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Datasets:
pitagoras-alves
/
swissprot_protein_taxon_onehot_encoding

DOI:
License:
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Dataset Preview
The full dataset viewer is not available (click to read why). Only showing a preview of the rows.
The dataset generation failed
Error code:   DatasetGenerationError
Exception:    TypeError
Message:      Couldn't cast array of type
fixed_size_list<element: double>[256]
to
Sequence(feature=Value(dtype='float64', id=None), length=128, id=None)
Traceback:    Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1387, in compute_config_parquet_and_info_response
                  fill_builder_info(builder, hf_endpoint=hf_endpoint, hf_token=hf_token, validate=validate)
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 592, in fill_builder_info
                  num_examples_and_sizes: list[tuple[int, int]] = thread_map(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/tqdm/contrib/concurrent.py", line 69, in thread_map
                  return _executor_map(ThreadPoolExecutor, fn, *iterables, **tqdm_kwargs)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/tqdm/contrib/concurrent.py", line 51, in _executor_map
                  return list(tqdm_class(ex.map(fn, *iterables, chunksize=chunksize), **kwargs))
                File "/src/services/worker/.venv/lib/python3.9/site-packages/tqdm/std.py", line 1169, in __iter__
                  for obj in iterable:
                File "/usr/local/lib/python3.9/concurrent/futures/_base.py", line 609, in result_iterator
                  yield fs.pop().result()
                File "/usr/local/lib/python3.9/concurrent/futures/_base.py", line 446, in result
                  return self.__get_result()
                File "/usr/local/lib/python3.9/concurrent/futures/_base.py", line 391, in __get_result
                  raise self._exception
                File "/usr/local/lib/python3.9/concurrent/futures/thread.py", line 58, in run
                  result = self.fn(*self.args, **self.kwargs)
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 464, in retry_validate_get_num_examples_and_size
                  validate(pf)
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 530, in validate
                  raise TooBigRowGroupsError(
              worker.job_runners.config.parquet_and_info.TooBigRowGroupsError: Parquet file has too big row groups. First row group has 591059809 which exceeds the limit of 300000000
              
              During handling of the above exception, another exception occurred:
              
              Traceback (most recent call last):
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1855, in _prepare_split_single
                  for _, table in generator:
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 687, in wrapped
                  for item in generator(*args, **kwargs):
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/packaged_modules/parquet/parquet.py", line 106, in _generate_tables
                  yield f"{file_idx}_{batch_idx}", self._cast_table(pa_table)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/packaged_modules/parquet/parquet.py", line 73, in _cast_table
                  pa_table = table_cast(pa_table, self.info.features.arrow_schema)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2293, in table_cast
                  return cast_table_to_schema(table, schema)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2246, in cast_table_to_schema
                  arrays = [
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2247, in <listcomp>
                  cast_array_to_feature(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 1796, in wrapper
                  return pa.chunked_array([func(chunk, *args, **kwargs) for chunk in array.chunks])
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 1796, in <listcomp>
                  return pa.chunked_array([func(chunk, *args, **kwargs) for chunk in array.chunks])
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2109, in cast_array_to_feature
                  raise TypeError(f"Couldn't cast array of type\n{_short_str(array.type)}\nto\n{_short_str(feature)}")
              TypeError: Couldn't cast array of type
              fixed_size_list<element: double>[256]
              to
              Sequence(feature=Value(dtype='float64', id=None), length=128, id=None)
              
              The above exception was the direct cause of the following exception:
              
              Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1410, in compute_config_parquet_and_info_response
                  parquet_operations, partial, estimated_dataset_info = stream_convert_to_parquet(
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 989, in stream_convert_to_parquet
                  builder._prepare_split(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1742, in _prepare_split
                  for job_id, done, content in self._prepare_split_single(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1898, in _prepare_split_single
                  raise DatasetGenerationError("An error occurred while generating the dataset") from e
              datasets.exceptions.DatasetGenerationError: An error occurred while generating the dataset

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id
large_string
emb
sequence
P0DPR3
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P83570
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P62968
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P62969
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P62970
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P62971
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P58649
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P58705
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P58706
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P58707
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P80832
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P81817
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P81826
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P81864
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P82070
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P82071
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P82072
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P82073
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P82099
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P82100
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P83073
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P83308
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P84182
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P84573
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P84863
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P84942
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P84948
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P84952
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P85089
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P85406
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P86455
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C0HM49
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P0CU57
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Collection including pitagoras-alves/swissprot_protein_taxon_onehot_encoding