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gwas

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test · 4.59k rows

chrom stringclasses 22 values	pos int64 62.1k 249M	ref stringclasses 4 values	alt stringclasses 4 values	pip float64 0 1	maf float64 0 0.5	trait stringclasses 419 values	label bool 2 classes	consequence stringclasses 15 values	tss_dist int64 0 1.57M	exon_dist int64 0 1.57M	match_group stringlengths 13 37
1	930,312	C	G	0.001963	0.000683		false	missense_variant	0	0	missense_variant_5
1	976,215	A	G	0.005418	0.199367		false	missense_variant	2,703	0	missense_variant_39
1	1,203,822	T	C	0.006379	0.059558		false	synonymous_variant	1,856	0	synonymous_variant_0
1	1,224,844	C	T	0.001119	0.096291		false	intron_variant	3,750	876	intron_variant_11
1	1,291,417	C	G	0.003143	0.00369		false	missense_variant	4,308	0	missense_variant_40
1	1,318,875	G	A	0.001369	0.005841		false	stop_gained	5,753	0	stop_gained_1
1	1,765,746	G	T	0.001988	0.108653		false	intron_variant	7,171	300	intron_variant_47
1	2,056,929	C	G	0.001173	0.001435		false	intron_variant	6,121	356	intron_variant_20
1	2,293,397	G	A	0.999863	0.370771	Height	true	intron_variant	65,078	9,579	intron_variant_0
1	2,303,041	G	A	0.001888	0.000747		false	missense_variant	74,722	0	missense_variant_29
1	3,080,038	T	C	0.999997	0.232951	MCH,MCV,Plt,RBC	true	intron_variant	10,827	10,742	intron_variant_1
1	3,473,193	A	G	1	0.004888	eGFRcys	true	missense_variant	1,569	0	missense_variant_0
1	3,512,044	G	A	0.002189	0.140037		false	missense_variant	15,327	0	missense_variant_12
1	3,774,964	A	G	0.999972	0.230889	Hb,HbA1c,MCHC,RBC	true	intron_variant	2,139	333	intron_variant_2
1	3,842,701	A	G	0.006133	0.102378		false	intron_variant	14,491	406	intron_variant_82
1	4,293,227	A	G	0.001422	0.024866		false	intergenic_variant	361,380	361,380	intergenic_variant_29
1	5,947,199	G	A	0.001899	0.000578		false	missense_variant	43,726	0	missense_variant_8
1	6,463,518	T	A	0.001165	0.074121		false	non_coding_transcript_exon_variant	1,950	371	non_coding_transcript_exon_variant_0
1	6,701,642	C	T	0.001908	0.31755		false	intron_variant	158	85	intron_variant_24
1	6,954,041	G	A	0.004349	0.499251		false	intron_variant	168,510	65,858	intron_variant_74
1	7,734,229	A	G	0.955835	0.354394	Plt	true	intron_variant	10,683	1,630	intron_variant_3
1	7,832,811	A	G	0.008492	0.217046		false	intron_variant	20,252	2,650	intron_variant_9
1	8,305,128	G	C	0.003894	0.145084		false	intergenic_variant	12,984	12,984	intergenic_variant_18
1	8,447,713	G	A	0.990299	0.208466	Height	true	intron_variant	22,501	9,413	intron_variant_4
1	9,181,780	G	A	0.999999	0.074276	AST,Mono	true	non_coding_transcript_exon_variant	52,678	52,678	non_coding_transcript_exon_variant_0
1	9,295,877	G	T	0.991791	0.265138	DVT	true	intron_variant	1,349	1,283	intron_variant_5
1	9,296,617	T	C	0.999989	0.471841	Eosino	true	intron_variant	2,089	2,023	intron_variant_6
1	10,008,254	G	A	0.001224	0.0027		false	missense_variant	11,026	0	missense_variant_27
1	10,211,482	C	G	0.001257	0.278118		false	intron_variant	132	132	intron_variant_44
1	10,211,630	C	G	0.999401	0.11367	Plt	true	5_prime_UTR_variant	14	0	5_prime_UTR_variant_0
1	10,480,861	A	C	0.002144	0.338915		false	intron_variant	5,879	5,859	intron_variant_12
1	10,591,403	C	T	0.992815	0.097052	Balding_Type4	true	intron_variant	53,671	7,833	intron_variant_7
1	10,630,891	C	T	0.998035	0.059575	eGFR	true	downstream_gene_variant	14,183	133	downstream_gene_variant_0
1	10,692,299	T	C	0.999961	0.289136	eGFRcys	true	intron_variant	47,223	1,573	intron_variant_8
1	11,848,089	C	G	0.999998	0.01064	MAP,PP,SBP	true	5_prime_UTR_variant	254	0	5_prime_UTR_variant_1
1	12,039,288	A	G	1	0.100238	Eosino	true	intergenic_variant	19,790	7,243	intergenic_variant_0
1	12,115,601	G	A	1	0.014919	DVT,Eosino	true	missense_variant	10,296	0	missense_variant_1
1	12,126,001	A	G	0.001785	0.021319		false	missense_variant	102	0	missense_variant_14
1	12,186,118	C	T	0.999974	0.217788	Eosino	true	intron_variant	19,115	2,676	intron_variant_9
1	12,601,409	G	C	0.907933	0.329763	RBC	true	intron_variant	5,101	5,101	intron_variant_10
1	15,442,501	C	T	0.001203	0.034672		false	missense_variant	4,058	0	missense_variant_28
1	15,741,215	C	T	0.00166	0.050963		false	3_prime_UTR_variant	1,282	0	3_prime_UTR_variant_5
1	16,053,328	G	A	0.004216	0.043635		false	intron_variant	1,005	309	intron_variant_17
1	16,178,825	A	G	0.9801	0.419683	GGT	true	intergenic_variant	22,756	19,027	intergenic_variant_1
1	17,068,985	G	A	0.003648	0.39616		false	3_prime_UTR_variant	14,953	0	3_prime_UTR_variant_0
1	18,437,345	G	T	0.001628	0.26293		false	intergenic_variant	43,583	43,583	intergenic_variant_9
1	19,158,001	G	A	0.002575	0.001033		false	splice_region_variant	6,301	4	splice_region_variant_2
1	19,396,816	T	C	0.004568	0.232893		false	intron_variant	11,252	11,190	intron_variant_1
1	19,814,567	G	A	1	0.000846	eGFR	true	stop_gained	714	0	stop_gained_0
1	19,871,719	G	A	0.001488	0.051323		false	intergenic_variant	10,674	10,674	intergenic_variant_20
1	19,971,259	A	T	0.001426	0.122492		false	non_coding_transcript_exon_variant	8,346	4,170	non_coding_transcript_exon_variant_5
1	20,589,014	G	T	0.004616	0.013915		false	upstream_gene_variant	81	81	upstream_gene_variant_0
1	20,589,208	A	C	0.967922	0.34541	MCH,MCV	true	missense_variant	111	0	missense_variant_2
1	21,493,549	A	G	0.999997	0.388284	Ca	true	intergenic_variant	15,872	8,649	intergenic_variant_2
1	21,563,267	G	A	1	0.013531	ALP	true	missense_variant	7,034	0	missense_variant_3
1	21,564,094	G	A	1	0.000323	ALP	true	missense_variant	6,207	0	missense_variant_4
1	21,564,139	G	A	1	0.000683	ALP	true	missense_variant	6,162	0	missense_variant_5
1	21,574,964	A	G	1	0.096498	ALP	true	intron_variant	4,661	767	intron_variant_11
1	21,577,713	C	T	1	0.396155	ALP	true	3_prime_UTR_variant	7,410	0	3_prime_UTR_variant_0
1	22,135,638	T	G	0.966948	0.339951	Height	true	intron_variant	5,787	5,787	intron_variant_12
1	22,205,049	G	A	1	0.075492	eBMD	true	intergenic_variant	61,080	61,080	intergenic_variant_3
1	22,502,391	G	T	0.001829	0.000577		false	stop_gained	50,524	0	stop_gained_4
1	23,368,146	G	A	0.001041	0.112406		false	5_prime_UTR_variant	238	0	5_prime_UTR_variant_0
1	23,383,982	C	T	0.961386	0.49952	HDLC	true	3_prime_UTR_variant	14,146	0	3_prime_UTR_variant_1
1	24,046,721	G	C	0.002179	0.197141		false	intron_variant	19,856	9,312	intron_variant_26
1	24,419,566	G	A	0.001816	0.003667		false	missense_variant	3,752	0	missense_variant_33
1	24,604,671	C	T	0.002183	0.451488		false	intron_variant	36,558	933	intron_variant_50
1	24,666,610	A	T	0.001381	0.049002		false	non_coding_transcript_exon_variant	23,051	203	non_coding_transcript_exon_variant_3
1	24,914,625	A	G	1	0.487153	FEV1FVC	true	intron_variant	15,649	4,613	intron_variant_13
1	24,965,206	C	T	1	0.014612	AG,Alb,Balding_Type4	true	upstream_gene_variant	196	196	upstream_gene_variant_0
1	25,243,590	T	C	1	0.250851	MCHC	true	missense_variant	3,854	0	missense_variant_6
1	25,274,256	C	A	0.999999	0.415336	MCV,Plt	true	intron_variant	1,708	1,561	intron_variant_14
1	25,351,114	G	A	1	0.133126	HbA1c	true	intron_variant	12,780	510	intron_variant_15
1	25,551,001	C	T	0.999901	0.035258	Plt	true	intron_variant	7,395	2,919	intron_variant_16
1	26,282,337	G	A	0.003309	0.336213		false	missense_variant	2,215	0	missense_variant_43
1	26,363,251	C	G	0.001092	0.02393		false	intron_variant	3,171	97	intron_variant_19
1	26,411,891	T	C	0.999292	0.044454	Height	true	intron_variant	1,074	309	intron_variant_17
1	26,695,422	G	C	0.999132	0.023537	ALT,SHBG,TG,UA	true	intron_variant	591	591	intron_variant_18
1	26,853,597	A	C	0.915151	0.023681	ALP	true	intron_variant	3,235	127	intron_variant_19
1	26,977,393	C	T	0.991783	0.388714	eBMD	true	intergenic_variant	16,297	16,297	intergenic_variant_4
1	26,978,077	A	G	0.989204	0.225336	ApoA	true	intergenic_variant	15,613	15,613	intergenic_variant_5
1	27,177,582	C	T	0.001217	0.355508		false	downstream_gene_variant	10,601	10,601	downstream_gene_variant_1
1	29,159,616	C	T	0.965148	0.054008	Ht	true	non_coding_transcript_exon_variant	22,264	130	non_coding_transcript_exon_variant_1
1	31,631,145	T	C	0.001648	0.378596		false	intron_variant	11,952	303	intron_variant_27
1	32,231,027	A	C	0.001339	0.063739		false	splice_region_variant	8,594	0	splice_region_variant_1
1	33,024,734	A	G	0.00104	0.010482		false	intron_variant	12,104	167	intron_variant_46
1	33,354,533	C	T	0.008427	0.239779		false	missense_variant	4,648	0	missense_variant_42
1	33,439,629	C	T	0.002974	0.239033		false	intergenic_variant	8,534	8,534	intergenic_variant_33
1	34,841,517	G	A	0.002917	0.22555		false	intron_variant	17,526	8,843	intron_variant_71
1	35,716,212	G	C	0.002474	0.013635		false	missense_variant	2,670	0	missense_variant_3
1	36,367,495	G	C	0.911729	0.001245	Neutro	true	intron_variant	6,155	351	intron_variant_20
1	36,466,446	C	T	0.972249	0.008247	Mono	true	missense_variant	2,062	0	missense_variant_7
1	36,478,315	C	G	1	0.423658	Baso,Neutro,WBC	true	intron_variant	1,202	1,116	intron_variant_21
1	37,525,857	C	T	0.0029	0.468586		false	intergenic_variant	11,091	8,590	intergenic_variant_21
1	37,977,547	C	T	0.001838	0.133496		false	intron_variant	12,473	594	intron_variant_15
1	38,781,838	C	T	0.008852	0.074199		false	intron_variant	77,932	56,358	intron_variant_61
1	39,570,256	G	T	0.968583	0.196829	CRP	true	intron_variant	1,391	254	intron_variant_22
1	39,626,491	G	A	0.001897	0.001561		false	3_prime_UTR_variant	13,150	0	3_prime_UTR_variant_3
1	40,380,309	T	C	0.0013	0.391029		false	intron_variant	5,661	5,601	intron_variant_67
1	40,453,880	A	C	0.00103	0.021679		false	intron_variant	3,404	321	intron_variant_58

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