ahua1", "range2": ["A420-A560"], "source_file": "1ahu_1.manual.ali"}
|
d1ai3__:1ai3_A1-1ai3_A2
|
d1ai3__
|
malidup
|
d1ai3__:1ai3_A1
|
d1ai3__:1ai3_A2
|
SKVVVPAQGKKITLQNGKLNVPENPIIPYIEGDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAETLDLIREYRVAIKGPLTTPVGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVKHPELTDMVIFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKRLVRAAIEYAIAN
|
DRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALFEATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAINAKTVTYDFERLMDGAKLLKCSEFGDAIIENM
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213,
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214,
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215,
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] | 7.070707 |
[
"class:Alpha and beta proteins (a/b)",
"fold:Isocitrate/Isopropylmalate dehydrogenase-like",
"superfamily:Isocitrate/Isopropylmalate dehydrogenase-like",
"family:Dimeric isocitrate & isopropylmalate dehydrogenases",
"protein:Isocitrate dehydrogenase, ICDH"
] |
{"scop_id1": "d1ai3__", "range1": ["A3-A220"], "scop_id2": "d1ai3__", "range2": ["A221-A416"], "source_file": "1ai3.manual.ali"}
|
d1aj8a_:1aj8_A1-1aj8_A2
|
d1aj8a_
|
malidup
|
d1aj8a_:1aj8_A1
|
d1aj8a_:1aj8_A2
|
LAKGLEDVYIDQTNICYIDGKEGKLYYRGYSVEELAELSTFEEVVYLLWWGKLPSLSELENFKKELAKSRGLPKEVIEIMEALPKNTHPMGALRTIISYLGNIDDSGDIPVTPEEVYRIGISVTAKIPTIVANWYRIKNGLEYV
|
PPKEKLSHAANFLYMLHGEEPPKEWEKAMDVALILYAEHEINASTLAVMTVGSTLSDYYSAILAGIGALKGPIHGGAVEEAIKQFMEIGSPEKVEEWFFKALQQKRKIMGAGHRVYKTYDPRARIFKKYASKLGDKKLFEIAERLERLVEEYLSKKGISINVDYWSGLVFYGMKIPIELYTTIFAMGRIAGWTAHLAEYVSHNRIIRPRLQYVGEIGKKYLPIELRR
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138,
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139,
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] | 10.11236 |
[
"class:All alpha proteins",
"fold:Citrate synthase",
"superfamily:Citrate synthase",
"family:Citrate synthase",
"protein:Citrate synthase"
] |
{"scop_id1": "d1aj8a_", "range1": ["A6-A149"], "scop_id2": "d1aj8a_", "range2": ["A150-A376"], "source_file": "1aj8.manual.ali"}
|
d1ako__:1ako_A1-1ako_A2
|
d1ako__
|
malidup
|
d1ako__:1ako_A1
|
d1ako__:1ako_A2
|
MKFVSFNINGLRARPHQLEAIVEKHQPDVIGLQETKVHDDMFPLEEVAKLGYNVFYHGQKGHYGVALLTKETPIAVRRGFPGDDEEAQRRIIMAEIPSLLGN
|
VTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMDRLMSWGLVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAECCVETGIDYEIRSMEKPSDHAPVWATFRR
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d1ala___2:1ala_A2-1ala_A3
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d1ala___2
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malidup
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d1ala___2:1ala_A2
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d1ala___2:1ala_A3
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ARIFDAHALKHAIKGAGTNEKVLTEILASRTPAEVQNIKQVYMQEYEANLEDKITGETSGHFQRLLVVLLQANR
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d1ala___3:1ala_A3-1ala_A4
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d1ala___3
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d1ala___3:1ala_A3
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d1ala___3:1ala_A4
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NRDPDGRVEEALVEKDAQVLFRAGELKWGTDEETFITILGTRSVSHLRRVFDKYMTISGFQIEETIDRETSGDLEKLLLAVVKCIR
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{"scop_id1": "d1ala__", "range1": ["160-245"], "scop_id2": "d1ala__", "range2": ["246-318"], "source_file": "1ala_A3A4.manual.ali"}
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d1ala___4:1ala_A1-1ala_A4
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d1ala___4
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malidup
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d1ala___4:1ala_A1
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d1ala___4:1ala_A4
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KYTRGTVTAFSPFDARADAEALRKAMKGMGTDEETILKILTSRNNAQRQEIASAFKTLFGRDLVDDLKSELTGKFETLMVSLMRP
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SVPAYFAETLYYSMKGAGTDDDTLIRVMVSRSEIDLLDIRHEFRKNFAKSLYQMIQKDTSGDYRKALLLLCGG
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{"scop_id1": "d1ala__", "range1": ["3-87"], "scop_id2": "d1ala__", "range2": ["246-318"], "source_file": "1ala_A1A4.manual.ali"}
|
d1anv_2:1anv_A1-1anv_A2
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d1anv_2
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malidup
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d1anv_2:1anv_A1
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d1anv_2:1anv_A2
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TGCALWLHRCAEIEGELKCLHGSIMINKEHVIENVVQISNTDARCCVHDAACPANQFSGKSCGMFFSEGAKAQVAFKQIKAFMQALYPNAQT
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d1aoa_1:1aoa_A1-1aoa_A2
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d1aoa_1
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d1aoa_1:1aoa_A1
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d1aoa_1:1aoa_A2
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d1b77a1:1b77_A1-1b77_A2
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d1bj5_1_3:1bj5_A1-1bj5_A3
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d1bj5_1_3
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d1bmlc1:1bml_C1-1bml_C2
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d1bmlc1
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malidup
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d1bmlc1:1bml_C1
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d1bmlc1:1bml_C2
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SVNNSQLVVSVAGTVEGTNQDISLKFFEIDLTSRPHKLEKADLLKAIQEQLIANVHSNDDYFEVIDFASDATITDRNGKVYFADKDGSVTLPTQPVQEFLLSGHVRVRPYKE
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{"scop_id1": "d1bmlc1", "range1": ["C12-C148"], "scop_id2": "d1bmlc2", "range2": ["C149-C284"], "source_file": "1bml_C1C2.manual.ali"}
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d1boy_1:1boy_A1-1boy_A2
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d1boy_1
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malidup
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d1boy_1:1boy_A1
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d1boy_1:1boy_A2
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{"scop_id1": "d1boy_1", "range1": ["A5-A106"], "scop_id2": "d1boy_2", "range2": ["A107-A213"], "source_file": "1boy.manual.ali"}
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d1bp1_1:1bp1_A1-1bp1_A2
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d1bp1_1
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malidup
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d1bp1_1:1bp1_A1
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d1bp1_1:1bp1_A2
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228,
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[
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{"scop_id1": "d1bp1_1", "range1": ["A1-A240"], "scop_id2": "d1bp1_2", "range2": ["A241-A456"], "source_file": "1bp1.manual.ali"}
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d1bwza1:1bwz_A1-1bwz_A2
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d1bwza1:1bwz_A1
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d1bwza1:1bwz_A2
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IQTVLCGAVSMGNPHCVVQVDDIQTANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGLLNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL
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{"scop_id1": "d1bwza1", "range1": ["A1-A144"], "scop_id2": "d1bwza2", "range2": ["A145-A274"], "source_file": "1bwz.manual.ali"}
|
d1bxra3:1bxr_A3-1bxr_A4
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d1bxra3
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d1bxra3:1bxr_A4
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STDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVPVIGTSPDAIDRAEDRE
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[
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{"scop_id1": "d1bxra3", "range1": ["A1-A127"], "scop_id2": "d1bxra4", "range2": ["A556-A676"], "source_file": "1bxr.manual.ali"}
|
d1bxra5:1bxr_A5-1bxr_A6
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d1bxra5
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malidup
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d1bxra5:1bxr_A5
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d1bxra5:1bxr_A6
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[
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"superfamily:Glutathione synthetase ATP-binding domain-like",
"family:BC ATP-binding domain-like",
"protein:Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains"
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{"scop_id1": "d1bxra5", "range1": ["A128-A402"], "scop_id2": "d1bxra6", "range2": ["A677-A935"], "source_file": "1bxr_A5A6.manual.ali"}
|
d1c3ga1:1c3g_A1-1c3g_A2
|
d1c3ga1
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d1c3ga1:1c3g_A1
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d1c3ga1:1c3g_A2
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ETVQVNLPVSLEDLFVGKKKSFKIGRKGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNF
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{"scop_id1": "d1c3ga1", "range1": ["A180-A261"], "scop_id2": "d1c3ga2", "range2": ["A266-A340"], "source_file": "1c3g.manual.ali"}
|
d1c3ma__1:1c3m_A1-1c3m_A2
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d1c3ma__1
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malidup
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d1c3ma__1:1c3m_A1
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d1c3ma__1:1c3m_A2
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ASDIAVQAGPWGGNGGKRWLQTAHGKFAGFFGNSGDVLDSIGGVVVP
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DNIEYHSGKFGVLGDKAETITFAEGGKITSIIIKGGTCIFSIQFVYKDK
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{"scop_id1": "d1c3ma_", "range1": ["A3-A26", "A125-A147"], "scop_id2": "d1c3ma_", "range2": ["A52-A75", "A27-A51"], "source_file": "1c3m_A1A2.manual.ali"}
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d1c3ma__2:1c3m_A2-1c3m_A3
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d1c3ma__2
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malidup
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d1c3ma__2:1c3m_A2
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d1c3ma__2:1c3m_A3
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GGKITSIIIKGGTCIFSIQFVYKDKDNIEYHSGKFGVLGDKAETITFAE
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DEDITAISGTFGAYYHMTVVTSLTFQTNKKVYGPFGTVASSSFSLPLTK
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{"scop_id1": "d1c3ma_", "range1": ["A27-A75"], "scop_id2": "d1c3ma_", "range2": ["A76-A124"], "source_file": "1c3m_A2A3.manual.ali"}
|
d1c3ma__3:1c3m_A1-1c3m_A3
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d1c3ma__3
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malidup
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d1c3ma__3:1c3m_A1
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d1c3ma__3:1c3m_A3
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ASDIAVQAGPWGGNGGKRWLQTAHGKFAGFFGNSGDVLDSIGGVVVP
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KKVYGPFGTVASSSFSLPLTKDEDITAISGTFGAYYHMTVVTSLTFQTN
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{"scop_id1": "d1c3ma_", "range1": ["A3-A26", "A125-A147"], "scop_id2": "d1c3ma_", "range2": ["A104-A124", "A76-A103"], "source_file": "1c3m_A1A3.manual.ali"}
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d1c8ua1:1c8u_A1-1c8u_A2
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d1c8ua1
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malidup
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d1c8ua1:1c8u_A1
|
d1c8ua1:1c8u_A2
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SQALKNLLTLLNLEKIEEGLFRGQSEDLGLRQVFGGQVVGQALYAAKETVPEERLVHSFHSYFLRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIFYMTASFQAPEAGF
|
EHQKTMPSAPAPDGLPSETQIAQSLAHLLPPVLKDKFICDRPLEVRPVEFHNPLKGHVAEPHRQVWIRANGSVPDDLRVHQYLLGYASDLNFLPVALQPHGIGFLEPGIQIATIDHSMWFHRPFNLNEWLLYSVESTSASSARGFVRGEFYTQDGVLVASTVQEGVMRNHN
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[
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{"scop_id1": "d1c8ua1", "range1": ["A2-A115"], "scop_id2": "d1c8ua2", "range2": ["A116-A286"], "source_file": "1c8u.manual.ali"}
|
d1c8vb_:1c8v_B1-1c8v_B2
|
d1c8vb_
|
malidup
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d1c8vb_:1c8v_B1
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d1c8vb_:1c8v_B2
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GGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDWSGSYETAHYMLGTAAGP
|
HPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMFADFINDTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMMREQPEKEQLLVVNLSGRGDKDIFTVHD
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{"scop_id1": "d1c8vb_", "range1": ["B83-B194"], "scop_id2": "d1c8vb_", "range2": ["B195-B389"], "source_file": "1c8v.manual.ali"}
|
d1c9ya1:1c9y_A1-1c9y_A2
|
d1c9ya1
|
malidup
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d1c9ya1:1c9y_A1
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d1c9ya1:1c9y_A2
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KVQLKGRDLLTLKNFTGEEIKYMLWLSADLKFRIKQKGEYLPLLQGKSLGMIFEKRSTRTRLSTETGFALLGGHPCFLTTQDIHLGVNESLTDTARVLSSMADAVLARVYKQSDLDTLAKEASIPIINGLSDLYHPIQILADYLTLQEHYSSL
|
KGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDTWISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCLPRKPEEVDDEVFYSPRSLVFPEAENRKWTIMAVMVSLLTDYSPQLQKPKF
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148,
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149,
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[
150,
156
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] | 13.235294 |
[
"class:Alpha and beta proteins (a/b)",
"fold:ATC-like",
"superfamily:Aspartate/ornithine carbamoyltransferase",
"family:Aspartate/ornithine carbamoyltransferase",
"protein:Ornithine transcarbamoylase"
] |
{"scop_id1": "d1c9ya1", "range1": ["A34-A186"], "scop_id2": "d1c9ya2", "range2": ["A187-A354"], "source_file": "1c9y.manual.ali"}
|
d1cdwa1:1cdw_A1-1cdw_A2
|
d1cdwa1
|
malidup
|
d1cdwa1:1cdw_A1
|
d1cdwa1:1cdw_A2
|
SGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEENSRLAARKYARVVQKLGF
|
PAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK
|
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84,
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[
85,
88
],
[
86,
89
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[
87,
90
]
] | 27.272727 |
[
"class:Alpha and beta proteins (a+b)",
"fold:TBP-like",
"superfamily:TATA-box binding protein-like",
"family:TATA-box binding protein (TBP), C-terminal domain",
"protein:TATA-box binding protein (TBP), C-terminal domain"
] |
{"scop_id1": "d1cdwa1", "range1": ["A155-A242"], "scop_id2": "d1cdwa2", "range2": ["A243-A333"], "source_file": "1cdw.manual.ali"}
|
d1ce8a1:1ce8_A1-1ce8_A2
|
d1ce8a1
|
malidup
|
d1ce8a1:1ce8_A1
|
d1ce8a1:1ce8_A2
|
SLDDPEALTKIRRELKDAGADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEE
|
LVRLEEKVAEVGITGLNADFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHP
|
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54,
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[
"class:All alpha proteins",
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"family:Carbamoyl phosphate synthetase, large subunit connection domain",
"protein:Carbamoyl phosphate synthetase, large subunit connection domain"
] |
{"scop_id1": "d1ce8a1", "range1": ["A414-A468"], "scop_id2": "d1ce8a1", "range2": ["A469-A524"], "source_file": "1ce8.manual.ali"}
|
d1ciy_2_1:1ciy_A1-1ciy_A2
|
d1ciy_2_1
|
malidup
|
d1ciy_2_1:1ciy_A1
|
d1ciy_2_1:1ciy_A2
|
SHRLSHVTMLSQAAGAVYTLRAPTFSWQHRSAEFPIRTVSQLTREIYTNPVLENFDGSFRGMAQRIEQNIRQPHL
|
MDILNSITIYTDVHRGFNYWSGHQITASPVGFSGPEFAFPLFGNAGNAAPPVLVSLTG
|
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49,
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[
"class:All beta proteins",
"fold:beta-Prism I",
"superfamily:delta-Endotoxin (insectocide), middle domain",
"family:delta-Endotoxin (insectocide), middle domain",
"protein:delta-Endotoxin (insectocide), middle domain"
] |
{"scop_id1": "d1ciy_2", "range1": ["A428-A461", "A256-A296"], "scop_id2": "d1ciy_2", "range2": ["A297-A328", "A329-A354"], "source_file": "1ciy_A1A2.manual.ali"}
|
d1ciy_2_2:1ciy_A2-1ciy_A3
|
d1ciy_2_2
|
malidup
|
d1ciy_2_2:1ciy_A2
|
d1ciy_2_2:1ciy_A3
|
MDILNSITIYTDVHRGFNYWSGHQITASPVGFSGPEFAFPLFGNAGNAAPPVLVSLTG
|
LGIFRTLSSPLYRRIILGSGPNNQELFVLDGTEFSFASLTTNLPSTIYRQRGTVDSLDVIPPQDNSVPPRAGF
|
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[
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"fold:beta-Prism I",
"superfamily:delta-Endotoxin (insectocide), middle domain",
"family:delta-Endotoxin (insectocide), middle domain",
"protein:delta-Endotoxin (insectocide), middle domain"
] |
{"scop_id1": "d1ciy_2", "range1": ["A297-A354"], "scop_id2": "d1ciy_2", "range2": ["A355-A427"], "source_file": "1ciy_A2A3.manual.ali"}
|
d1ciy_2_3:1ciy_A1-1ciy_A3
|
d1ciy_2_3
|
malidup
|
d1ciy_2_3:1ciy_A1
|
d1ciy_2_3:1ciy_A3
|
SHRLSHVTMLSQAAGAVYTLRAPTFSWQHRSAEFPIRTVSQLTREIYTNPVLENFDGSFRGMAQRIEQNIRQPHL
|
LGIFRTLSSPLYRRIILGSGPNNQELFVLDGTEFSFASLTTNLPSTIYRQRGTVDSLDVIPPQDNSVPPRAGF
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51,
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[
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"superfamily:delta-Endotoxin (insectocide), middle domain",
"family:delta-Endotoxin (insectocide), middle domain",
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] |
{"scop_id1": "d1ciy_2", "range1": ["A428-A461", "A256-A296"], "scop_id2": "d1ciy_2", "range2": ["A355-A393", "A394-A427"], "source_file": "1ciy_A1A3.manual.ali"}
|
d1cjda1:1cjd_A1-1cjd_A2
|
d1cjda1
|
malidup
|
d1cjda1:1cjd_A1
|
d1cjda1:1cjd_A2
|
LRNQQAMAANLQARQIVLQQSYPVIQQVETQTFDPANRSVFDVTPANVGIVKGFLVKVTAAITNNHATEAVALTDFGPANLVQRVIYYDPDNQRHTETSGWHLHFVNTAKQGAPFLSSMVTDSPIKYGDVMNVIDAPATIAAGATGELTMYYWVPLAYSETDLTGAVLANVPQSKQRLKLEFANNNTAFAAVGANPLEAIYQGAGAADCEFEEISYTVYQSYLDQLPVGQ
|
NGYILPLIDLSTLYNLENSAQAGLTPNVDFVVQYANLYRYLSTIAVFDNGGSFNAGTDINYLSQRTANFSDTRKLDPKTWAAQTRRRIATDFPKGVYYCDNRDKPIYTLQYGNVGFVVNPKTVNQNARLLMGYEYFTSR
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221,
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222,
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223,
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224,
137
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] | 5.982906 |
[
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"superfamily:Group II dsDNA viruses VP",
"family:Coat protein p3",
"protein:Coat protein p3"
] |
{"scop_id1": "d1cjda1", "range1": ["A15-A244"], "scop_id2": "d1cjda2", "range2": ["A245-A383"], "source_file": "1cjd.manual.ali"}
|
d1ck7a3:1ck7_A1-1ck7_A2
|
d1ck7a3
|
malidup
|
d1ck7a3:1ck7_A1
|
d1ck7a3:1ck7_A2
|
EGQVVRVKYGNADGEYCKFPFLFNGKEYNSCTDTGRSDGFLWCSTTYNFEKDGKYGFCPHEA
|
LFTMGGNAEGQPCKFPFRFQGTSYDSCTTEGRTDGYRWCGTTEDYDRDKKYGFCPE
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] | 53.571429 |
[
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{"scop_id1": "d1ck7a3", "range1": ["A217-A278"], "scop_id2": "d1ck7a4", "range2": ["A279-A334"], "source_file": "1ck7_A1A2.manual.ali"}
|
d1ckv__:1ckv_A1-1ckv_A2
|
d1ckv__
|
malidup
|
d1ckv__:1ckv_A1
|
d1ckv__:1ckv_A2
|
MSVNSNAYDAGIMGLKGKDFADQFFADENQVVHESDTVVLVLKKSDEINTFIEEILLTDYKKNVNPTVNVEDRAGYWWIKAN
|
GKIEVDCDEISELLGRQFNVYDFLVDVSSTIGRAYTLGNKFTITSELMGLDRKLEDYHA
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] |
{"scop_id1": "d1ckv__", "range1": ["A1-A82"], "scop_id2": "d1ckv__", "range2": ["A83-A141"], "source_file": "1ckv.manual.ali"}
|
d1cpo_1:1cpo_A1-1cpo_A2
|
d1cpo_1
|
malidup
|
d1cpo_1:1cpo_A1
|
d1cpo_1:1cpo_A2
|
RAPCPALNALANHGYIPHDGRAISRETLQNAFLNHMGIANSVIELALTNAFVVCEYVTGSDCGDSLVNLTLLAEPHAFEHD
|
NFDAETFQTSLDVVAGKTHFDYADMNEIRLQRESLSNELDFPGWFTESKPIQNVESGFIFALVSDFNLPDNDENPLVRIDWWKYWFTNES
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73,
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[
"class:All alpha proteins",
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"superfamily:Cloroperoxidase",
"family:Cloroperoxidase",
"protein:Cloroperoxidase"
] |
{"scop_id1": "d1cpo_1", "range1": ["26-106"], "scop_id2": "d1cpo_2", "range2": ["129-218"], "source_file": "1cpo.manual.ali"}
|
d1cy8a__1:1cy8_A1-1cy8_A2
|
d1cy8a__1
|
malidup
|
d1cy8a__1:1cy8_A1
|
d1cy8a__1:1cy8_A2
|
RGLSAGRVQSVAVRLVVEREREIKAFPARFSEASLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEENFRELM
|
LKDMEADAQKLYQLIWRQFVACQMGAPFITSTLQQAASTRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLHEAIRPSDVNVMAES
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71,
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72,
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73,
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[
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"superfamily:Prokaryotic type I DNA topoisomerase",
"family:Prokaryotic type I DNA topoisomerase",
"protein:DNA topoisomerase I, 67K N-terminal domain"
] |
{"scop_id1": "d1cy8a_", "range1": ["A189-A214", "A474-A514", "A515-A538"], "scop_id2": "d1cy8a_", "range2": ["A380-A403", "A281-A327", "A365-A379"], "source_file": "1cy8_A1A2.manual.ali"}
|
d1cy8a__2:1cy8_A3-1cy8_A4
|
d1cy8a__2
|
malidup
|
d1cy8a__2:1cy8_A3
|
d1cy8a__2:1cy8_A4
|
VPEEFWEVDASTTTPSGEALALQVTHQNDKPFRPVNKEQTQAAVSLLEKAALTLVELTPAQHFTKP
|
TPAKYDSTTLTVGAGDFRLKARGRILRFDGWTKVMPALRKGDEDRILPAVNKGDRYSVLEREDKPTTSKP
|
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63,
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[
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] |
{"scop_id1": "d1cy8a_", "range1": ["A215-A264", "A458-A473"], "scop_id2": "d1cy8a_", "range2": ["A404-A457", "A265-A280"], "source_file": "1cy8_A3A4.manual.ali"}
|
d1d2oa1:1d2o_A1-1d2o_A2
|
d1d2oa1
|
malidup
|
d1d2oa1:1d2o_A1
|
d1d2oa1:1d2o_A2
|
ETTSSIGEKVWDDKDNQDGKRPEKVSVNLLANGEKVKTLDVTSETNWKYEFKDLPKYDEGKKIEYTVTEDHVKDYTTDINGTTITNKYTP
|
GETSATVTKNWDDNNNQDGKRPTEIKVELYQDGKATGKTAILNESNNWTHTWTGLDEKAKGQQVKYTVEELTKVKGYTTHVDNNDMGNLITTNKYTP
|
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86,
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[
87,
94
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[
88,
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89,
96
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] | 41.111111 |
[
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"superfamily:Cna protein B-type domain (Pfam 05738)",
"family:Cna protein B-type domain (Pfam 05738)",
"protein:B repeat unit of collagen binding surface protein (cna)"
] |
{"scop_id1": "d1d2oa1", "range1": ["A535-A624"], "scop_id2": "d1d2oa2", "range2": ["A625-A721"], "source_file": "1d2o.manual.ali"}
|
d1d4va1:1d4v_A2-1d4v_A3
|
d1d4va1
|
malidup
|
d1d4va1:1d4v_A2
|
d1d4va1:1d4v_A3
|
THWNDLLFCLRCTRCDSGEVELSPCTTTRNTVCQCEEGTF
|
REEDSPEMCRKCRTGCPRGMVKVGDCTPWSDIECVHKESGD
|
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31,
32
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[
32,
33
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[
33,
34
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[
34,
35
]
] | 28.571429 |
[
"class:Small proteins",
"fold:TNF receptor-like",
"superfamily:TNF receptor-like",
"family:TNF receptor-like",
"protein:Death receptor-5 (dr5) fragment"
] |
{"scop_id1": "d1d4va2", "range1": ["A105-A144"], "scop_id2": "d1d4va3", "range2": ["A145-A185"], "source_file": "1d4v_A2A3.manual.ali"}
|
d1d5ya1:1d5y_A1-1d5y_A2
|
d1d5ya1
|
malidup
|
d1d5ya1:1d5y_A1
|
d1d5ya1:1d5y_A2
|
QAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRA
|
RRLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLG
|
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50,
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51,
47
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52,
48
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53,
49
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] | 16.666667 |
[
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"fold:DNA/RNA-binding 3-helical bundle",
"superfamily:Homeodomain-like",
"family:AraC type transcriptional activator",
"protein:Rob transcription factor, N-terminal domain"
] |
{"scop_id1": "d1d5ya1", "range1": ["A3-A56"], "scop_id2": "d1d5ya2", "range2": ["A57-A121"], "source_file": "1d5y.manual.ali"}
|
d1d8ha_:1d8h_A1-1d8h_A2
|
d1d8ha_
|
malidup
|
d1d8ha_:1d8h_A1
|
d1d8ha_:1d8h_A2
|
ELRSFIELEMKFGVIIDAKGPDRVNPPVSSQCVFTELDAHLTPNIDASLFKELSKYIRGISEVTENTGKFSIIESQTRDSVYRVGPRFLRMSTDIKTGRVGQFIEKRHVA
|
DVKISLNLELPVPDNDPPEKYKSQSPISERTKDRVSYIHNDSCTRIDITKVENHSETTHEVELEINTP
|
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106,
64
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[
107,
65
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[
108,
66
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[
109,
67
]
] | 12.068966 |
[
"class:Alpha and beta proteins (a+b)",
"fold:mRNA triphosphatase CET1",
"superfamily:mRNA triphosphatase CET1",
"family:mRNA triphosphatase CET1",
"protein:mRNA triphosphatase CET1"
] |
{"scop_id1": "d1d8ha_", "range1": ["A299-A413"], "scop_id2": "d1d8ha_", "range2": ["A425-A500"], "source_file": "1d8h.manual.ali"}
|
d1ddza1:1ddz_A1-1ddz_A2
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d1ddza1
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malidup
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d1ddza1:1ddz_A1
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d1ddza1:1ddz_A2
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VMSDLEKKFIELEAKLVAQPAGQAMPGKSNIFANNEAWRQEMLKQDPEFFNRLANGQSPEYLWIGCADSRVPANQLLDLPAGEVFVHRNIANQCIHSDISFLSVLQYAVQYLKVKHILVCGHYGCGGAKAALGDSRLGLIDNWLRHIRDVRRMNAKYLDKCKDGDEELNRLIELNVLEQVHNVCATSIVQDAWDAGQELTVQGVVYGVGDGKLRDLGVVVNSSDDIS
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GESELDSTMEKLTAELVQQTPGKLKEGANRVFVNNENWRQKMLKQDPQFFSNLAHTQTPEILWIGCADSRVPANQIINLPAGEVFVHRNIANQCIHSDMSFLSVLQYAVQYLKVKRVVVCGHYACGGCAAALGDSRLGLIDNWLRHIRDVRRHNQAELSRITDPKDSLNRLIEINVLEQMHNVCATSIVQDAWDAGQELEVQGVVYGVGDGKLRDMGVVAKANDDIG
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[
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"fold:Resolvase-like",
"superfamily:beta-carbonic anhydrase, cab",
"family:beta-carbonic anhydrase, cab",
"protein:beta-carbonic anhydrase"
] |
{"scop_id1": "d1ddza1", "range1": ["A84-A310"], "scop_id2": "d1ddza2", "range2": ["A338-A564"], "source_file": "1ddz.manual.ali"}
|
d1df9c_:1df9_C1-1df9_C2
|
d1df9c_
|
malidup
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d1df9c_:1df9_C1
|
d1df9c_:1df9_C2
|
SHDEPSESSEPCCDSCDCTKSIPPQCHCANIRLNSCHS
|
ACKSCICTRSMPGKCRCLDTDDFCYKPCESMDKD
|
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[
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{"scop_id1": "d1df9c_", "range1": ["C501-C538"], "scop_id2": "d1df9c_", "range2": ["C539-C572"], "source_file": "1df9.manual.ali"}
|
d1dfca1:1dfc_A1-1dfc_A2
|
d1dfca1
|
malidup
|
d1dfca1:1dfc_A1
|
d1dfca1:1dfc_A2
|
QFGLINCGNKYLTAEAFGFKVNASASSLKKKQIWTLEAAVCLRSHLGRYLAADKDGNVTCEREVPGPDCRFLIVAHDDGRWSLQSEAHRRYFGGTEDRLSCFAQTVSPAEKWSVHIA
|
QVNIYSVTRKRYAHLSARPADEIAVDRDVPWGVDSLITLAFQDQRYSVQTADHRFLRHDGRLVARPEPATGYTLEFRSGKVAFRDCEGRYLAPSGPSGTLKAGKATKVGKDELFALEQS
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] | 14.814815 |
[
"class:All beta proteins",
"fold:beta-Trefoil",
"superfamily:Actin-crosslinking proteins",
"family:Fascin",
"protein:Fascin"
] |
{"scop_id1": "d1dfca1", "range1": ["A1013-A1137"], "scop_id2": "d1dfca2", "range2": ["A1141-A1259"], "source_file": "1dfc.manual.ali"}
|
d1dgsa1:1dgs_A1-1dgs_A2
|
d1dgsa1
|
malidup
|
d1dgsa1:1dgs_A1
|
d1dgsa1:1dgs_A2
|
CPAKRFEAIRHYASRKAMDIEGLGEKLIERLLEKGLVRDVADLYHLRKEDLLGLERMGEKSAQNLLRQIEESKHR
|
GLERLLYALGLPGVGEVLARNLARRFGTMDRLLEASLEELIEVEEVGELTARAILETLKDPAFRDLVRRLKEAGV
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[
"class:All alpha proteins",
"fold:SAM domain-like",
"superfamily:RuvA domain 2-like",
"family:NAD+-dependent DNA ligase, domain 3",
"protein:NAD+-dependent DNA ligase, domain 3"
] |
{"scop_id1": "d1dgsa1", "range1": ["A427-A501"], "scop_id2": "d1dgsa1", "range2": ["A502-A576"], "source_file": "1dgs.manual.ali"}
|
d1dkrb1:1dkr_B1-1dkr_B2
|
d1dkrb1
|
malidup
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d1dkrb1:1dkr_B1
|
d1dkrb1:1dkr_B2
|
SNQYGDKNLKIFSLNSNPELAKEIADIVGVQLGKCSVTRFSDGEVQINIEESIRGCDCYIIQSTSDPVNEHIMELLIMVDALKRASAKTINIVIPYYGYARQDRKARSREPITAKLFANLLETAGATRVIALDLHAPQIQGFFDIPIDHLMGVPILGEYFEGKN
|
LEDIVIVSPDHGGVTRARKLADRLKAPIAIIDKRMNIVGNIEGKTAILIDDIIDTAGTITLAANALVENGAKEVYACCTHPVLSGPAVERINNSTIKELVVTNSIKLPEEKKIERFKQLSVGPLLAEAIIRVHEQQSVSYLF
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163,
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[
"class:Alpha and beta proteins (a/b)",
"fold:PRTase-like",
"superfamily:PRTase-like",
"family:Phosphoribosylpyrophosphate synthetase",
"protein:Phosphoribosylpyrophosphate synthetase"
] |
{"scop_id1": "d1dkrb1", "range1": ["B1-B164"], "scop_id2": "d1dkrb2", "range2": ["B165-B315"], "source_file": "1dkr.manual.ali"}
|
d1dlpa1:1dlp_A1-1dlp_A2
|
d1dlpa1
|
malidup
|
d1dlpa1:1dlp_A1
|
d1dlpa1:1dlp_A2
|
NNILFGLSHEGSHPQTLHAAQSLELSSFRFTMQSDCNLVLFDSDVRVWASNTAGATGCRAVLQSDGLLVILTAQNTIRWSSGTKGSIGNYVLVLQPDRTVTIYGPGLWDSGTSNKGSVVV
|
ANNGNSILYSTNDNHPQTLHATQSLQLSPYRLSMETDCNLVLFDRDDRVWSTNTAGKGTGCRAVLQPNGRMDVLTNQNIAVWTSGNSRSAGRYVFVLQPDRNLAIYGGALWTT
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[
"class:All beta proteins",
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"superfamily:alpha-D-mannose-specific plant lectins",
"family:alpha-D-mannose-specific plant lectins",
"protein:Fetuin-binding protein Scafet precursor"
] |
{"scop_id1": "d1dlpa1", "range1": ["A1-A120"], "scop_id2": "d1dlpa2", "range2": ["A121-A235"], "source_file": "1dlp.manual.ali"}
|
d1dmr_2:1dmr_A1-1dmr_A2
|
d1dmr_2
|
malidup
|
d1dmr_2:1dmr_A1
|
d1dmr_2:1dmr_A2
|
TDGGAATKGPEWLAASGASVIPVARVVDMLENPGAEFDFNGTRSKFPDVKMAYWVGGNPFVHHQDRNRMVKAWEKLETFVVHDFQWTPTARHADIVLPATTSYERNDIETIGDYSNTGILAMKKSWDQALDLVAAEVKRVEETYGPEGVFGGSYGWKSPGRLHNCTTLLRRMLTLAGGYVNGAGD
|
YSTGAAQVIMPHVVGTLEVYEQQTAWPVLAENTEVMVFWAADPIKTSQIGWVIPEHGAYPGLEALKAKGTKVIVIDPVRTKTVEFFGAEHITPKPQTDVAIMLGMAHTLVAEDLYDKDFIANYTSGFDKFLPYLDGETDSTPKTAEWAEGISGVPAETIKELARLFESKRTMLAAGWSMQRMHHGEQAHWMLVTLASMLGQIGLPGGGFGLSYHYSGGGTPSTSGPALAGI
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[
180,
208
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[
181,
209
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182,
210
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[
"class:Alpha and beta proteins (a/b)",
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"superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3",
"family:Formate dehydrogenase/DMSO reductase, domains 1-3",
"protein:Dimethylsulfoxide reductase (DMSO reductase)"
] |
{"scop_id1": "d1dmr_2", "range1": ["A377-A500", "A85-A145"], "scop_id2": "d1dmr_2", "range2": ["A146-A258", "A259-A376"], "source_file": "1dmr.manual.ali"}
|
d1doza_:1doz_A1-1doz_A2
|
d1doza_
|
malidup
|
d1doza_:1doz_A1
|
d1doza_:1doz_A2
|
SRKKMGLLVMAYGTPYKEEDIERYYTHIRRGRKPEPEMLQDLKDRYEAIGGISPLAQITEQQAHNLEQHLNEIQDEITFKAYIGLKHIEPFIEDAVAEMHKDGITEAVSIVLAPHFSTFSVQSYNKRAKEEAEKLGGLTITSVESWYDEPKFVTYWVDRVKETYASMPE
|
DERENAMLIVSAHSLPEKIKEFGDPYPDQLHESAKLIAEGAGVSEYAVGWQSEGNTPDPWLGPDVQDLTRDLFEQKGYQAFVYVPVGFVADHLEVLYDNDYECKVVTDDIGASYYRPEMPNAKPEFIDALATVVLKKLGR
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161,
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162,
136
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163,
137
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164,
138
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] | 17.647059 |
[
"class:Alpha and beta proteins (a/b)",
"fold:Chelatase-like",
"superfamily:Chelatase",
"family:Ferrochelatase",
"protein:Ferrochelatase"
] |
{"scop_id1": "d1doza_", "range1": ["A2-A170"], "scop_id2": "d1doza_", "range2": ["A171-A310"], "source_file": "1doz.manual.ali"}
|
d1e0ca1:1e0c_A1-1e0c_A2
|
d1e0ca1
|
malidup
|
d1e0ca1:1e0c_A1
|
d1e0ca1:1e0c_A2
|
MDDFASLPLVIEPADLQARLSAPELILVDLTSAARYAEGHIPGARFVDPKRTQLGQPPAPGLQPPREQLESLFGELGHRPEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGLTAWLAEDRPLSRELPAPA
|
GGPVALSLHDEPTASRDYLLGRLGAADLAIWDARSPQEYRGEKVLAAKGGHIPGAVNFEWTAAMDPSRALRIRTDIAGRLEELGITPDKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSWGEWGNHPDTPVEL
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125,
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126,
133
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127,
134
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128,
135
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] | 21.367521 |
[
"class:Alpha and beta proteins (a/b)",
"fold:Rhodanese/Cell cycle control phosphatase",
"superfamily:Rhodanese/Cell cycle control phosphatase",
"family:Sulfurtransferase (rhodanese)",
"protein:Sulfurtransferase"
] |
{"scop_id1": "d1e0ca1", "range1": ["A1-A135"], "scop_id2": "d1e0ca2", "range2": ["A136-A271"], "source_file": "1e0c.manual.ali"}
|
d1e3pa3:1e3p_A3-1e3p_A4
|
d1e3pa3
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malidup
|
d1e3pa3:1e3p_A3
|
d1e3pa3:1e3p_A4
|
NETHYAEAVIDNGAFGTRTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYAAGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLYDVVAINAASASTQLAGLP
|
TDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRREIGHGALAERAIVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLK
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"class:Alpha and beta proteins (a+b)",
"fold:Ribosomal protein S5 domain 2-like",
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"family:Ribonuclease PH domain 1-like",
"protein:Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4"
] |
{"scop_id1": "d1e3pa3", "range1": ["A3-A151"], "scop_id2": "d1e3pa4", "range2": ["A346-A482"], "source_file": "1e3p.manual.ali"}
|
d1e3pa6:1e3p_A6-1e3p_A7
|
d1e3pa6
|
malidup
|
d1e3pa6:1e3p_A6
|
d1e3pa6:1e3p_A7
|
FSGPIGGVRVALIRGQWVAFPTHTELEDAVFDMVVAGRVLEDGDVAIMMVEAEATEKTIQLVKDGAEAPTEEVVAAGLDAAKPFIKVLCKAQADLAAKAAKPTGEFPVFLD
|
APVAGIAMGLISQEINGETHYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAAALKQARDARLHILDVMMEAIDTPDEMSPN
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"protein:Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5"
] |
{"scop_id1": "d1e3pa6", "range1": ["A152-A262"], "scop_id2": "d1e3pa7", "range2": ["A483-A578"], "source_file": "1e3p_A6A7.manual.ali"}
|
d1e9hb1:1e9h_B1-1e9h_B2
|
d1e9hb1
|
malidup
|
d1e9hb1:1e9h_B1
|
d1e9hb1:1e9h_B2
|
VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAP
|
TVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTGQSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREKYKNSKYHGVSLLNPPETLNL
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] | 14.285714 |
[
"class:All alpha proteins",
"fold:Cyclin-like",
"superfamily:Cyclin-like",
"family:Cyclin",
"protein:Cyclin A"
] |
{"scop_id1": "d1e9hb1", "range1": ["B175-B309"], "scop_id2": "d1e9hb2", "range2": ["B310-B432"], "source_file": "1e9h.manual.ali"}
|
d1eb7a1:1eb7_A1-1eb7_A2
|
d1eb7a1
|
malidup
|
d1eb7a1:1eb7_A1
|
d1eb7a1:1eb7_A2
|
SEQQRELGKKLFFDPRLSRSHVLSCNTCHNVGTGGADNVPTSVGHGWQKGPRNSPTVFNAVFNAAQFWDGRAKDLGEQAKGPIQNSVEMHSTPQLVEQTLGSIPEYVDAFRKAFPKAGKPVSFDNMALAIEAYEATLVTPDS
|
LDAQQKKGLKAFMDSGCSACHNGINLGGQAYFPFGLVKKPDADKGRFAVTKTQSDEYVFRAAPLRNVALTAPYFHSGQVWELKDAVAIMGNAQLGKQLAPDDVENIVAFLHSLSGKQP
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139,
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141,
117
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] | 19.767442 |
[
"class:All alpha proteins",
"fold:Cytochrome c",
"superfamily:Cytochrome c",
"family:Di-heme cytochrome c peroxidase",
"protein:Di-heme cytochrome c peroxidase"
] |
{"scop_id1": "d1eb7a1", "range1": ["A27-A168"], "scop_id2": "d1eb7a2", "range2": ["A181-A304"], "source_file": "1eb7.manual.ali"}
|
d1efdn_:1efd_N1-1efd_N2
|
d1efdn_
|
malidup
|
d1efdn_:1efd_N1
|
d1efdn_:1efd_N2
|
GIDPNRIVALEWLPVELLLALGIVPYGVADTINYRLWVSEPPLPDSVIDVGLRTEPNLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNLQSAAETHLAQYE
|
DFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIPNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRFQRVPAVWFYGATLSAMHFVRVLDNAIG
|
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111,
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112,
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113,
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114,
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] | 12.790698 |
[
"class:Alpha and beta proteins (a/b)",
"fold:Chelatase-like",
"superfamily:Helical backbone metal receptor",
"family:Periplasmic ferric siderophore binding protein FhuD",
"protein:Periplasmic ferric siderophore binding protein FhuD"
] |
{"scop_id1": "d1efdn_", "range1": ["N32-N159"], "scop_id2": "d1efdn_", "range2": ["N160-N293"], "source_file": "1efd.manual.ali"}
|
d1efud4:1efu_B1-1efu_B2
|
d1efud4
|
malidup
|
d1efud4:1efu_B1
|
d1efud4:1efu_B2
|
VAADGVIKTKIDGNYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVAGKITDVEVLKAQFEEERVALVAKIGENINIRRVAALEG
|
DVLGSYQHGARIGVLVAAKGADEELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQSGKPKEIAEKMVEGRMKKFTGEVSLTGQPFVMEPSKTVGQLLKEHNAEVTGFIRFEVGEGIEKVETDFAAEVAAMSKQS
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{"scop_id1": "d1efub4", "range1": ["B55-B139"], "scop_id2": "d1efub2", "range2": ["B140-B282"], "source_file": "1efu_1.manual.ali"}
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d1ei5a1:1ei5_A1-1ei5_A2
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d1ei5a1
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d1ei5a1:1ei5_A1
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d1ei5a1:1ei5_A2
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EVSRVEADSAWFGSWLDDETGLVLSLEDAGHGRMKARFGTSPEMMDVVSANEARSAVTTIRRDGETIELVRASENLRLSMKRV
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KGEAKHDIIGRYHSDELDADLLLVSEGGAIYGAFEGFLGKSDMYPLYSVGSDVWLLPVQRSMDAPSPGEWKLVFRRDDKGEITGLSVGCWLARGVEYRRVQP
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{"scop_id1": "d1ei5a1", "range1": ["A336-A418"], "scop_id2": "d1ei5a2", "range2": ["A419-A520"], "source_file": "1ei5.manual.ali"}
|
d1emn_1:1emn_A1-1emn_A2
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d1emn_1
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d1emn_1:1emn_A1
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d1emn_1:1emn_A2
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SAVDMDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNEC
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VDTDECSVGNPCGNGTCKNVIGGFECTCEEGFEPGPMMTCE
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{"scop_id1": "d1emn_1", "range1": ["A2124-A2164"], "scop_id2": "d1emn_2", "range2": ["A2165-A2205"], "source_file": "1emn.manual.ali"}
|
d1erza_:1erz_A1-1erz_A2
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d1erza_
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malidup
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d1erza_:1erz_A1
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d1erza_:1erz_A2
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TRQMILAVGQQGPIARAETREQVVVRLLDMLTKAASRGANFIVFPELALTTFFPRWHFTDEAELDSFYETEMPGPVVRPLFEKAAELGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIVGKYRKIHLPGHKEYEAYRPFQHLEKRYFEPGDLGFPVYDVD
|
AAKMGMFICNDRRWPEAWRVMGLRGAEIICGGYNTPTHNPPVPQHDHLTSFHHLLSMQAGSYQNGAWSAAAGKVGMEENCMLLGHSCIVAPTGEIVALTTTLEDEVITAAVD
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{"scop_id1": "d1erza_", "range1": ["A1-A162"], "scop_id2": "d1erza_", "range2": ["A163-A274"], "source_file": "1erz.manual.ali"}
|
d1exja2:1exj_A1-1exj_A2
|
d1exja2
|
malidup
|
d1exja2:1exj_A1
|
d1exja2:1exj_A2
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LGEVFVLDEEEIRIIQTEAEGIGPENVLNASYSKLKKFIESADGFTNNSYGATFSFQPYTSIDEMTYRHIFTPVLTNKQI
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{"scop_id1": "d1exja2", "range1": ["A121-A200"], "scop_id2": "d1exja2", "range2": ["A201-A277"], "source_file": "1exj.manual.ali"}
|
d1f0ia1:1f0i_A1-1f0i_A2
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d1f0ia1
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d1f0ia1:1f0i_A1
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d1f0ia1:1f0i_A2
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NPKASPATGNVPVIAVGGLGVGIKDVDPKSTFRPDLPTASDTKCVVGLHDNTNADRDYDTVNPEESALRALVASAKGHIEISQQDLNATCPPLPRYDIRLYDALAAKMAAGVKVRIVVSDPANRGYSQIKSLSEISDTLRNRLANITGGQQAAKTAMCSNLQLATFRSSPNGKWADGHPYAQHHKLVSVDSSTFYIGSKNLYPSWLQDFGYIVESPEAAKQLDAKLLDPQWKYSQETATVDYARGICGA
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{"scop_id1": "d1f0ia1", "range1": ["A6-A254"], "scop_id2": "d1f0ia2", "range2": ["A255-A514"], "source_file": "1f0i.manual.ali"}
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d1f34b_:1f34_B1-1f34_B2
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d1f34b_
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malidup
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d1f34b_:1f34_B1
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d1f34b_:1f34_B2
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"fold:Pepsin inhibitor-3",
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"family:Pepsin inhibitor-3",
"protein:Pepsin inhibitor-3"
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{"scop_id1": "d1f34b_", "range1": ["B1-B74"], "scop_id2": "d1f34b_", "range2": ["B75-B148"], "source_file": "1f34.manual.ali"}
|
d1f52a2:1f52_A1-1f52_A2
|
d1f52a2
|
malidup
|
d1f52a2:1f52_A1
|
d1f52a2:1f52_A2
|
RDPRSIAKRAEDYLRATGIADTVLFGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWNSSTKYEGGNKGHRPGVKGGYFPVPPVDSAQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYKYVVHNVAHRFGKTATFMP
|
KPMFGDNGSGMHCHMSLAKNGTNLFSGDKYAGLSEQALYYIGGVIKHAKAINALANPTTNSYKRLVPGYEAPVMLAYSARNRSASIRIPVVASPKARRIEVRFPDPAANPYLCFAALLMAGLDGIKNKIHPG
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] |
{"scop_id1": "d1f52a2", "range1": ["A102-A257"], "scop_id2": "d1f52a2", "range2": ["A258-A389"], "source_file": "1f52.manual.ali"}
|
d1f53a_:1f53_A1-1f53_A2
|
d1f53a_
|
malidup
|
d1f53a_:1f53_A1
|
d1f53a_:1f53_A2
|
IDHVPCRGGENFLKIWSHSGGQQSVDCYANRGRIDFGGWWVDKISTG
|
NNDLIYYDANGDSVRVDRWHDITYPNRPPKVNSIEIL
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] |
{"scop_id1": "d1f53a_", "range1": ["A1-A47"], "scop_id2": "d1f53a_", "range2": ["A48-A84"], "source_file": "1f53.manual.ali"}
|
d1f9za_:1f9z_A1-1f9z_A2
|
d1f9za_
|
malidup
|
d1f9za_:1f9z_A1
|
d1f9za_:1f9z_A2
|
MRLLHTMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGVDK
|
YELGTAYGHIALSVDNAAEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEE
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"family:Glyoxalase I (lactoylglutathione lyase)",
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] |
{"scop_id1": "d1f9za_", "range1": ["A1-A65"], "scop_id2": "d1f9za_", "range2": ["A66-A126"], "source_file": "1f9z.manual.ali"}
|
d1feca1:1fec_A1-1fec_A2
|
d1feca1
|
malidup
|
d1feca1:1fec_A1
|
d1feca1:1fec_A2
|
SRAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFGWELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSWPQHLGIEGDDLCITSNEAFYLDEA
|
PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRVMLTPVAINEGAAFVDTVFANKPRATD
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173,
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174,
135
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[
175,
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176,
137
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[
"class:Alpha and beta proteins (a/b)",
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"superfamily:FAD/NAD(P)-binding domain",
"family:FAD/NAD-linked reductases, N-terminal and central domains",
"protein:Trypanothione reductase"
] |
{"scop_id1": "d1feca1", "range1": ["A1-A186"], "scop_id2": "d1feca2", "range2": ["A187-A357"], "source_file": "1fec.manual.ali"}
|
d1fga___1:1fga_A1-1fga_A2
|
d1fga___1
|
malidup
|
d1fga___1:1fga_A1
|
d1fga___1:1fga_A2
|
PKRLYCKNGGFFLRIHPDGRVDGVREKSDPHIKLQLQAE
|
ERGVVSIKGVCANRYLAMKEDGRLLASKCVTDECFFFERLESN
|
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38,
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] | 13.157895 |
[
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"superfamily:Cytokine",
"family:Fibroblast growth factors (FGF)",
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{"scop_id1": "d1fga__", "range1": ["A20-A58"], "scop_id2": "d1fga__", "range2": ["A59-A101"], "source_file": "1fga_A1A2.manual.ali"}
|
d1fga___2:1fga_A2-1fga_A3
|
d1fga___2
|
malidup
|
d1fga___2:1fga_A2
|
d1fga___2:1fga_A3
|
ERGVVSIKGVCANRYLAMKEDGRLLASKCVTDECFFFERLESN
|
NYNTYRSRKYTSWYVALKRTGQYKLGSKTGPGQKAILFLPMS
|
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39,
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] | 14.705882 |
[
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"family:Fibroblast growth factors (FGF)",
"protein:Basic FGF (FGF2)"
] |
{"scop_id1": "d1fga__", "range1": ["A59-A101"], "scop_id2": "d1fga__", "range2": ["A102-A143"], "source_file": "1fga_A2A3.manual.ali"}
|
d1fga___3:1fga_A1-1fga_A3
|
d1fga___3
|
malidup
|
d1fga___3:1fga_A1
|
d1fga___3:1fga_A3
|
PKRLYCKNGGFFLRIHPDGRVDGVREKSDPHIKLQLQAE
|
NYNTYRSRKYTSWYVALKRTGQYKLGSKTGPGQKAILFLPMS
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37,
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[
"class:All beta proteins",
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"superfamily:Cytokine",
"family:Fibroblast growth factors (FGF)",
"protein:Basic FGF (FGF2)"
] |
{"scop_id1": "d1fga__", "range1": ["A20-A58"], "scop_id2": "d1fga__", "range2": ["A102-A143"], "source_file": "1fga_A1A3.manual.ali"}
|
d1fjra_:1fjr_A1-1fjr_A2
|
d1fjra_
|
malidup
|
d1fjra_:1fjr_A1
|
d1fjra_:1fjr_A2
|
DILECDYFDTVDISAAQKLQNGSYLFEGLLVPAILTGEYDFRILPDDSKQKVARHIRGCVCK
|
DLPMPCDGMFYLDNREEQDKYTLFENGTFFRHFDRVTLRKREYCLQHLTFADGNATSIRIAPHNCLIV
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59,
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60,
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61,
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[
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"superfamily:Methuselah ectodomain",
"family:Methuselah ectodomain",
"protein:Methuselah ectodomain"
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{"scop_id1": "d1fjra_", "range1": ["A1-A62"], "scop_id2": "d1fjra_", "range2": ["A121-A188"], "source_file": "1fjr.manual.ali"}
|
d1fo4a5_1:1jro_B1-1jro_B3
|
d1fo4a5_1
|
malidup
|
d1fo4a5_1:1jro_B1
|
d1fo4a5_1:1jro_B3
|
LEGQAALALPAEGGVVIHCSSQHPSEIQHKVAHALGLAFHDVRVEMRRMGGGFGGKESQGNHLAIACAVAARATGRPCKMRYDRDD
|
LTHLNQAGALVQIYTDGSVALNHGGTEMGQGLHAKMVQVAAAVLGIDPVQVRITATDTSKVPNTSATAASSGADMNGMAVKDACETLRGRLAGFVAAREGCAARDVIFDAGQVQASGKSWRFAEIVAAAYMARISLSATGFYATPKLSWDRL
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[
"class:Alpha and beta proteins (a+b)",
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"superfamily:Molybdenum cofactor-binding domain",
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"protein:Xanthine dehydrogenase chain B, C-terminal domain"
] |
{"scop_id1": "d1jrob2", "range1": ["B176-B261"], "scop_id2": "d1jrob2", "range2": ["B461-B612"], "source_file": "1jro_B1B3.manual.ali"}
|
d1fo4a5_2:1jro_B2-1jro_B4
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d1fo4a5_2
|
malidup
|
d1fo4a5_2:1jro_B2
|
d1fo4a5_2:1jro_B4
|
DMVITGKRHDFRIRYRIGADASGKLLGADFVHLARCGWSADLSLPVCDRAMLHADGSYFVPALRIESHRLRTNTQSNTAFRGFGGPQGALGMERAIEHLARGMGRDPAELRALNFYDPP
|
RGQGRPFLYFAYGAAITEVVIDRLTGENRILRTDILHDAGASLNPALDIGQIEGAYVQGAGWLTTEELVWDHCGRLMTHAPSTYKIPAFSDRPRIFNVALWDQPNREETIFRSKAVGEPPFLLGISAFLALHDACAACGPHWPDLQAPA
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100,
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] | 9.210526 |
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"class:Alpha and beta proteins (a+b)",
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"superfamily:Molybdenum cofactor-binding domain",
"family:Molybdenum cofactor-binding domain",
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] |
{"scop_id1": "d1jrob2", "range1": ["B262-B380"], "scop_id2": "d1jrob2", "range2": ["B613-B761"], "source_file": "1jro_B2B4.manual.ali"}
|
d1foka1_1:1fok_A1-1fok_A2
|
d1foka1_1
|
malidup
|
d1foka1_1:1fok_A1
|
d1foka1_1:1fok_A2
|
KIRTFGWVQNPGKFENLKRVVQVFDRNSKVHNEVKNIKIPTLVKESKIQKELVAIMNQHDLIYTYKELVGTGTSIRSEAPCDAIIQATIADQGNKKGYIDNWSSDGFLRWAHALGFIEYINKSDSFVITDVGLAYSKSAD
|
GSAIEKEILIEAISSYPPAIRILTLLEDGQHLTKFDLGKNLGFSGESGFTSLPEGILLDTLANAMPKDKGEIRNNWEGSSDKYARMIGGWLDKLGLVKQGKKEFIIPTPDNKEFISHAFKITGEGLKVLRRAKGS
|
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135,
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136,
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[
137,
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138,
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[
"class:All alpha proteins",
"fold:DNA/RNA-binding 3-helical bundle",
"superfamily:Winged helix DNA-binding domain",
"family:Restriction endonuclease FokI, N-terminal (recognition) domain",
"protein:Restriction endonuclease FokI, N-terminal (recognition) domain"
] |
{"scop_id1": "d1foka1", "range1": ["A4-A143"], "scop_id2": "d1foka2", "range2": ["A144-A281"], "source_file": "1fok_A1A2.manual.ali"}
|
d1foka1_2:1fok_A2-1fok_A3
|
d1foka1_2
|
malidup
|
d1foka1_2:1fok_A2
|
d1foka1_2:1fok_A3
|
GSAIEKEILIEAISSYPPAIRILTLLEDGQHLTKFDLGKNLGFSGESGFTSLPEGILLDTLANAMPKDKGEIRNNWEGSSDKYARMIGGWLDKLGLVKQGKKEFIIPTPDNKEFISHAFKITGEGLKVLRRAKGS
|
VPKRVYWEMLATNLTDKEYVRTRRALILEILIKAGSLKIEQIQDNLKKLGFDEVIETIENDIKGLINTGIFIEIKGRFYQLKDHILQFVIPNRGVTKQLV
|
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121,
81
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] | 15.384615 |
[
"class:All alpha proteins",
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"superfamily:Winged helix DNA-binding domain",
"family:Restriction endonuclease FokI, N-terminal (recognition) domain",
"protein:Restriction endonuclease FokI, N-terminal (recognition) domain"
] |
{"scop_id1": "d1foka2", "range1": ["A144-A281"], "scop_id2": "d1foka3", "range2": ["A287-A386"], "source_file": "1fok_A2A3.manual.ali"}
|
d1foka1_3:1fok_A1-1fok_A3
|
d1foka1_3
|
malidup
|
d1foka1_3:1fok_A1
|
d1foka1_3:1fok_A3
|
KIRTFGWVQNPGKFENLKRVVQVFDRNSKVHNEVKNIKIPTLVKESKIQKELVAIMNQHDLIYTYKELVGTGTSIRSEAPCDAIIQATIADQGNKKGYIDNWSSDGFLRWAHALGFIEYINKSDSFVITDVGLAYSKSAD
|
VPKRVYWEMLATNLTDKEYVRTRRALILEILIKAGSLKIEQIQDNLKKLGFDEVIETIENDIKGLINTGIFIEIKGRFYQLKDHILQFVIPNRGVTKQLV
|
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[
"class:All alpha proteins",
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"superfamily:Winged helix DNA-binding domain",
"family:Restriction endonuclease FokI, N-terminal (recognition) domain",
"protein:Restriction endonuclease FokI, N-terminal (recognition) domain"
] |
{"scop_id1": "d1foka1", "range1": ["A4-A143"], "scop_id2": "d1foka3", "range2": ["A287-A386"], "source_file": "1fok_A1A3.manual.ali"}
|
d1ftra1:1ftr_A1-1ftr_A2
|
d1ftra1
|
malidup
|
d1ftra1:1ftr_A1
|
d1ftra1:1ftr_A2
|
MEINGVEIEDTFAEAFEAKMARVLITAASHKWAMIAVKEATGFGTSVIMCPAEAGIDCGYVPPEETPDGRPGVTIMIGHNDEDELKEQLLDRIGQCVMTAPTASAFDAMPEAEKEDEDRVGYKL
|
KIPVVEGEFIVEDSFGITTGVAGGNFYIMAESQPAGLQAAEAAVDAIKGVEGAYAPFPGGIVASASKVGSKQYDFLPASTNDAYCPTVEDNELPEGVKCVYEIVINGLNEEAVKEAMRVGIEAACQQPGVVKISAGNFGGKLGQYEIHLHDLF
|
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120,
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[
121,
150
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122,
151
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[
123,
152
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] | 18.478261 |
[
"class:Alpha and beta proteins (a+b)",
"fold:Ferredoxin-like",
"superfamily:Formylmethanofuran:tetrahydromethanopterin formyltransferase",
"family:Formylmethanofuran:tetrahydromethanopterin formyltransferase",
"protein:Formylmethanofuran:tetrahydromethanopterin formyltransferase"
] |
{"scop_id1": "d1ftra1", "range1": ["A1-A124"], "scop_id2": "d1ftra2", "range2": ["A144-A296"], "source_file": "1ftr.manual.ali"}
|
d1fwqa_:1hxr_B1-1hxr_B2
|
d1fwqa_
|
malidup
|
d1fwqa_:1hxr_B1
|
d1fwqa_:1hxr_B2
|
ELVSAEGRNRKAVLCQRCGSRVLQPGTALFSRRQLFLPSMRKKPDLVDGSNPDGDVLEEHWLVNDMFIFLERVSHE
|
NVKFLVCADCEIGPIGWHCLDDKNSFYVAENVGFTKDVG
|
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[
"class:All beta proteins",
"fold:Mss4-like",
"superfamily:Mss4-like",
"family:RabGEF Mss4",
"protein:RabGEF Mss4"
] |
{"scop_id1": "d1hxrb_", "range1": ["B9-B77", "B117-B123"], "scop_id2": "d1hxrb_", "range2": ["B88-B116", "B78-B87"], "source_file": "1hxr.manual.ali"}
|
d1fx8a_:1fx8_A1-1fx8_A2
|
d1fx8a_
|
malidup
|
d1fx8a_:1fx8_A1
|
d1fx8a_:1fx8_A2
|
TLKGQCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIWGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFS
|
TYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGPLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRKLIGRHL
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"superfamily:Aquaporin-like",
"family:Aquaporin-like",
"protein:Glycerol uptake facilitator protein GlpF"
] |
{"scop_id1": "d1fx8a_", "range1": ["A6-A136"], "scop_id2": "d1fx8a_", "range2": ["A137-A259"], "source_file": "1fx8.manual.ali"}
|
d1fyze_:1fyz_E1-1fyz_E2
|
d1fyze_
|
malidup
|
d1fyze_:1fyz_E1
|
d1fyze_:1fyz_E2
|
KLGIHSNDTRDAWVNKIAQLNTLEKAAEMLKQFRMDHTTPFRNSYELDNDYLWIEAKLEEKVAVLKARAFNEVDFRH
|
KTAFGEDAKSVLDGTVAKMNAAKDKWEAEKIHIGFRQAYKPPIMPVNYFLDGERQLGTRLMELRNLNYYDTPLEELRKQRGVRVVHLQSP
|
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[
"class:All alpha proteins",
"fold:Open three-helical up-and-down bundle",
"superfamily:Methane monooxygenase hydrolase, gamma subunit",
"family:Methane monooxygenase hydrolase, gamma subunit",
"protein:Methane monooxygenase hydrolase, gamma subunit"
] |
{"scop_id1": "d1fyze_", "range1": ["E3-E79"], "scop_id2": "d1fyze_", "range2": ["E80-E169"], "source_file": "1fyz.manual.ali"}
|
d1g1ba_:1g1b_A1-1g1b_A2
|
d1g1ba_
|
malidup
|
d1g1ba_:1g1b_A1
|
d1g1ba_:1g1b_A2
|
SHPALTQLRALRYCKEIPALDPQLLDWLLLEDSMTKRFEQQGKTVSVTMIREGFVEQNEIPEELPLLPKESRYWLREILLCADGEPWLAGRTVVPVSTL
|
SGPELALQKLGKTPLGRYLFTSSTLTRDFIEIGRDAGLWGRRSRLRLSGKPLLLTELFLPASPLY
|
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[
"class:Alpha and beta proteins (a+b)",
"fold:Chorismate lyase",
"superfamily:Chorismate lyase",
"family:Chorismate lyase",
"protein:Chorismate lyase"
] |
{"scop_id1": "d1g1ba_", "range1": ["A1-A99"], "scop_id2": "d1g1ba_", "range2": ["A100-A164"], "source_file": "1g1b.manual.ali"}
|
d1g4ma1:1g4m_A1-1g4m_A2
|
d1g4ma1
|
malidup
|
d1g4ma1:1g4m_A1
|
d1g4ma1:1g4m_A2
|
GTRVFKKASPNGKLTVYLGKRDFVDHIDLVEPVDGVVLVDPEYLKERRVYVTLTCAFRYGREDLDVLGLTFRKDLFVANVQSFPPAPEDKKPLTRLQERLIKKLGEHAYPFTFEIPPNLPCSVTLQPGPEDTGKACGVDYEVKAFCAENLEEKIHKRNSVRLVIRKVQYAP
|
ERPGPQPTAETTRQFLMSDKPLHLEASLDKEIYYHGEPISVNVHVTNNTNKTVKKIKISVRQYADICLFNTAQYKCPVAMEEADDTVAPSSTFCKVYTLTPFLANNREKRGLALDGKLKHEDTNLASSTLLREGANREILGIIVSYKVKVKLVVSRGSDVAVELPFTLMHPKPK
|
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[
"class:All beta proteins",
"fold:Immunoglobulin-like beta-sandwich",
"superfamily:E set domains",
"family:Arrestin",
"protein:Arrestin"
] |
{"scop_id1": "d1g4ma1", "range1": ["A5-A175"], "scop_id2": "d1g4ma2", "range2": ["A176-A357"], "source_file": "1g4m.manual.ali"}
|
d1g61a__1:1g61_A1-1g61_A2
|
d1g61a__1
|
malidup
|
d1g61a__1:1g61_A1
|
d1g61a__1:1g61_A2
|
MIIRKYFSGIPTIGVLALTTEEITLLPIFLDKDDVNEVSEVLET
|
KCLQTNIGGSSLVGSLSVANKYGLLLPKIVEDEELDRIKNFLK
|
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39
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[
40,
40
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[
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41
],
[
42,
42
]
] | 16.27907 |
[
"class:Alpha and beta proteins (a+b)",
"fold:Pentein, beta/alpha-propeller",
"superfamily:Pentein",
"family:Ribosome anti-association factor eIF6 (aIF6)",
"protein:Ribosome anti-association factor eIF6 (aIF6)"
] |
{"scop_id1": "d1g61a_", "range1": ["A2003-A2046"], "scop_id2": "d1g61a_", "range2": ["A2047-A2089"], "source_file": "1g61_A1A2.manual.ali"}
|
d1g61a__2:1g61_A3-1g61_A4
|
d1g61a__2
|
malidup
|
d1g61a__2:1g61_A3
|
d1g61a__2:1g61_A4
|
ENNLDLNVEIIKSKNTALGNLILTNDKGALISPELKDFKKDIEDSLN
|
VEVEIGTIAELPTVGSNAVVTNKGCLTHPLVEDDELEFLKSLFK
|
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[
44,
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[
45,
42
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[
46,
43
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] | 22.5 |
[
"class:Alpha and beta proteins (a+b)",
"fold:Pentein, beta/alpha-propeller",
"superfamily:Pentein",
"family:Ribosome anti-association factor eIF6 (aIF6)",
"protein:Ribosome anti-association factor eIF6 (aIF6)"
] |
{"scop_id1": "d1g61a_", "range1": ["A2090-A2136"], "scop_id2": "d1g61a_", "range2": ["A2137-A2180"], "source_file": "1g61_A3A4.manual.ali"}
|
End of preview. Expand
in Data Studio
MALIDUP (Hugging Face Port)
Benchmark of duplicated domain pairs from the same protein chain, curated by structure-based alignment.
Overview
- 241 duplicated domain pairs from the same polypeptide chains
- Expert-curated alignments based on structural similarity
- Useful for evaluating alignment methods under remote but homologous scenarios
Features
pair_id,group_id,set_nameseq1_id,seq2_id,seq1,seq2ref_alignment: list of aligned residue index pairs (0-based)percent_identity: sequence identity across aligned positionsscop_labels: SCOP class, fold, superfamily, family, etc.meta: additional metadata (JSON string)
Usage
from datasets import load_dataset
ds = load_dataset("DeepFoldProtein/MALIDUP", name="all", split="test")
ex = ds[0]
print(ex["seq1_id"], ex["seq2_id"], ex["ref_alignment"][:5])
Citation
Please cite:
@article{Cheng2007,
title = {MALIDUP: A database of manually constructed structure alignments for duplicated domain pairs},
volume = {70},
ISSN = {1097-0134},
url = {http://dx.doi.org/10.1002/prot.21783},
DOI = {10.1002/prot.21783},
number = {4},
journal = {Proteins: Structure, Function, and Bioinformatics},
publisher = {Wiley},
author = {Cheng, Hua and Kim, Bong‐Hyun and Grishin, Nick V.},
year = {2007},
month = oct,
pages = {1162--1166}
}
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