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eqtl

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test · 21.3k rows

chrom stringclasses 23 values	pos int64 14.7k 249M	ref stringclasses 4 values	alt stringclasses 4 values	pip float64 0 1	maf float64 0.01 0.5	consequence stringclasses 16 values	label bool 2 classes	tss_dist int64 0 5.43M	exon_dist int64 0 5.43M	match_group stringlengths 13 39
1	14,677	G	A	0.992227	0.055024	intron_variant	true	50,740	50,740	intron_variant_0
1	54,490	G	A	1	0.159938	intergenic_variant	true	10,927	10,927	intergenic_variant_0
1	63,671	G	A	0.998592	0.156388	non_coding_transcript_exon_variant	true	1,746	1,746	non_coding_transcript_exon_variant_0
1	63,697	T	C	0.977568	0.195652	non_coding_transcript_exon_variant	true	1,720	1,720	non_coding_transcript_exon_variant_1
1	108,826	G	C	1	0.040023	intron_variant	true	43,407	37,241	intron_variant_1
1	286,747	A	G	1	0.151295	intron_variant	true	164,929	163,991	intron_variant_2
1	788,511	G	C	0.006783	0.095685	intron_variant	false	101,857	101,857	intron_variant_79
1	826,965	A	G	0.999965	0.028132	non_coding_transcript_exon_variant	true	96,956	96,956	non_coding_transcript_exon_variant_2
1	849,670	G	A	0.001924	0.206767	non_coding_transcript_exon_variant	false	74,251	74,251	non_coding_transcript_exon_variant_56
1	851,741	T	A	0.004169	0.160069	non_coding_transcript_exon_variant	false	72,180	72,180	non_coding_transcript_exon_variant_73
1	852,019	G	T	0.007326	0.19373	splice_donor_5th_base_variant	false	71,902	71,902	splice_donor_5th_base_variant_0
1	917,584	T	G	0.996919	0.199664	non_coding_transcript_exon_variant	true	6,337	6,337	non_coding_transcript_exon_variant_3
1	936,972	G	C	0.993869	0.322299	intron_variant	true	2,301	1,076	intron_variant_3
1	963,620	C	T	0.975933	0.016227	non_coding_transcript_exon_variant	true	2,860	116	non_coding_transcript_exon_variant_4
1	975,014	C	T	0.999977	0.357634	3_prime_UTR_variant	true	1,502	0	3_prime_UTR_variant_0
1	978,953	C	G	0.92198	0.455994	missense_variant	true	3,138	0	missense_variant_0
1	995,982	G	A	0.999998	0.385654	non_coding_transcript_exon_variant	true	3,997	2,978	non_coding_transcript_exon_variant_5
1	998,750	G	C	0.92228	0.170116	upstream_gene_variant	true	1,229	210	upstream_gene_variant_0
1	999,842	C	A	0.913649	0.479245	missense_variant	true	137	0	missense_variant_1
1	1,000,731	C	T	0.914588	0.471427	upstream_gene_variant	true	405	405	upstream_gene_variant_1
1	1,013,855	G	A	0.006932	0.066667	intron_variant	false	358	127	intron_variant_235
1	1,015,336	A	T	0.948151	0.061077	downstream_gene_variant	true	1,839	796	downstream_gene_variant_0
1	1,021,472	C	T	0.006045	0.459391	intron_variant	false	1,349	727	intron_variant_98
1	1,091,327	C	A	0.981916	0.432272	synonymous_variant	true	845	0	synonymous_variant_0
1	1,103,805	C	T	0.998775	0.063859	intron_variant	true	2,320	2,149	intron_variant_4
1	1,111,648	A	G	0.938128	0.056478	intron_variant	true	4,431	3,372	intron_variant_5
1	1,171,767	G	A	0.977755	0.015464	intergenic_variant	true	2,111	2,111	intergenic_variant_1
1	1,173,872	A	G	0.999998	0.318565	non_coding_transcript_exon_variant	true	6	6	non_coding_transcript_exon_variant_6
1	1,217,221	A	G	0.999374	0.055225	3_prime_UTR_variant	true	3,068	0	3_prime_UTR_variant_1
1	1,217,251	C	A	1	0.117091	3_prime_UTR_variant	true	3,098	0	3_prime_UTR_variant_2
1	1,220,424	T	C	0.986704	0.115646	non_coding_transcript_exon_variant	true	6,271	1,419	non_coding_transcript_exon_variant_7
1	1,281,631	A	C	0.009698	0.113725	intron_variant	false	292	21	intron_variant_411
1	1,285,896	C	T	0.997892	0.010327	intron_variant	true	1,211	28	intron_variant_6
1	1,321,228	G	A	0.999952	0.128333	intron_variant	true	3,400	132	intron_variant_7
1	1,321,991	C	G	0.00831	0.018182	splice_polypyrimidine_tract_variant	false	2,637	7	splice_polypyrimidine_tract_variant_1
1	1,327,982	G	A	0.004407	0.117225	3_prime_UTR_variant	false	2,741	0	3_prime_UTR_variant_2
1	1,374,801	A	G	0.939584	0.074534	splice_polypyrimidine_tract_variant	true	354	0	splice_polypyrimidine_tract_variant_0
1	1,407,014	G	A	0.928647	0.03597	synonymous_variant	true	16	0	synonymous_variant_1
1	1,407,232	G	C	1	0.206178	5_prime_UTR_variant	true	56	0	5_prime_UTR_variant_0
1	1,419,214	A	G	1	0.129061	synonymous_variant	true	1,875	0	synonymous_variant_2
1	1,440,430	C	G	0.999921	0.262734	3_prime_UTR_variant	true	4,695	0	3_prime_UTR_variant_3
1	1,445,187	T	G	0.977652	0.255888	intergenic_variant	true	4,500	2,305	intergenic_variant_2
1	1,452,888	C	A	0.007438	0.252294	intron_variant	false	2,974	454	intron_variant_115
1	1,456,829	G	C	0.998681	0.197115	intron_variant	true	6,915	298	intron_variant_8
1	1,490,718	G	A	0.985992	0.01916	intron_variant	true	18,934	47	intron_variant_9
1	1,497,903	C	T	0.997855	0.019315	downstream_gene_variant	true	14,257	55	downstream_gene_variant_1
1	1,500,069	T	C	0.007243	0.013015	intergenic_variant	false	12,091	2,221	intergenic_variant_91
1	1,500,526	T	C	0.9857	0.014193	intergenic_variant	true	11,634	2,678	intergenic_variant_3
1	1,506,823	C	T	0.948958	0.018933	intron_variant	true	5,337	5,337	intron_variant_10
1	1,517,976	T	C	0.999686	0.068383	intron_variant	true	5,446	201	intron_variant_11
1	1,525,927	C	T	0.99046	0.014439	intron_variant	true	1,972	532	intron_variant_12
1	1,531,013	G	A	0.986648	0.014475	intron_variant	true	7,058	1,682	intron_variant_13
1	1,534,166	G	A	0.999945	0.310606	3_prime_UTR_variant	true	6,182	0	3_prime_UTR_variant_4
1	1,538,924	C	A	0.00582	0.32358	intron_variant	false	1,424	130	intron_variant_276
1	1,658,830	C	G	0.999653	0.232621	intron_variant	true	172	82	intron_variant_14
1	1,659,060	G	A	0.999402	0.271394	upstream_gene_variant	true	48	48	upstream_gene_variant_2
1	1,665,061	C	T	0.999999	0.21677	3_prime_UTR_variant	true	6,049	0	3_prime_UTR_variant_5
1	1,665,581	C	G	0.998828	0.237304	3_prime_UTR_variant	true	6,569	0	3_prime_UTR_variant_6
1	1,674,848	G	C	0.970624	0.030805	intron_variant	true	15,836	613	intron_variant_15
1	1,680,158	G	A	0.98803	0.026369	intron_variant	true	12,564	3,312	intron_variant_16
1	1,688,409	C	G	0.921037	0.410778	intron_variant	true	4,313	2,565	intron_variant_17
1	1,689,221	G	A	1	0.034921	intron_variant	true	3,501	1,753	intron_variant_18
1	1,730,405	G	C	0.951414	0.404046	non_coding_transcript_exon_variant	true	6,048	6,048	non_coding_transcript_exon_variant_8
1	1,733,506	G	A	1	0.011795	intron_variant	true	9,149	9,149	intron_variant_19
1	1,742,468	G	C	0.991183	0.467058	intron_variant	true	14,798	8,762	intron_variant_20
1	1,742,672	C	T	0.924624	0.390924	intron_variant	true	14,594	8,558	intron_variant_21
1	1,743,238	G	C	0.996256	0.38812	intron_variant	true	14,028	7,992	intron_variant_22
1	1,744,499	C	T	1	0.437462	non_coding_transcript_exon_variant	true	12,767	6,731	non_coding_transcript_exon_variant_9
1	1,845,552	G	T	1	0.012972	intron_variant	true	13,267	5,870	intron_variant_23
1	1,851,793	C	T	0.914395	0.032179	intron_variant	true	19,508	12,111	intron_variant_24
1	1,892,085	G	C	0.999861	0.169859	5_prime_UTR_variant	true	968	968	5_prime_UTR_variant_1
1	1,913,643	T	C	0.008263	0.432067	intergenic_variant	false	1,463	1,463	intergenic_variant_89
1	1,921,045	A	G	0.938207	0.352239	downstream_gene_variant	true	1,766	904	downstream_gene_variant_2
1	1,959,595	C	T	0.955724	0.065152	intron_variant	true	31,332	367	intron_variant_25
1	2,019,112	G	A	1	0.188887	upstream_gene_variant	true	215	215	upstream_gene_variant_3
1	2,022,137	G	A	0.991452	0.396907	intron_variant	true	2,653	2,646	intron_variant_26
1	2,061,538	G	T	1	0.201155	intron_variant	true	10,730	1,947	intron_variant_27
1	2,189,679	C	T	0.999999	0.369459	3_prime_UTR_variant	true	5,067	0	3_prime_UTR_variant_7
1	2,217,665	C	T	0.956601	0.015686	intron_variant	true	10,652	10,652	intron_variant_28
1	2,300,156	A	C	0.974979	0.063665	intron_variant	true	71,837	2,820	intron_variant_29
1	2,320,766	C	T	0.90081	0.14538	non_coding_transcript_exon_variant	true	67,569	485	non_coding_transcript_exon_variant_10
1	2,340,787	C	T	0.940313	0.281142	intron_variant	true	47,548	3,937	intron_variant_30
1	2,412,603	G	C	0.977347	0.042636	intron_variant	true	39	39	intron_variant_31
1	2,416,027	C	T	0.904936	0.216366	intergenic_variant	true	2,230	2,230	intergenic_variant_4
1	2,493,455	T	C	0.999864	0.31792	non_coding_transcript_exon_variant	true	13,567	1,399	non_coding_transcript_exon_variant_11
1	2,496,273	C	T	0.003858	0.392625	intron_variant	false	16,385	332	intron_variant_178
1	2,522,373	G	A	0.009239	0.27561	intron_variant	false	4,221	573	intron_variant_326
1	2,684,707	G	T	0.008349	0.426247	intron_variant	false	51,691	39,144	intron_variant_458
1	2,747,586	G	A	0.004344	0.0141	intron_variant	false	42,077	36,021	intron_variant_1
1	2,771,799	C	G	0.005217	0.012777	intron_variant	false	17,864	11,808	intron_variant_24
1	2,781,735	C	T	0.00665	0.034654	intron_variant	false	7,928	1,872	intron_variant_415
1	2,784,424	A	G	0.00665	0.034654	non_coding_transcript_exon_variant	false	5,239	649	non_coding_transcript_exon_variant_92
1	2,787,547	T	C	0.00665	0.034654	synonymous_variant	false	2,116	0	synonymous_variant_1
1	3,373,043	T	C	0.991129	0.346516	non_coding_transcript_exon_variant	true	23,446	12,104	non_coding_transcript_exon_variant_12
1	3,425,232	C	T	0.981891	0.083333	non_coding_transcript_exon_variant	true	28,741	347	non_coding_transcript_exon_variant_13
1	3,531,796	G	A	0.907067	0.45082	intron_variant	true	348	348	intron_variant_32
1	3,774,964	A	G	1	0.287313	intron_variant	true	2,139	333	intron_variant_33
1	3,786,773	G	C	0.999998	0.381181	intron_variant	true	9,723	74	intron_variant_34
1	3,816,902	C	T	0.007031	0.413437	intron_variant	false	20,404	532	intron_variant_328
1	3,874,969	G	A	0.989985	0.433694	intron_variant	true	17,493	2,397	intron_variant_35

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Number of rows:

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