PaDT-MLLM/RefCOCO

Patch-as-Decodable-Token: Towards Unified Multi-Modal Vision Tasks in MLLMs

[🔗 Released Code] [🤗 Datasets] [🤗 Checkpoints]

[📄 Tech Report] [🤗 Paper]

Figure A. PaDT pipeline.

🌟 Introduction

We are pleased to introduce Patch-as-Decodable Token (PaDT), a unified paradigm that enables multimodal large language models (MLLMs) to directly generate both textual and visual outputs.

At the core of PaDT are Visual Reference Tokens (VRTs). Unlike conventional MLLMs that represent visual targets using text-based bounding box coordinates (which are often less semantic and poorly aligned with the actual objects, as shown in Figure B), PaDT allows MLLMs to represent visual targets directly through visual patches. These VRTs let the model reason about visual information within the output sequence in a more natural and direct way.

By introducing VRTs, we achieve semantic reasoning and object-specific visual tokens prediction within the MLLM’s autoregressive generation process. The predicted visual tokens are then decoded into low-level outputs such as localization or segmentation maps using a plug-and-play lightweight PaDT decoder.

As illustrated in Figure C, we have validated PaDT across four major visual perception and understanding tasks. In all cases, PaDT achieves state-of-the-art performance compared to conventional character-by-character coordinate-generation MLLMs.

Why PaDT Succeeds?

The success of PaDT stems from its deep insight into the visual capability bottlenecks of MLLMs.

1. Native Vision-Language Alignment: Instead of “fitting” vision into text space, PaDT directly treats visual patches as decodable tokens, achieving seamless modality alignment.

2. Dynamic Visual Binding: A dynamic embedding mechanism tightly binds Visual Reference Tokens (VRTs) to each image, preventing cross-image confusion.

3. Unified Token Space: Enables the LLM to handle language and vision uniformly, simplifying training and improving consistency.

4. Lightweight Decoder: Decouples dense prediction from the LLM, preserving its semantic reasoning while adding precise spatial output capability.

5. Strong Multi-Task Generalization: The PaDT Pro model, jointly trained on REC/RES/OVD/RIC, can switch tasks via prompts and outperforms single-task models.

We hope this work will inspire further exploration in the community:

• What does true multimodal reasoning look like?

• And is a purely text-based output ever sufficient for visual reasoning?

Figure B. Some observations on conventional character-by-character coordinate-generation MLLMs and our PaDT.

Figure C. PaDT works on four visual perception and understanding tasks.

Quick Start

Clone this repo, and set up the environment with a few commands.

git clone https://github.com/Gorilla-Lab-SCUT/PaDT.git

conda create -n PaDT python=3.11
conda activate PaDT

bash setup.sh

The following contains a code snippet illustrating how to use our PaDT.

import torch
from transformers import AutoProcessor
from qwen_vl_utils import process_vision_info
from PaDT import PaDTForConditionalGeneration, VisonTextProcessingClass, parseVRTintoCompletion


TEST_IMG_PATH="./eval/imgs/000000368335.jpg"
MODEL_PATH="PaDT-MLLM/PaDT_Pro_3B"

# load model
model = PaDTForConditionalGeneration.from_pretrained(MODEL_PATH, torch_dtype=torch.bfloat16, device_map={"": 0})
# load processor
processor = AutoProcessor.from_pretrained(
    MODEL_PATH
)
processor = VisonTextProcessingClass(processor, model.config.vision_config.spatial_merge_size)
processor.prepare(model.model.embed_tokens.weight.shape[0])

# question prompt
PROMPT = """Please carefully check the image and detect the object this sentence describes: "The car is on the left side of the horse"."""

# construct conversation
message = [
    {
        "role": "user",
        "content": [
            {
                "type": "image",
                "image": TEST_IMG_PATH
            }, {
                "type": "text",
                "text": PROMPT
            }
        ]
    }
]
text = processor.apply_chat_template(message, tokenize=False, add_generation_prompt=True)
image_inputs, video_inputs = process_vision_info(message)
prompt_inputs = processor(
    text=[text],
    images=image_inputs,
    padding=True,
    padding_side="left",
    return_tensors="pt",
    add_special_tokens=False
).to("cuda:0")

# generate
with torch.inference_mode():
    generate_returned_result = model.generate(**prompt_inputs, use_cache=True, max_new_tokens=1024, do_sample=False,
        output_hidden_states=True, return_dict_in_generate=True)
    prompt_length = prompt_inputs["input_ids"].size(1)
    completion_ids = generate_returned_result['sequences'][:, prompt_length:]

    # extract Visual Reference Tokens within the sequence
    completions, feats, labels, vrts, vrts_feats = parseVRTintoCompletion(processor, completion_ids, generate_returned_result['hidden_states'], torch.Tensor([False]))

    print("\ngenerate result:", completions[0])

    # decode low-level visual task results
    low_res_image_embeds = generate_returned_result.past_image_embeds
    high_res_image_embeds = generate_returned_result.past_high_res_image_embeds
    visual_pe = generate_returned_result.past_visual_pe
    decoded_list = model.vl_decode(feats, low_res_image_embeds, high_res_image_embeds, prompt_inputs['image_grid_thw'], visual_pe)

    print(f"\npred_bboxes: {decoded_list['pred_boxes']},\npred_scores: {decoded_list['pred_score'].sigmoid()}\n")

Models

• PaDT_OVD: Trained on COCO2017 training set.
• PaDT_REC: Trained on RefCOCO/+/g training set.
• PaDT_RIC: Trained on Referring Image Captioning training set.
• PaDT_Pro: Trained on the combined set of COCO2017, RefCOCO/+/g and Referring Image Captioning training sets.

Model	Base VLM	Checkpoint	Task Type
PaDT_OVD_3B	Qwen2.5VL-3B	PaDT-MLLM/PaDT_OVD_3B	Open Vocabulary Detection
PaDT_REC_3B	Qwen2.5VL-3B	PaDT-MLLM/PaDT_REC_3B	Referring Expression Comprehension/Segmentation
PaDT_RIC_3B	Qwen2.5VL-3B	PaDT-MLLM/PaDT_RIC_3B	Referring Image Captioning
PaDT_Pro_3B	Qwen2.5VL-3B	PaDT-MLLM/PaDT_Pro_3B	ALL
PaDT_OVD_7B	Qwen2.5VL-7B	PaDT-MLLM/PaDT_OVD_7B	Open Vocabulary Detection
PaDT_REC_7B	Qwen2.5VL-7B	PaDT-MLLM/PaDT_REC_7B	Referring Expression Comprehension/Segmentation
PaDT_RIC_7B	Qwen2.5VL-7B	PaDT-MLLM/PaDT_RIC_7B	Referring Image Captioning
PaDT_Pro_7B	Qwen2.5VL-7B	PaDT-MLLM/PaDT_Pro_7B	ALL

Showcase

Here are some randomly selected test examples showcasing PaDT’s excellent performance.

• Referring Expression Comprehension/Segmentation and Open Vocabulary Detection Tasks

• Referring Image Captioning Task

• Token Activation Map Comparison

Training Instruction

Download Datasets:

• COCO

• RefCOCO/+/g

  wget https://web.archive.org/web/20220413011718/https://bvisionweb1.cs.unc.edu/licheng/referit/data/refcoco.zip
  wget https://web.archive.org/web/20220413011656/https://bvisionweb1.cs.unc.edu/licheng/referit/data/refcoco+.zip
  wget https://web.archive.org/web/20220413012904/https://bvisionweb1.cs.unc.edu/licheng/referit/data/refcocog.zip
  

Unpack these datasets and place them under the following directory:

PaDT/
 ├── dataset/
 │    ├── coco/
 │    │     ├── annotations/
 │    │     ├── train2014/
 │    │     ├── train2017/
 │    │     ├── val2014/
 │    │     └── val2017/
 │    └── RefCOCO/
 │          ├── refcoco/
 │          ├── refcoco+/
 │          └── refcocog/

Preprocess the datasets:

• 1. Preprocess via our scripts. (Please first update the dataset path configuration in the preprocessing scripts)

  cd src/preprocess
  python process_coco.py
  python process_refcoco.py
  

• 2. We also released the preprocessed datasets which are ready to use for training in huggingface.

  Dataset	Dataset Path	Task Type
  COCO	PaDT-MLLM/COCO	Open Vocabulary Detection
  RefCOCO	PaDT-MLLM/RefCOCO	Referring Expression Comprehension/Segmentation
  RIC	PaDT-MLLM/ReferringImageCaptioning	Referring Image Captioning

The training scripts in run_scripts are ready to execute.

For example: Train the PaDT-Pro 3B model on a single node with 8×96 GB GPUs.

bash ./run_scripts/padt_pro_3b_sft.sh

Evaluation

We provide a simple inference example in eval/test_demo.py. More evaluation scripts will be added soon.

License Agreement

PaDT is licensed under Apache 2.0.

References

• Patch-as-Decodable-Token: Towards Unified Multi-Modal Vision Tasks in MLLMs

License Agreement

PaDT is licensed under Apache 2.0.

Citation

We kindly encourage citation of our work if you find it useful.

@misc{su2025patchasdecodabletokenunifiedmultimodalvision,
      title={Patch-as-Decodable-Token: Towards Unified Multi-Modal Vision Tasks in MLLMs}, 
      author={Yongyi Su and Haojie Zhang and Shijie Li and Nanqing Liu and Jingyi Liao and Junyi Pan and Yuan Liu and Xiaofen Xing and Chong Sun and Chen Li and Nancy F. Chen and Shuicheng Yan and Xulei Yang and Xun Xu},
      year={2025},
      eprint={2510.01954},
      archivePrefix={arXiv},
      primaryClass={cs.CV},
      url={https://arxiv.org/abs/2510.01954}, 
}