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60f3044c876364a9801923dfbd00360dc8e3f14e
Sylvain Lesage
2021-08-25T09:05:59
docs: ✏️ add install of the letsencrypt certificate
diff --git a/INSTALL.md b/INSTALL.md index d1c1b5d6..95458a5a 100644 --- a/INSTALL.md +++ b/INSTALL.md @@ -40 +40 @@ pm2 restart all -Check if the app is accessible at http://54.158.211.3/healthcheck. +Check if the app is accessible at https://datasets-preview.huggingface.tech/healthcheck. @@ -52,0 +53 @@ ipv4 (public): 54.158.211.3 +domain name: datasets-preview.huggingface.tech @@ -90,0 +92 @@ server { + server_name datasets-preview.huggingface.tech; @@ -112,0 +115,6 @@ sudo systemctl reload nginx +[Install certbot](https://certbot.eff.org/lets-encrypt/ubuntufocal-nginx) with snap to manage the certificate for the domain name. Email: [email protected]. + +```bash +sudo certbot --nginx +``` + @@ -129 +137 @@ PORT=8000 pm2 start --name datasets-preview-backend make -- -C /home/hf/datasets -Check if the app is accessible at http://54.158.211.3/healthcheck. +Check if the app is accessible at https://datasets-preview.huggingface.tech/healthcheck. diff --git a/README.md b/README.md index f08e76dc..665b7b73 100644 --- a/README.md +++ b/README.md @@ -53 +53 @@ make watch -Example: http://54.158.211.3/healthcheck +Example: https://datasets-preview.huggingface.tech/healthcheck @@ -67 +67 @@ Responses: -Example: http://54.158.211.3/info?dataset=glue +Example: https://datasets-preview.huggingface.tech/info?dataset=glue @@ -167 +167 @@ Responses: -Example: http://54.158.211.3/configs?dataset=glue +Example: https://datasets-preview.huggingface.tech/configs?dataset=glue @@ -207 +207 @@ Responses: -Example: http://54.158.211.3/splits?dataset=glue&config=ax +Example: https://datasets-preview.huggingface.tech/splits?dataset=glue&config=ax @@ -236 +236 @@ Responses: -Example: http://54.158.211.3/rows?dataset=glue&config=ax&split=test&rows=2 +Example: https://datasets-preview.huggingface.tech/rows?dataset=glue&config=ax&split=test&rows=2
452a9b41787e31861a010baf3065ac7c4d84a75d
Sylvain Lesage
2021-08-25T08:47:06
fix: 🐛 fix JSON key
diff --git a/benchmark/scripts/get_rows_report.py b/benchmark/scripts/get_rows_report.py index ec81b68e..5094032e 100644 --- a/benchmark/scripts/get_rows_report.py +++ b/benchmark/scripts/get_rows_report.py @@ -25 +25 @@ def get_rows_report(dataset: str, config: str, split: str): - "row_length": len(rows), + "rows_length": len(rows),
37a3f9d39f0449b9c10e2c61ec00f9e400f86fa1
Sylvain Lesage
2021-08-23T14:41:52
fix: 🐛 fix the COMPILE_REPORT target
diff --git a/Makefile b/Makefile index cc097389..b4f68d90 100644 --- a/Makefile +++ b/Makefile @@ -31 +31,3 @@ style: -# The result is benchmark/tmp/report.json +# beware: even if all the data should theoritically be streamed, the ~/.cache/huggingface directory +# will grow about 25G! +# The result is benchmark/tmp/report.json (about 40M) @@ -34 +35,0 @@ benchmark: - diff --git a/benchmark/Makefile b/benchmark/Makefile index 20fd1722..09c97b62 100644 --- a/benchmark/Makefile +++ b/benchmark/Makefile @@ -4,0 +5 @@ tmpDir = ./tmp/ +scriptsDir = ./scripts/ @@ -20 +21 @@ $(report_filename): $(get_info_reports_filename) $(get_configs_reports_filename) - poetry run python $(MERGE_REPORTS) $(get_info_reports_filename) $(get_configs_reports_filename) $(get_splits_reports_filename) $(get_rows_reports_filename) $@ + poetry run python $(COMPILE_REPORT) $(get_info_reports_filename) $(get_configs_reports_filename) $(get_splits_reports_filename) $(get_rows_reports_filename) $@
509994681a0be58182738b1471368773a0cf9340
Sylvain Lesage
2021-08-23T13:19:59
docs: ✏️ add comment about "make benchmark"
diff --git a/Makefile b/Makefile index 1e018e1a..cc097389 100644 --- a/Makefile +++ b/Makefile @@ -28,0 +29,3 @@ style: +# Get a report for every dataset / config / split of the Hub, for every endpoint +# It takes 1 or 2 hours to run. Delete benchmark/tmp to run from scratch. +# The result is benchmark/tmp/report.json
925ed9f6a3454789e21ce7e657f7791411a04159
Sylvain Lesage
2021-08-23T13:14:48
feat: 🎸 shuffle the processes
diff --git a/benchmark/serialized_config_names/Makefile b/benchmark/serialized_config_names/Makefile index 355dccbe..01f1aa29 100644 --- a/benchmark/serialized_config_names/Makefile +++ b/benchmark/serialized_config_names/Makefile @@ -5,0 +6 @@ scriptsDir = ../scripts/ +sorted_serialized_config_names_filename = $(addprefix $(tmpDir), sorted_serialized_config_names.txt) @@ -13,0 +15 @@ all: $(serialized_config_names_filename) +# the names are shuffled to avoid processing configs from the same dataset together wince the data server might ban us @@ -16 +18,2 @@ $(serialized_config_names_filename): $(get_configs_reports_filename) - poetry run python $(GET_SERIALIZED_CONFIG_NAMES) $(get_configs_reports_filename) $(serialized_config_names_filename) + poetry run python $(GET_SERIALIZED_CONFIG_NAMES) $(get_configs_reports_filename) $(sorted_serialized_config_names_filename) + shuf $(sorted_serialized_config_names_filename) -o $(serialized_config_names_filename) @@ -19 +22 @@ clean: - rm -rf $(serialized_config_names_filename) + rm -rf $(serialized_config_names_filename) $(sorted_serialized_config_names_filename) diff --git a/benchmark/serialized_dataset_names/Makefile b/benchmark/serialized_dataset_names/Makefile index f898d3f3..486246be 100644 --- a/benchmark/serialized_dataset_names/Makefile +++ b/benchmark/serialized_dataset_names/Makefile @@ -5,0 +6 @@ scriptsDir = ../scripts/ +sorted_serialized_dataset_names_filename = $(addprefix $(tmpDir), sorted_serialized_dataset_names.txt) @@ -15 +16,2 @@ $(serialized_dataset_names_filename): - poetry run python $(GET_SERIALIZED_DATASET_NAMES) $(serialized_dataset_names_filename) + poetry run python $(GET_SERIALIZED_DATASET_NAMES) $(sorted_serialized_dataset_names_filename) + shuf $(sorted_serialized_dataset_names_filename) -o $(serialized_dataset_names_filename) @@ -18 +20 @@ clean: - rm -rf $(serialized_dataset_names_filename) + rm -rf $(serialized_dataset_names_filename) $(sorted_serialized_dataset_names_filename) diff --git a/benchmark/serialized_split_names/Makefile b/benchmark/serialized_split_names/Makefile index 637db06c..35a13fb1 100644 --- a/benchmark/serialized_split_names/Makefile +++ b/benchmark/serialized_split_names/Makefile @@ -5,0 +6 @@ scriptsDir = ../scripts/ +sorted_serialized_split_names_filename = $(addprefix $(tmpDir), sorted_serialized_split_names.txt) @@ -13,0 +15 @@ all: $(serialized_split_names_filename) +# the names are shuffled to avoid processing splits from the same dataset together wince the data server might ban us @@ -16 +18,2 @@ $(serialized_split_names_filename): $(get_splits_reports_filename) - poetry run python $(GET_SERIALIZED_SPLIT_NAMES) $(get_splits_reports_filename) $(serialized_split_names_filename) + poetry run python $(GET_SERIALIZED_SPLIT_NAMES) $(get_splits_reports_filename) $(sorted_serialized_split_names_filename) + shuf $(sorted_serialized_split_names_filename) -o $(serialized_split_names_filename) @@ -19 +22 @@ clean: - rm -rf $(serialized_split_names_filename) + rm -rf $(serialized_split_names_filename) $(sorted_serialized_split_names_filename)
14361c9188338a86d54fb99cdc1a23dc85f0e2f4
Sylvain Lesage
2021-08-23T12:53:12
feat: 🎸 use all the available CPUs for the benchmark
diff --git a/Makefile b/Makefile index a534ee4b..1e018e1a 100644 --- a/Makefile +++ b/Makefile @@ -2,0 +3,5 @@ PORT ?= 8000 +# monitor the load with htop and adapt the value (load should be a bit less than the number of processors (check with "$ nproc")) +# this will launch as much processes as possible under the limit of load=MAX_LOAD +MAX_LOAD = 7 +PARALLEL = -j -l $(MAX_LOAD) + @@ -25 +30 @@ benchmark: - $(MAKE) -C benchmark + $(MAKE) -C benchmark $(PARALLEL) diff --git a/benchmark/Makefile b/benchmark/Makefile index dda61e59..20fd1722 100644 --- a/benchmark/Makefile +++ b/benchmark/Makefile @@ -0,0 +1 @@ +# Launch with "make -j -l 7" to enable parallel execution @@ -22 +23 @@ $(get_rows_reports_filename): $(serialized_split_names_filename) - $(MAKE) -C get_rows_reports -j 5 + $(MAKE) -C get_rows_reports @@ -28 +29 @@ $(get_splits_reports_filename): $(serialized_config_names_filename) - $(MAKE) -C get_splits_reports -j 5 + $(MAKE) -C get_splits_reports @@ -34 +35 @@ $(get_configs_reports_filename): $(serialized_dataset_names_filename) - $(MAKE) -C get_configs_reports -j 5 + $(MAKE) -C get_configs_reports @@ -37 +38 @@ $(get_info_reports_filename): $(serialized_dataset_names_filename) - $(MAKE) -C get_info_reports -j 5 + $(MAKE) -C get_info_reports
81bf77b6e6e09d32db8e9b2d9916624de98ea9f7
Sylvain Lesage
2021-08-23T12:25:25
style: 💄 apply make style
diff --git a/benchmark/scripts/compile_report.py b/benchmark/scripts/compile_report.py index 9a905655..0530fcf5 100644 --- a/benchmark/scripts/compile_report.py +++ b/benchmark/scripts/compile_report.py @@ -2 +1,0 @@ import json - @@ -3,0 +3 @@ import time + diff --git a/benchmark/scripts/merge_reports.py b/benchmark/scripts/merge_reports.py index 7d9fa53d..317653eb 100644 --- a/benchmark/scripts/merge_reports.py +++ b/benchmark/scripts/merge_reports.py @@ -2 +1,0 @@ import json -import typer @@ -4,0 +4,2 @@ import os +import typer +
26e96261c8d7c616357fff8a1fa58998ce5cb5b7
Sylvain Lesage
2021-08-23T12:21:05
refactor: 💡 compile final report
diff --git a/benchmark/Makefile b/benchmark/Makefile index f29f1073..dda61e59 100644 --- a/benchmark/Makefile +++ b/benchmark/Makefile @@ -14 +14 @@ report_filename = $(addprefix $(tmpDir), report.json) -all: $(report_filename) +COMPILE_REPORT = $(addprefix $(scriptsDir), compile_report.py) @@ -16,4 +16 @@ all: $(report_filename) -$(report_filename): $(get_configs_reports_filename) $(get_info_reports_filename) $(get_splits_reports_filename) $(get_rows_reports_filename) -# TODO -> generate the report from the files -# { info: <$info_filename, configs: <$configs_filename, ... } -# jq -s '.' $^ > $@ +all: $(report_filename) @@ -21,2 +18,2 @@ $(report_filename): $(get_configs_reports_filename) $(get_info_reports_filename) -# TODO: add splits and rows -# we need to generate the list of pairs (dataset, config), and of tuples (dataset, config, split), one per line, in order to allow parallelization +$(report_filename): $(get_info_reports_filename) $(get_configs_reports_filename) $(get_splits_reports_filename) $(get_rows_reports_filename) + poetry run python $(MERGE_REPORTS) $(get_info_reports_filename) $(get_configs_reports_filename) $(get_splits_reports_filename) $(get_rows_reports_filename) $@ diff --git a/benchmark/get_configs_reports/Makefile b/benchmark/get_configs_reports/Makefile index bd74a265..af0a4240 100644 --- a/benchmark/get_configs_reports/Makefile +++ b/benchmark/get_configs_reports/Makefile @@ -12,0 +13 @@ GET_CONFIGS_REPORT = $(addprefix $(scriptsDir), get_configs_report.py) +MERGE_REPORTS = $(addprefix $(scriptsDir), merge_reports.py) @@ -16,0 +18 @@ all: $(merged_report_filename) + @@ -18 +20 @@ $(merged_report_filename): $(individual_report_filenames) - jq -s '.' $^ > $@ + poetry run python $(MERGE_REPORTS) $(serialized_dataset_names_filename) $(reportsDir) $@ diff --git a/benchmark/get_info_reports/Makefile b/benchmark/get_info_reports/Makefile index 3a16b9ee..b250d37f 100644 --- a/benchmark/get_info_reports/Makefile +++ b/benchmark/get_info_reports/Makefile @@ -12,0 +13 @@ GET_INFO_REPORT = $(addprefix $(scriptsDir), get_info_report.py) +MERGE_REPORTS = $(addprefix $(scriptsDir), merge_reports.py) @@ -18 +19 @@ $(merged_report_filename): $(individual_report_filenames) - jq -s '.' $^ > $@ + poetry run python $(MERGE_REPORTS) $(serialized_dataset_names_filename) $(reportsDir) $@ diff --git a/benchmark/get_rows_reports/Makefile b/benchmark/get_rows_reports/Makefile index 8c774825..dbef43ce 100644 --- a/benchmark/get_rows_reports/Makefile +++ b/benchmark/get_rows_reports/Makefile @@ -12,0 +13 @@ GET_ROWS_REPORT = $(addprefix $(scriptsDir), get_rows_report.py) +MERGE_REPORTS = $(addprefix $(scriptsDir), merge_reports.py) @@ -18 +19 @@ $(merged_report_filename): $(individual_report_filenames) - jq -s '.' $^ > $@ + poetry run python $(MERGE_REPORTS) $(serialized_split_names_filename) $(reportsDir) $@ diff --git a/benchmark/get_splits_reports/Makefile b/benchmark/get_splits_reports/Makefile index 729a7745..046e14ac 100644 --- a/benchmark/get_splits_reports/Makefile +++ b/benchmark/get_splits_reports/Makefile @@ -12,0 +13 @@ GET_SPLITS_REPORT = $(addprefix $(scriptsDir), get_splits_report.py) +MERGE_REPORTS = $(addprefix $(scriptsDir), merge_reports.py) @@ -18 +19 @@ $(merged_report_filename): $(individual_report_filenames) - jq -s '.' $^ > $@ + poetry run python $(MERGE_REPORTS) $(serialized_config_names_filename) $(reportsDir) $@ diff --git a/benchmark/scripts/compile_report.py b/benchmark/scripts/compile_report.py new file mode 100644 index 00000000..9a905655 --- /dev/null +++ b/benchmark/scripts/compile_report.py @@ -0,0 +1,35 @@ +import json + +import time +import typer + + +def main( + get_info_reports_filename: str, + get_configs_reports_filename: str, + get_splits_reports_filename: str, + get_rows_reports_filename: str, + output: str, +): + with open(get_info_reports_filename) as f: + get_info_reports = json.load(f) + with open(get_configs_reports_filename) as f: + get_configs_reports = json.load(f) + with open(get_splits_reports_filename) as f: + get_splits_reports = json.load(f) + with open(get_rows_reports_filename) as f: + get_rows_reports = json.load(f) + time_string = time.strftime("%Y%m%d-%H%M%S") + report = { + "info_reports": get_info_reports, + "configs_reports": get_configs_reports, + "splits_reports": get_splits_reports, + "rows_reports": get_rows_reports, + "created_at": time_string, + } + with open(output, "w") as f: + json.dump(report, f) + + +if __name__ == "__main__": + typer.run(main) diff --git a/benchmark/scripts/merge_reports.py b/benchmark/scripts/merge_reports.py new file mode 100644 index 00000000..7d9fa53d --- /dev/null +++ b/benchmark/scripts/merge_reports.py @@ -0,0 +1,23 @@ +import json +import typer +import os + + +def main( + basenames_filename: str, + reports_dir: str, + output: str, +): + reports = [] + with open(basenames_filename) as f: + basenames = f.read().splitlines() + for basename in basenames: + filename = os.path.join(reports_dir, basename + ".json") + with open(filename) as f2: + reports.append(json.load(f2)) + with open(output, "w") as f: + json.dump(reports, f) + + +if __name__ == "__main__": + typer.run(main) diff --git a/benchmark/scripts/serialize.py b/benchmark/scripts/serialize.py index 56fef386..450d040b 100644 --- a/benchmark/scripts/serialize.py +++ b/benchmark/scripts/serialize.py @@ -3 +3,4 @@ from typing import Tuple, Union -SLASH_SEPARATOR = "___SLASH___" +SLASH = "___SLASH___" +SPACE = "___SPACE___" +PAR_OPEN = "___PAR_OPEN___" +PAR_CLOSE = "___PAR_CLOSE___" @@ -10 +13 @@ def serialize_dataset_name(dataset: str) -> str: - return dataset.replace("/", SLASH_SEPARATOR) + return dataset.replace("/", SLASH) @@ -14 +17 @@ def deserialize_dataset_name(serialized_dataset: str) -> str: - return serialized_dataset.replace(SLASH_SEPARATOR, "/") + return serialized_dataset.replace(SLASH, "/") @@ -19 +22,3 @@ def serialize_config_name(dataset: str, config: Union[str, None]) -> str: - return serialize_dataset_name(dataset) + CONFIG_SEPARATOR + c + # due to config named "(China)", "bbc hindi nli" + safe_config = c.replace("(", PAR_OPEN).replace(")", PAR_CLOSE).replace(" ", SPACE) + return serialize_dataset_name(dataset) + CONFIG_SEPARATOR + safe_config @@ -24 +29,2 @@ def deserialize_config_name(serialized_config: str) -> Tuple[str, Union[str, Non - config = None if safe_config == CONFIG_NONE else safe_config + c = safe_config.replace(PAR_OPEN, "(").replace(PAR_CLOSE, ")").replace(SPACE, " ") + config = None if c == CONFIG_NONE else c @@ -30 +36,2 @@ def serialize_split_name(dataset: str, config: Union[str, None], split: str) -> - return serialize_config_name(dataset, config) + SPLIT_SEPARATOR + split + safe_split = split + return serialize_config_name(dataset, config) + SPLIT_SEPARATOR + safe_split @@ -34 +41,2 @@ def deserialize_split_name(serialized_split: str) -> Tuple[str, Union[str, None] - serialized_config, _, split = serialized_split.partition(SPLIT_SEPARATOR) + serialized_config, _, safe_split = serialized_split.partition(SPLIT_SEPARATOR) + split = safe_split.replace(PAR_OPEN, "(").replace(PAR_CLOSE, ")")
f19a8386b8fa928edbf44ce19ac3b31d4f6eeaa3
Sylvain Lesage
2021-08-23T09:34:50
refactor: 💡 add get rows report to makefiles
diff --git a/benchmark/Makefile b/benchmark/Makefile index 4163f0a1..f29f1073 100644 --- a/benchmark/Makefile +++ b/benchmark/Makefile @@ -10,0 +11 @@ get_splits_reports_filename = $(addprefix $(tmpDir), get_splits_reports.json) +get_rows_reports_filename = $(addprefix $(tmpDir), get_rows_reports.json) @@ -12,0 +14 @@ report_filename = $(addprefix $(tmpDir), report.json) +all: $(report_filename) @@ -14 +16 @@ report_filename = $(addprefix $(tmpDir), report.json) -all: $(get_configs_reports_filename) $(get_info_reports_filename) $(get_splits_reports_filename) $(serialized_split_names_filename) +$(report_filename): $(get_configs_reports_filename) $(get_info_reports_filename) $(get_splits_reports_filename) $(get_rows_reports_filename) @@ -21,0 +24,3 @@ all: $(get_configs_reports_filename) $(get_info_reports_filename) $(get_splits_r +$(get_rows_reports_filename): $(serialized_split_names_filename) + $(MAKE) -C get_rows_reports -j 5 + @@ -40,0 +46 @@ clean: + $(MAKE) -C get_rows_reports/ clean diff --git a/benchmark/get_configs_reports/Makefile b/benchmark/get_configs_reports/Makefile index e2ccd004..bd74a265 100644 --- a/benchmark/get_configs_reports/Makefile +++ b/benchmark/get_configs_reports/Makefile @@ -4 +4 @@ tmpDir = ../tmp/ -configsDir = $(addprefix $(tmpDir), get_configs_reports/) +reportsDir = $(addprefix $(tmpDir), get_configs_reports/) @@ -9 +9 @@ serialized_dataset_names = $(file < $(serialized_dataset_names_filename)) -individual_report_filenames = $(addprefix $(configsDir), $(addsuffix .json, $(serialized_dataset_names))) +individual_report_filenames = $(addprefix $(reportsDir), $(addsuffix .json, $(serialized_dataset_names))) @@ -23 +23 @@ $(merged_report_filename): $(individual_report_filenames) - @mkdir -p $(configsDir) + @mkdir -p $(reportsDir) @@ -28 +28 @@ clean: - rm -rf $(configsDir) + rm -rf $(reportsDir) diff --git a/benchmark/get_info_reports/Makefile b/benchmark/get_info_reports/Makefile index b673029e..3a16b9ee 100644 --- a/benchmark/get_info_reports/Makefile +++ b/benchmark/get_info_reports/Makefile @@ -4 +4 @@ tmpDir = ../tmp/ -infoDir = $(addprefix $(tmpDir), get_info_reports/) +reportsDir = $(addprefix $(tmpDir), get_info_reports/) @@ -9 +9 @@ serialized_dataset_names = $(file < $(serialized_dataset_names_filename)) -individual_report_filenames = $(addprefix $(infoDir), $(addsuffix .json, $(serialized_dataset_names))) +individual_report_filenames = $(addprefix $(reportsDir), $(addsuffix .json, $(serialized_dataset_names))) @@ -23 +23 @@ $(merged_report_filename): $(individual_report_filenames) - @mkdir -p $(infoDir) + @mkdir -p $(reportsDir) @@ -28 +28 @@ clean: - rm -rf $(infoDir) + rm -rf $(reportsDir) diff --git a/benchmark/get_rows_reports/Makefile b/benchmark/get_rows_reports/Makefile new file mode 100644 index 00000000..8c774825 --- /dev/null +++ b/benchmark/get_rows_reports/Makefile @@ -0,0 +1,28 @@ +.PHONY: clean all + +tmpDir = ../tmp/ +reportsDir = $(addprefix $(tmpDir), get_rows_reports/) +scriptsDir = ../scripts/ + +serialized_split_names_filename = $(addprefix $(tmpDir), serialized_split_names.txt) +serialized_split_names = $(file < $(serialized_split_names_filename)) +individual_report_filenames = $(addprefix $(reportsDir), $(addsuffix .json, $(serialized_split_names))) +merged_report_filename = $(addprefix $(tmpDir), get_rows_reports.json) + +GET_ROWS_REPORT = $(addprefix $(scriptsDir), get_rows_report.py) + +all: $(merged_report_filename) + +# merge all the reports in one JSON +$(merged_report_filename): $(individual_report_filenames) + jq -s '.' $^ > $@ + +# generate a report for every split (get_rows_report.py) -> list of rows, and potential exceptions +# this is $(individual_report_filenames) +../tmp/get_rows_reports/%.json: + @mkdir -p $(reportsDir) + poetry run python $(GET_ROWS_REPORT) $* $@ + +clean: + rm -rf $(merged_report_filename) + rm -rf $(reportsDir) diff --git a/benchmark/get_splits_reports/Makefile b/benchmark/get_splits_reports/Makefile index 127c7644..729a7745 100644 --- a/benchmark/get_splits_reports/Makefile +++ b/benchmark/get_splits_reports/Makefile @@ -4 +4 @@ tmpDir = ../tmp/ -splitsDir = $(addprefix $(tmpDir), get_splits_reports/) +reportsDir = $(addprefix $(tmpDir), get_splits_reports/) @@ -9 +9 @@ serialized_config_names = $(file < $(serialized_config_names_filename)) -individual_report_filenames = $(addprefix $(splitsDir), $(addsuffix .json, $(serialized_config_names))) +individual_report_filenames = $(addprefix $(reportsDir), $(addsuffix .json, $(serialized_config_names))) @@ -23 +23 @@ $(merged_report_filename): $(individual_report_filenames) - @mkdir -p $(splitsDir) + @mkdir -p $(reportsDir) @@ -28 +28 @@ clean: - rm -rf $(splitsDir) + rm -rf $(reportsDir) diff --git a/benchmark/scripts/get_rows_report.py b/benchmark/scripts/get_rows_report.py new file mode 100644 index 00000000..ec81b68e --- /dev/null +++ b/benchmark/scripts/get_rows_report.py @@ -0,0 +1,55 @@ +import json +import logging +import time + +import typer +from datasets import disable_progress_bar +from serialize import deserialize_split_name + +from datasets_preview_backend.queries.rows import extract_rows + +# remove any logs +logging.disable(logging.CRITICAL) +disable_progress_bar() + + +def get_rows_report(dataset: str, config: str, split: str): + num_rows = 10 + try: + t = time.process_time() + rows = extract_rows(dataset, config, split, num_rows)["rows"] + return { + "dataset": dataset, + "config": config, + "split": split, + "row_length": len(rows), + "success": True, + "exception": None, + "message": None, + "cause": None, + "cause_message": None, + "elapsed_seconds": time.process_time() - t, + } + except Exception as err: + return { + "dataset": dataset, + "config": config, + "split": split, + "success": False, + "exception": type(err).__name__, + "message": str(err), + "cause": type(err.__cause__).__name__, + "cause_message": str(err.__cause__), + "elapsed_seconds": time.process_time() - t, + } + + +def main(serialized_split_name: str, filename: str): + dataset, config, split = deserialize_split_name(serialized_split_name) + report = get_rows_report(dataset, config, split) + with open(filename, "w") as f: + json.dump(report, f) + + +if __name__ == "__main__": + typer.run(main) diff --git a/benchmark/scripts/get_splits_report.py b/benchmark/scripts/get_splits_report.py index 5138a143..3852fab7 100644 --- a/benchmark/scripts/get_splits_report.py +++ b/benchmark/scripts/get_splits_report.py @@ -47 +47 @@ def main(serialized_config_name: str, filename: str): - splits = get_splits_report(dataset, config) + report = get_splits_report(dataset, config) @@ -49 +49 @@ def main(serialized_config_name: str, filename: str): - json.dump(splits, f) + json.dump(report, f)
42fa524344f93cc8a1f1580ebcd4cd437c26ca56
Sylvain Lesage
2021-08-23T09:24:52
refactor: 💡 add list of serialized split names
diff --git a/benchmark/Makefile b/benchmark/Makefile index 4b214fd5..4163f0a1 100644 --- a/benchmark/Makefile +++ b/benchmark/Makefile @@ -6,0 +7 @@ serialized_config_names_filename = $(addprefix $(tmpDir), serialized_config_name +serialized_split_names_filename = $(addprefix $(tmpDir), serialized_split_names.txt) @@ -8,0 +10 @@ get_configs_reports_filename = $(addprefix $(tmpDir), get_configs_reports.json) +get_splits_reports_filename = $(addprefix $(tmpDir), get_splits_reports.json) @@ -12 +14 @@ report_filename = $(addprefix $(tmpDir), report.json) -all: $(get_configs_reports_filename) $(get_info_reports_filename) $(get_splits_reports_filename) +all: $(get_configs_reports_filename) $(get_info_reports_filename) $(get_splits_reports_filename) $(serialized_split_names_filename) @@ -19,0 +22,6 @@ all: $(get_configs_reports_filename) $(get_info_reports_filename) $(get_splits_r +$(serialized_split_names_filename): $(get_splits_reports_filename) + $(MAKE) -C serialized_split_names + +$(get_splits_reports_filename): $(serialized_config_names_filename) + $(MAKE) -C get_splits_reports -j 5 + @@ -32,0 +41,2 @@ clean: + $(MAKE) -C serialized_split_names/ clean + $(MAKE) -C get_splits_reports/ clean diff --git a/benchmark/scripts/get_serialized_dataset_names.py b/benchmark/scripts/get_serialized_dataset_names.py index 399a3b4c..405ae284 100644 --- a/benchmark/scripts/get_serialized_dataset_names.py +++ b/benchmark/scripts/get_serialized_dataset_names.py @@ -9 +8,0 @@ from serialize import serialize_dataset_name - diff --git a/benchmark/scripts/get_serialized_split_names.py b/benchmark/scripts/get_serialized_split_names.py new file mode 100644 index 00000000..869b1649 --- /dev/null +++ b/benchmark/scripts/get_serialized_split_names.py @@ -0,0 +1,25 @@ +import json + +import typer +from serialize import serialize_split_name + + +def main(get_splits_reports_filename: str, output: str): + with open(get_splits_reports_filename) as f: + get_splits_reports = json.load(f) + + # replace '/' in namespaced dataset names + serialized_split_names = [] + for get_splits_report in get_splits_reports: + dataset = get_splits_report["dataset"] + config = get_splits_report["config"] + for split in get_splits_report["splits"]: + serialized_split_names.append(serialize_split_name(dataset, config, split)) + + with open(output, "w") as f: + for serialized_split_name in serialized_split_names: + f.write("%s\n" % serialized_split_name) + + +if __name__ == "__main__": + typer.run(main) diff --git a/benchmark/scripts/serialize.py b/benchmark/scripts/serialize.py index f9a3cfc5..56fef386 100644 --- a/benchmark/scripts/serialize.py +++ b/benchmark/scripts/serialize.py @@ -5,0 +6 @@ CONFIG_NONE = "___NONE_CONFIG___" +SPLIT_SEPARATOR = "___SPLIT___" @@ -25,0 +27,10 @@ def deserialize_config_name(serialized_config: str) -> Tuple[str, Union[str, Non + + +def serialize_split_name(dataset: str, config: Union[str, None], split: str) -> str: + return serialize_config_name(dataset, config) + SPLIT_SEPARATOR + split + + +def deserialize_split_name(serialized_split: str) -> Tuple[str, Union[str, None], str]: + serialized_config, _, split = serialized_split.partition(SPLIT_SEPARATOR) + dataset, config = deserialize_config_name(serialized_config) + return dataset, config, split diff --git a/benchmark/serialized_config_names/Makefile b/benchmark/serialized_config_names/Makefile index 7797925d..355dccbe 100644 --- a/benchmark/serialized_config_names/Makefile +++ b/benchmark/serialized_config_names/Makefile @@ -13 +13 @@ all: $(serialized_config_names_filename) -# get the list of serialized dataset names (with '/' replaced with "___SLASH___") +# get the list of serialized config names diff --git a/benchmark/serialized_split_names/Makefile b/benchmark/serialized_split_names/Makefile new file mode 100644 index 00000000..637db06c --- /dev/null +++ b/benchmark/serialized_split_names/Makefile @@ -0,0 +1,19 @@ +.PHONY: clean all + +tmpDir = ../tmp/ +scriptsDir = ../scripts/ + +serialized_split_names_filename = $(addprefix $(tmpDir), serialized_split_names.txt) +get_splits_reports_filename = $(addprefix $(tmpDir), get_splits_reports.json) + +GET_SERIALIZED_SPLIT_NAMES = $(addprefix $(scriptsDir), get_serialized_split_names.py) + +all: $(serialized_split_names_filename) + +# get the list of serialized split names +$(serialized_split_names_filename): $(get_splits_reports_filename) + @mkdir -p $(tmpDir) + poetry run python $(GET_SERIALIZED_SPLIT_NAMES) $(get_splits_reports_filename) $(serialized_split_names_filename) + +clean: + rm -rf $(serialized_split_names_filename)
94d257938a719c991e4d974828eaa3bf9d0b5d13
Sylvain Lesage
2021-08-23T09:14:06
refactor: 💡 add get_splits reports in makefiles
diff --git a/benchmark/Makefile b/benchmark/Makefile index b534ccf0..4b214fd5 100644 --- a/benchmark/Makefile +++ b/benchmark/Makefile @@ -11 +10,0 @@ report_filename = $(addprefix $(tmpDir), report.json) -all: $(report_filename) $(serialized_config_names_filename) @@ -13 +12 @@ all: $(report_filename) $(serialized_config_names_filename) -$(report_filename): $(get_configs_report_filename) $(get_info_report_filename) +all: $(get_configs_reports_filename) $(get_info_reports_filename) $(get_splits_reports_filename) diff --git a/benchmark/get_splits_reports/Makefile b/benchmark/get_splits_reports/Makefile new file mode 100644 index 00000000..127c7644 --- /dev/null +++ b/benchmark/get_splits_reports/Makefile @@ -0,0 +1,28 @@ +.PHONY: clean all + +tmpDir = ../tmp/ +splitsDir = $(addprefix $(tmpDir), get_splits_reports/) +scriptsDir = ../scripts/ + +serialized_config_names_filename = $(addprefix $(tmpDir), serialized_config_names.txt) +serialized_config_names = $(file < $(serialized_config_names_filename)) +individual_report_filenames = $(addprefix $(splitsDir), $(addsuffix .json, $(serialized_config_names))) +merged_report_filename = $(addprefix $(tmpDir), get_splits_reports.json) + +GET_SPLITS_REPORT = $(addprefix $(scriptsDir), get_splits_report.py) + +all: $(merged_report_filename) + +# merge all the reports in one JSON +$(merged_report_filename): $(individual_report_filenames) + jq -s '.' $^ > $@ + +# generate a report for every config (get_splits_report.py) -> list of splits, and potential exceptions +# this is $(individual_report_filenames) +../tmp/get_splits_reports/%.json: + @mkdir -p $(splitsDir) + poetry run python $(GET_SPLITS_REPORT) $* $@ + +clean: + rm -rf $(merged_report_filename) + rm -rf $(splitsDir) diff --git a/benchmark/scripts/get_configs_report.py b/benchmark/scripts/get_configs_report.py index 7c04ff79..3dace60e 100644 --- a/benchmark/scripts/get_configs_report.py +++ b/benchmark/scripts/get_configs_report.py @@ -44 +44 @@ def main(serialized_dataset_name: str, filename: str): - info = get_configs_report(deserialize_dataset_name(serialized_dataset_name)) + report = get_configs_report(deserialize_dataset_name(serialized_dataset_name)) @@ -46 +46 @@ def main(serialized_dataset_name: str, filename: str): - json.dump(info, f) + json.dump(report, f) diff --git a/benchmark/scripts/get_info_report.py b/benchmark/scripts/get_info_report.py index 52fc263d..7ddedf52 100644 --- a/benchmark/scripts/get_info_report.py +++ b/benchmark/scripts/get_info_report.py @@ -6,0 +7 @@ from datasets import disable_progress_bar +from serialize import deserialize_dataset_name @@ -42,10 +43,2 @@ def get_info_report(dataset: str): -def to_safe(str): - return str.replace("/", "___SLASH___") - - -def to_unsafe(str): - return str.replace("___SLASH___", "/") - - -def main(safe_dataset: str, filename: str): - info = get_info_report(to_unsafe(safe_dataset)) +def main(serialized_dataset_name: str, filename: str): + report = get_info_report(deserialize_dataset_name(serialized_dataset_name)) @@ -53 +46 @@ def main(safe_dataset: str, filename: str): - json.dump(info, f) + json.dump(report, f) diff --git a/benchmark/scripts/get_splits_report.py b/benchmark/scripts/get_splits_report.py new file mode 100644 index 00000000..5138a143 --- /dev/null +++ b/benchmark/scripts/get_splits_report.py @@ -0,0 +1,53 @@ +import json +import logging +import time + +import typer +from datasets import disable_progress_bar +from serialize import deserialize_config_name + +from datasets_preview_backend.queries.splits import get_splits + +# remove any logs +logging.disable(logging.CRITICAL) +disable_progress_bar() + + +def get_splits_report(dataset: str, config: str): + try: + t = time.process_time() + splits = get_splits(dataset, config)["splits"] + return { + "dataset": dataset, + "config": config, + "splits": list(splits), + "success": True, + "exception": None, + "message": None, + "cause": None, + "cause_message": None, + "elapsed_seconds": time.process_time() - t, + } + except Exception as err: + return { + "dataset": dataset, + "config": config, + "splits": [], + "success": False, + "exception": type(err).__name__, + "message": str(err), + "cause": type(err.__cause__).__name__, + "cause_message": str(err.__cause__), + "elapsed_seconds": time.process_time() - t, + } + + +def main(serialized_config_name: str, filename: str): + dataset, config = deserialize_config_name(serialized_config_name) + splits = get_splits_report(dataset, config) + with open(filename, "w") as f: + json.dump(splits, f) + + +if __name__ == "__main__": + typer.run(main) diff --git a/benchmark/scripts/serialize.py b/benchmark/scripts/serialize.py index 5af10346..f9a3cfc5 100644 --- a/benchmark/scripts/serialize.py +++ b/benchmark/scripts/serialize.py @@ -1 +1 @@ -from typing import Union +from typing import Tuple, Union @@ -12,2 +12,2 @@ def serialize_dataset_name(dataset: str) -> str: -def deserialize_dataset_name(dataset: str) -> str: - return dataset.replace(SLASH_SEPARATOR, "/") +def deserialize_dataset_name(serialized_dataset: str) -> str: + return serialized_dataset.replace(SLASH_SEPARATOR, "/") @@ -18,0 +19,7 @@ def serialize_config_name(dataset: str, config: Union[str, None]) -> str: + + +def deserialize_config_name(serialized_config: str) -> Tuple[str, Union[str, None]]: + serialized_dataset, _, safe_config = serialized_config.partition(CONFIG_SEPARATOR) + config = None if safe_config == CONFIG_NONE else safe_config + dataset = deserialize_dataset_name(serialized_dataset) + return dataset, config
0f0d096a807e5ea6006511741fe91163eb906177
Sylvain Lesage
2021-08-23T08:49:33
refactor: 💡 replace test_datasets.py with makefiles
diff --git a/.gitignore b/.gitignore index e2cdb79d..98a3b28d 100644 --- a/.gitignore +++ b/.gitignore @@ -10,0 +11,2 @@ poetry.toml + +benchmark/tmp/ diff --git a/Makefile b/Makefile index f8ffe6ab..a534ee4b 100644 --- a/Makefile +++ b/Makefile @@ -25 +25,2 @@ benchmark: - poetry run python benchmark/test_datasets.py + $(MAKE) -C benchmark + diff --git a/benchmark/Makefile b/benchmark/Makefile new file mode 100644 index 00000000..b534ccf0 --- /dev/null +++ b/benchmark/Makefile @@ -0,0 +1,37 @@ +.PHONY: clean all + +tmpDir = ./tmp/ + +serialized_dataset_names_filename = $(addprefix $(tmpDir), serialized_dataset_names.txt) +serialized_config_names_filename = $(addprefix $(tmpDir), serialized_config_names.txt) +get_info_reports_filename = $(addprefix $(tmpDir), get_info_reports.json) +get_configs_reports_filename = $(addprefix $(tmpDir), get_configs_reports.json) +report_filename = $(addprefix $(tmpDir), report.json) + +all: $(report_filename) $(serialized_config_names_filename) + +$(report_filename): $(get_configs_report_filename) $(get_info_report_filename) +# TODO -> generate the report from the files +# { info: <$info_filename, configs: <$configs_filename, ... } +# jq -s '.' $^ > $@ + +# TODO: add splits and rows +# we need to generate the list of pairs (dataset, config), and of tuples (dataset, config, split), one per line, in order to allow parallelization + +$(serialized_config_names_filename): $(get_configs_reports_filename) + $(MAKE) -C serialized_config_names + +$(get_configs_reports_filename): $(serialized_dataset_names_filename) + $(MAKE) -C get_configs_reports -j 5 + +$(get_info_reports_filename): $(serialized_dataset_names_filename) + $(MAKE) -C get_info_reports -j 5 + +$(serialized_dataset_names_filename): + $(MAKE) -C serialized_dataset_names + +clean: + $(MAKE) -C serialized_config_names/ clean + $(MAKE) -C get_configs_reports/ clean + $(MAKE) -C get_info_reports/ clean + $(MAKE) -C serialized_dataset_names/ clean diff --git a/benchmark/test_datasets.py b/benchmark/deprecated/test_datasets.py similarity index 100% rename from benchmark/test_datasets.py rename to benchmark/deprecated/test_datasets.py diff --git a/benchmark/get_configs_reports/Makefile b/benchmark/get_configs_reports/Makefile new file mode 100644 index 00000000..e2ccd004 --- /dev/null +++ b/benchmark/get_configs_reports/Makefile @@ -0,0 +1,28 @@ +.PHONY: clean all + +tmpDir = ../tmp/ +configsDir = $(addprefix $(tmpDir), get_configs_reports/) +scriptsDir = ../scripts/ + +serialized_dataset_names_filename = $(addprefix $(tmpDir), serialized_dataset_names.txt) +serialized_dataset_names = $(file < $(serialized_dataset_names_filename)) +individual_report_filenames = $(addprefix $(configsDir), $(addsuffix .json, $(serialized_dataset_names))) +merged_report_filename = $(addprefix $(tmpDir), get_configs_reports.json) + +GET_CONFIGS_REPORT = $(addprefix $(scriptsDir), get_configs_report.py) + +all: $(merged_report_filename) + +# merge all the reports in one JSON +$(merged_report_filename): $(individual_report_filenames) + jq -s '.' $^ > $@ + +# generate a report for every dataset (get_configs.py) -> list of configs, and potential exceptions +# this is $(individual_report_filenames) +../tmp/get_configs_reports/%.json: + @mkdir -p $(configsDir) + poetry run python $(GET_CONFIGS_REPORT) $* $@ + +clean: + rm -rf $(merged_report_filename) + rm -rf $(configsDir) diff --git a/benchmark/get_info_reports/Makefile b/benchmark/get_info_reports/Makefile new file mode 100644 index 00000000..b673029e --- /dev/null +++ b/benchmark/get_info_reports/Makefile @@ -0,0 +1,28 @@ +.PHONY: clean all + +tmpDir = ../tmp/ +infoDir = $(addprefix $(tmpDir), get_info_reports/) +scriptsDir = ../scripts/ + +serialized_dataset_names_filename = $(addprefix $(tmpDir), serialized_dataset_names.txt) +serialized_dataset_names = $(file < $(serialized_dataset_names_filename)) +individual_report_filenames = $(addprefix $(infoDir), $(addsuffix .json, $(serialized_dataset_names))) +merged_report_filename = $(addprefix $(tmpDir), get_info_reports.json) + +GET_INFO_REPORT = $(addprefix $(scriptsDir), get_info_report.py) + +all: $(merged_report_filename) + +# merge all the reports in one JSON +$(merged_report_filename): $(individual_report_filenames) + jq -s '.' $^ > $@ + +# generate a report for every dataset (get_info.py) -> list of info, and potential exceptions +# this is $(individual_report_filenames) +../tmp/get_info_reports/%.json: + @mkdir -p $(infoDir) + poetry run python $(GET_INFO_REPORT) $* $@ + +clean: + rm -rf $(merged_report_filename) + rm -rf $(infoDir) diff --git a/benchmark/scripts/get_configs_report.py b/benchmark/scripts/get_configs_report.py new file mode 100644 index 00000000..7c04ff79 --- /dev/null +++ b/benchmark/scripts/get_configs_report.py @@ -0,0 +1,50 @@ +import json +import logging +import time + +import typer +from datasets import disable_progress_bar +from serialize import deserialize_dataset_name + +from datasets_preview_backend.queries.configs import get_configs + +# remove any logs +logging.disable(logging.CRITICAL) +disable_progress_bar() + + +def get_configs_report(dataset: str): + try: + t = time.process_time() + configs = get_configs(dataset)["configs"] + return { + "dataset": dataset, + "configs": list(configs), + "success": True, + "exception": None, + "message": None, + "cause": None, + "cause_message": None, + "elapsed_seconds": time.process_time() - t, + } + except Exception as err: + return { + "dataset": dataset, + "configs": [], + "success": False, + "exception": type(err).__name__, + "message": str(err), + "cause": type(err.__cause__).__name__, + "cause_message": str(err.__cause__), + "elapsed_seconds": time.process_time() - t, + } + + +def main(serialized_dataset_name: str, filename: str): + info = get_configs_report(deserialize_dataset_name(serialized_dataset_name)) + with open(filename, "w") as f: + json.dump(info, f) + + +if __name__ == "__main__": + typer.run(main) diff --git a/benchmark/scripts/get_info_report.py b/benchmark/scripts/get_info_report.py new file mode 100644 index 00000000..52fc263d --- /dev/null +++ b/benchmark/scripts/get_info_report.py @@ -0,0 +1,57 @@ +import json +import logging +import time + +import typer +from datasets import disable_progress_bar + +from datasets_preview_backend.queries.info import get_info + +# remove any logs +logging.disable(logging.CRITICAL) +disable_progress_bar() + + +def get_info_report(dataset: str): + try: + t = time.process_time() + info = get_info(dataset)["info"] + return { + "dataset": dataset, + "info": info, + "success": True, + "exception": None, + "message": None, + "cause": None, + "cause_message": None, + "elapsed_seconds": time.process_time() - t, + } + except Exception as err: + return { + "dataset": dataset, + "info": None, + "success": False, + "exception": type(err).__name__, + "message": str(err), + "cause": type(err.__cause__).__name__, + "cause_message": str(err.__cause__), + "elapsed_seconds": time.process_time() - t, + } + + +def to_safe(str): + return str.replace("/", "___SLASH___") + + +def to_unsafe(str): + return str.replace("___SLASH___", "/") + + +def main(safe_dataset: str, filename: str): + info = get_info_report(to_unsafe(safe_dataset)) + with open(filename, "w") as f: + json.dump(info, f) + + +if __name__ == "__main__": + typer.run(main) diff --git a/benchmark/scripts/get_serialized_config_names.py b/benchmark/scripts/get_serialized_config_names.py new file mode 100644 index 00000000..612a62d3 --- /dev/null +++ b/benchmark/scripts/get_serialized_config_names.py @@ -0,0 +1,24 @@ +import json + +import typer +from serialize import serialize_config_name + + +def main(get_configs_reports_filename: str, output: str): + with open(get_configs_reports_filename) as f: + get_configs_reports = json.load(f) + + # replace '/' in namespaced dataset names + serialized_config_names = [] + for get_configs_report in get_configs_reports: + dataset = get_configs_report["dataset"] + for config in get_configs_report["configs"]: + serialized_config_names.append(serialize_config_name(dataset, config)) + + with open(output, "w") as f: + for serialized_config_name in serialized_config_names: + f.write("%s\n" % serialized_config_name) + + +if __name__ == "__main__": + typer.run(main) diff --git a/benchmark/scripts/get_serialized_dataset_names.py b/benchmark/scripts/get_serialized_dataset_names.py new file mode 100644 index 00000000..399a3b4c --- /dev/null +++ b/benchmark/scripts/get_serialized_dataset_names.py @@ -0,0 +1,32 @@ +import typer +from datasets import list_datasets +from serialize import serialize_dataset_name + +# import os +# import shutil + + + +def main(filename: str): + dataset_names = list_datasets(with_community_datasets=True) + # replace '/' in namespaced dataset names + serialized_dataset_names = [ + serialize_dataset_name(dataset_name) for dataset_name in dataset_names + ] + # # current subdirectories + # dir_list = next(os.walk(path))[1] + # # to add + # for dataset in safe_datasets: + # if dataset not in dir_list: + # os.mkdir(os.path.join(path, dataset)) + # # to remove + # for dataset in dir_list: + # if dataset not in safe_datasets: + # shutil.rmtree(os.path.join(path, dataset)) + with open(filename, "w") as f: + for serialized_dataset_name in serialized_dataset_names: + f.write("%s\n" % serialized_dataset_name) + + +if __name__ == "__main__": + typer.run(main) diff --git a/benchmark/scripts/serialize.py b/benchmark/scripts/serialize.py new file mode 100644 index 00000000..5af10346 --- /dev/null +++ b/benchmark/scripts/serialize.py @@ -0,0 +1,18 @@ +from typing import Union + +SLASH_SEPARATOR = "___SLASH___" +CONFIG_SEPARATOR = "___CONFIG___" +CONFIG_NONE = "___NONE_CONFIG___" + + +def serialize_dataset_name(dataset: str) -> str: + return dataset.replace("/", SLASH_SEPARATOR) + + +def deserialize_dataset_name(dataset: str) -> str: + return dataset.replace(SLASH_SEPARATOR, "/") + + +def serialize_config_name(dataset: str, config: Union[str, None]) -> str: + c = CONFIG_NONE if config is None else config + return serialize_dataset_name(dataset) + CONFIG_SEPARATOR + c diff --git a/benchmark/serialized_config_names/Makefile b/benchmark/serialized_config_names/Makefile new file mode 100644 index 00000000..7797925d --- /dev/null +++ b/benchmark/serialized_config_names/Makefile @@ -0,0 +1,19 @@ +.PHONY: clean all + +tmpDir = ../tmp/ +scriptsDir = ../scripts/ + +serialized_config_names_filename = $(addprefix $(tmpDir), serialized_config_names.txt) +get_configs_reports_filename = $(addprefix $(tmpDir), get_configs_reports.json) + +GET_SERIALIZED_CONFIG_NAMES = $(addprefix $(scriptsDir), get_serialized_config_names.py) + +all: $(serialized_config_names_filename) + +# get the list of serialized dataset names (with '/' replaced with "___SLASH___") +$(serialized_config_names_filename): $(get_configs_reports_filename) + @mkdir -p $(tmpDir) + poetry run python $(GET_SERIALIZED_CONFIG_NAMES) $(get_configs_reports_filename) $(serialized_config_names_filename) + +clean: + rm -rf $(serialized_config_names_filename) diff --git a/benchmark/serialized_dataset_names/Makefile b/benchmark/serialized_dataset_names/Makefile new file mode 100644 index 00000000..f898d3f3 --- /dev/null +++ b/benchmark/serialized_dataset_names/Makefile @@ -0,0 +1,18 @@ +.PHONY: clean all + +tmpDir = ../tmp/ +scriptsDir = ../scripts/ + +serialized_dataset_names_filename = $(addprefix $(tmpDir), serialized_dataset_names.txt) + +GET_SERIALIZED_DATASET_NAMES = $(addprefix $(scriptsDir), get_serialized_dataset_names.py) + +all: $(serialized_dataset_names_filename) + +# get the list of serialized dataset names (with '/' replaced with "___SLASH___") +$(serialized_dataset_names_filename): + @mkdir -p $(tmpDir) + poetry run python $(GET_SERIALIZED_DATASET_NAMES) $(serialized_dataset_names_filename) + +clean: + rm -rf $(serialized_dataset_names_filename) diff --git a/poetry.lock b/poetry.lock index c2531d24..62c60ded 100644 --- a/poetry.lock +++ b/poetry.lock @@ -277 +277 @@ name = "click" -version = "8.0.1" +version = "7.1.2" @@ -281,4 +281 @@ optional = false -python-versions = ">=3.6" - -[package.dependencies] -colorama = {version = "*", markers = "platform_system == \"Windows\""} +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" @@ -1410,0 +1408,17 @@ url = "vendors/trec-car-tools/python3" +[[package]] +name = "typer" +version = "0.3.2" +description = "Typer, build great CLIs. Easy to code. Based on Python type hints." +category = "main" +optional = false +python-versions = ">=3.6" + +[package.dependencies] +click = ">=7.1.1,<7.2.0" + +[package.extras] +test = ["pytest-xdist (>=1.32.0,<2.0.0)", "pytest-sugar (>=0.9.4,<0.10.0)", "mypy (==0.782)", "black (>=19.10b0,<20.0b0)", "isort (>=5.0.6,<6.0.0)", "shellingham (>=1.3.0,<2.0.0)", "pytest (>=4.4.0,<5.4.0)", "pytest-cov (>=2.10.0,<3.0.0)", "coverage (>=5.2,<6.0)"] +all = ["colorama (>=0.4.3,<0.5.0)", "shellingham (>=1.3.0,<2.0.0)"] +dev = ["autoflake (>=1.3.1,<2.0.0)", "flake8 (>=3.8.3,<4.0.0)"] +doc = ["mkdocs (>=1.1.2,<2.0.0)", "mkdocs-material (>=5.4.0,<6.0.0)", "markdown-include (>=0.5.1,<0.6.0)"] + @@ -1520 +1534 @@ python-versions = "^3.8" -content-hash = "3483e9538bc8600e998a570d1511aa3a5fcd820da3eb98c12b5952c9f2c6c97f" +content-hash = "4de5a24ba38eaa17c695aa1fcc59a54d5bd40bfc9d4c1651b29279ea5c7c64fc" @@ -1815,2 +1829,2 @@ click = [ - {file = "click-8.0.1-py3-none-any.whl", hash = "sha256:fba402a4a47334742d782209a7c79bc448911afe1149d07bdabdf480b3e2f4b6"}, - {file = "click-8.0.1.tar.gz", hash = "sha256:8c04c11192119b1ef78ea049e0a6f0463e4c48ef00a30160c704337586f3ad7a"}, + {file = "click-7.1.2-py2.py3-none-any.whl", hash = "sha256:dacca89f4bfadd5de3d7489b7c8a566eee0d3676333fbb50030263894c38c0dc"}, + {file = "click-7.1.2.tar.gz", hash = "sha256:d2b5255c7c6349bc1bd1e59e08cd12acbbd63ce649f2588755783aa94dfb6b1a"}, @@ -2743,0 +2758,4 @@ trec-car-tools = [] +typer = [ + {file = "typer-0.3.2-py3-none-any.whl", hash = "sha256:ba58b920ce851b12a2d790143009fa00ac1d05b3ff3257061ff69dbdfc3d161b"}, + {file = "typer-0.3.2.tar.gz", hash = "sha256:5455d750122cff96745b0dec87368f56d023725a7ebc9d2e54dd23dc86816303"}, +] diff --git a/pyproject.toml b/pyproject.toml index 93041407..b2a6b729 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -27,0 +28 @@ datasets = {extras = ["streaming"], git = "https://github.com/huggingface/datase +typer = "^0.3.2"
ae51f18706f03aaa53abd89158cc0c293bdde991
Sylvain Lesage
2021-08-20T09:32:44
feat: 🎸 add elapsed time to benchmark
diff --git a/benchmark/test_datasets.py b/benchmark/test_datasets.py index 8b9b26b3..d909594f 100644 --- a/benchmark/test_datasets.py +++ b/benchmark/test_datasets.py @@ -19,0 +20 @@ def get_info_report(dataset: str): + t = time.process_time() @@ -28,0 +30 @@ def get_info_report(dataset: str): + "elapsed_seconds": time.process_time() - t, @@ -38,0 +41 @@ def get_info_report(dataset: str): + "elapsed_seconds": time.process_time() - t, @@ -43,0 +47 @@ def get_configs_report(dataset: str): + t = time.process_time() @@ -52,0 +57 @@ def get_configs_report(dataset: str): + "elapsed_seconds": time.process_time() - t, @@ -62,0 +68 @@ def get_configs_report(dataset: str): + "elapsed_seconds": time.process_time() - t, @@ -67,0 +74 @@ def get_splits_report(dataset: str, config: str): + t = time.process_time() @@ -77,0 +85 @@ def get_splits_report(dataset: str, config: str): + "elapsed_seconds": time.process_time() - t, @@ -88,0 +97 @@ def get_splits_report(dataset: str, config: str): + "elapsed_seconds": time.process_time() - t, @@ -94,0 +104 @@ def get_rows_report(dataset: str, config: str, split: str): + t = time.process_time() @@ -105,0 +116 @@ def get_rows_report(dataset: str, config: str, split: str): + "elapsed_seconds": time.process_time() - t, @@ -116,0 +128 @@ def get_rows_report(dataset: str, config: str, split: str): + "elapsed_seconds": time.process_time() - t,
30823f9ca3411c2ce7df61c250d96ae779feef1b
Sylvain Lesage
2021-08-20T09:19:54
style: 💄 sort the imports with isort
diff --git a/Makefile b/Makefile index e4327758..f8ffe6ab 100644 --- a/Makefile +++ b/Makefile @@ -16,0 +17 @@ quality: + poetry run isort --check-only tests src benchmark @@ -20,0 +22 @@ style: + poetry run isort tests src benchmark diff --git a/benchmark/test_datasets.py b/benchmark/test_datasets.py index c0a4248c..8b9b26b3 100644 --- a/benchmark/test_datasets.py +++ b/benchmark/test_datasets.py @@ -1,5 +1 @@ -from datasets_preview_backend.queries.rows import extract_rows -from datasets_preview_backend.queries.splits import get_splits -from datasets_preview_backend.queries.configs import get_configs -from datasets_preview_backend.queries.info import get_info -from datasets import list_datasets, disable_progress_bar +import concurrent.futures @@ -7 +2,0 @@ import json -import time @@ -9 +4,8 @@ import logging -import concurrent.futures +import time + +from datasets import disable_progress_bar, list_datasets + +from datasets_preview_backend.queries.configs import get_configs +from datasets_preview_backend.queries.info import get_info +from datasets_preview_backend.queries.rows import extract_rows +from datasets_preview_backend.queries.splits import get_splits diff --git a/poetry.lock b/poetry.lock index c36a2cea..c2531d24 100644 --- a/poetry.lock +++ b/poetry.lock @@ -596,0 +597,14 @@ python-versions = "*" +[[package]] +name = "isort" +version = "5.9.3" +description = "A Python utility / library to sort Python imports." +category = "dev" +optional = false +python-versions = ">=3.6.1,<4.0" + +[package.extras] +pipfile_deprecated_finder = ["pipreqs", "requirementslib"] +requirements_deprecated_finder = ["pipreqs", "pip-api"] +colors = ["colorama (>=0.4.3,<0.5.0)"] +plugins = ["setuptools"] + @@ -1506 +1520 @@ python-versions = "^3.8" -content-hash = "8c5e0bd6527f095c35d5f6281a7a6ac659b7954e11b2a5ce315853392d8a66c3" +content-hash = "3483e9538bc8600e998a570d1511aa3a5fcd820da3eb98c12b5952c9f2c6c97f" @@ -1971,0 +1986,4 @@ iniconfig = [ +isort = [ + {file = "isort-5.9.3-py3-none-any.whl", hash = "sha256:e17d6e2b81095c9db0a03a8025a957f334d6ea30b26f9ec70805411e5c7c81f2"}, + {file = "isort-5.9.3.tar.gz", hash = "sha256:9c2ea1e62d871267b78307fe511c0838ba0da28698c5732d54e2790bf3ba9899"}, +] diff --git a/pyproject.toml b/pyproject.toml index 07b55427..93041407 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -31,0 +32 @@ black = "^21.7b0" +isort = "^5.9.3" @@ -40,0 +42,3 @@ filterwarnings = [ + +[tool.isort] +profile = "black" diff --git a/src/datasets_preview_backend/config.py b/src/datasets_preview_backend/config.py index f07f1c64..2097c43b 100644 --- a/src/datasets_preview_backend/config.py +++ b/src/datasets_preview_backend/config.py @@ -1,0 +2 @@ import os + diff --git a/src/datasets_preview_backend/main.py b/src/datasets_preview_backend/main.py index 70461a54..00c914dd 100644 --- a/src/datasets_preview_backend/main.py +++ b/src/datasets_preview_backend/main.py @@ -0,0 +1 @@ +import uvicorn @@ -3 +3,0 @@ from starlette.routing import Route -import uvicorn @@ -6 +6 @@ from datasets_preview_backend.config import PORT -from datasets_preview_backend.routes import healthcheck, rows, configs, splits, info +from datasets_preview_backend.routes import configs, healthcheck, info, rows, splits diff --git a/src/datasets_preview_backend/queries/configs.py b/src/datasets_preview_backend/queries/configs.py index d3b41780..a06d695f 100644 --- a/src/datasets_preview_backend/queries/configs.py +++ b/src/datasets_preview_backend/queries/configs.py @@ -2 +1,0 @@ import logging - @@ -5,4 +4 @@ from typing import List -from datasets import ( - prepare_module, - import_main_class, -) +from datasets import import_main_class, prepare_module @@ -10,4 +6 @@ from datasets import ( -from datasets_preview_backend.exceptions import ( - Status400Error, - Status404Error, -) +from datasets_preview_backend.exceptions import Status400Error, Status404Error diff --git a/src/datasets_preview_backend/queries/info.py b/src/datasets_preview_backend/queries/info.py index a7a8a538..c79bce28 100644 --- a/src/datasets_preview_backend/queries/info.py +++ b/src/datasets_preview_backend/queries/info.py @@ -1 +0,0 @@ -import logging @@ -2,0 +2 @@ import json +import logging @@ -4 +3,0 @@ from dataclasses import asdict - @@ -7,4 +6 @@ from typing import List -from datasets import ( - prepare_module, - import_main_class, -) +from datasets import import_main_class, prepare_module @@ -12,4 +8 @@ from datasets import ( -from datasets_preview_backend.exceptions import ( - Status400Error, - Status404Error, -) +from datasets_preview_backend.exceptions import Status400Error, Status404Error diff --git a/src/datasets_preview_backend/queries/rows.py b/src/datasets_preview_backend/queries/rows.py index 1514eb2b..3eba5393 100644 --- a/src/datasets_preview_backend/queries/rows.py +++ b/src/datasets_preview_backend/queries/rows.py @@ -1 +0,0 @@ -import re @@ -3 +2 @@ import logging - +import re @@ -6,4 +5 @@ from typing import List -from datasets import ( - IterableDataset, - load_dataset, -) +from datasets import IterableDataset, load_dataset @@ -11,4 +7 @@ from datasets import ( -from datasets_preview_backend.exceptions import ( - Status400Error, - Status404Error, -) +from datasets_preview_backend.exceptions import Status400Error, Status404Error diff --git a/src/datasets_preview_backend/queries/splits.py b/src/datasets_preview_backend/queries/splits.py index 7ede618f..f0bd1ed7 100644 --- a/src/datasets_preview_backend/queries/splits.py +++ b/src/datasets_preview_backend/queries/splits.py @@ -6,4 +6 @@ from datasets.utils.streaming_download_manager import StreamingDownloadManager -from datasets_preview_backend.exceptions import ( - Status400Error, - Status404Error, -) +from datasets_preview_backend.exceptions import Status400Error, Status404Error diff --git a/src/datasets_preview_backend/routes.py b/src/datasets_preview_backend/routes.py index 565b37ee..9992c9a5 100644 --- a/src/datasets_preview_backend/routes.py +++ b/src/datasets_preview_backend/routes.py @@ -1,0 +2 @@ import logging + @@ -3 +4 @@ from starlette.requests import Request -from starlette.responses import PlainTextResponse, JSONResponse +from starlette.responses import JSONResponse, PlainTextResponse @@ -6,5 +6,0 @@ from datasets_preview_backend.config import EXTRACT_ROWS_LIMIT -from datasets_preview_backend.queries.info import get_info -from datasets_preview_backend.queries.configs import get_configs -from datasets_preview_backend.queries.splits import get_splits -from datasets_preview_backend.queries.rows import extract_rows -from datasets_preview_backend.utils import get_int_value @@ -12 +7,0 @@ from datasets_preview_backend.exceptions import ( - StatusError, @@ -14,0 +10 @@ from datasets_preview_backend.exceptions import ( + StatusError, @@ -15,0 +12,5 @@ from datasets_preview_backend.exceptions import ( +from datasets_preview_backend.queries.configs import get_configs +from datasets_preview_backend.queries.info import get_info +from datasets_preview_backend.queries.rows import extract_rows +from datasets_preview_backend.queries.splits import get_splits +from datasets_preview_backend.utils import get_int_value diff --git a/tests/queries/test_configs.py b/tests/queries/test_configs.py index ced98b6a..14a2adb4 100644 --- a/tests/queries/test_configs.py +++ b/tests/queries/test_configs.py @@ -3 +2,0 @@ import pytest - diff --git a/tests/queries/test_info.py b/tests/queries/test_info.py index 8fe6c022..43eb0309 100644 --- a/tests/queries/test_info.py +++ b/tests/queries/test_info.py @@ -3 +2,0 @@ import pytest -
c2afebc1b96994276c8cb0d62798adbc57323a29
Sylvain Lesage
2021-08-20T09:08:26
style: 💄 use black to check and format
diff --git a/Makefile b/Makefile index 8ee6c034..e4327758 100644 --- a/Makefile +++ b/Makefile @@ -3 +3 @@ PORT ?= 8000 -.PHONY: install run test benchmark watch +.PHONY: install run test quality style benchmark watch @@ -13,0 +14,8 @@ test: +# Check that source code meets quality standards +quality: + poetry run black --check tests src benchmark + +# Format source code automatically +style: + poetry run black tests src benchmark + diff --git a/benchmark/test_datasets.py b/benchmark/test_datasets.py index 10b540eb..c0a4248c 100644 --- a/benchmark/test_datasets.py +++ b/benchmark/test_datasets.py @@ -123,2 +123 @@ def process_map(fun, iterator, max_workers): - future_to_item = {executor.submit( - fun, **item): item for item in iterator} + future_to_item = {executor.submit(fun, **item): item for item in iterator} @@ -131 +130 @@ def process_map(fun, iterator, max_workers): - print('%r generated an exception: %s' % (item, exc)) + print("%r generated an exception: %s" % (item, exc)) @@ -144 +143,2 @@ def export_all_datasets_exceptions(): - get_info_report, datasets_iterator, max_workers=max_workers) + get_info_report, datasets_iterator, max_workers=max_workers + ) @@ -148 +148,2 @@ def export_all_datasets_exceptions(): - get_configs_report, datasets_iterator, max_workers=max_workers) + get_configs_report, datasets_iterator, max_workers=max_workers + ) @@ -155,2 +156 @@ def export_all_datasets_exceptions(): - configs_iterator.append( - {"dataset": report["dataset"], "config": config}) + configs_iterator.append({"dataset": report["dataset"], "config": config}) @@ -169 +169,6 @@ def export_all_datasets_exceptions(): - {"dataset": report["dataset"], "config": report["config"], "split": split}) + { + "dataset": report["dataset"], + "config": report["config"], + "split": split, + } + ) diff --git a/poetry.lock b/poetry.lock index e6b5475e..c36a2cea 100644 --- a/poetry.lock +++ b/poetry.lock @@ -84,0 +85,8 @@ test = ["freezegun (>=0.3.12)", "mock (>=1.0.1,<3.0.0)", "nose (>=1.3.7)", "nose +[[package]] +name = "appdirs" +version = "1.4.4" +description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"." +category = "dev" +optional = false +python-versions = "*" + @@ -137,12 +144,0 @@ tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (> -[[package]] -name = "autopep8" -version = "1.5.7" -description = "A tool that automatically formats Python code to conform to the PEP 8 style guide" -category = "dev" -optional = false -python-versions = "*" - -[package.dependencies] -pycodestyle = ">=2.7.0" -toml = "*" - @@ -175,0 +172,22 @@ test = ["pytest", "pytest-cov", "coverage[toml] (>=5.2)"] +[[package]] +name = "black" +version = "21.7b0" +description = "The uncompromising code formatter." +category = "dev" +optional = false +python-versions = ">=3.6.2" + +[package.dependencies] +appdirs = "*" +click = ">=7.1.2" +mypy-extensions = ">=0.4.3" +pathspec = ">=0.8.1,<1" +regex = ">=2020.1.8" +tomli = ">=0.2.6,<2.0.0" + +[package.extras] +colorama = ["colorama (>=0.4.3)"] +d = ["aiohttp (>=3.6.0)", "aiohttp-cors (>=0.4.0)"] +python2 = ["typed-ast (>=1.4.2)"] +uvloop = ["uvloop (>=0.15.2)"] + @@ -322 +340 @@ streaming = ["aiohttp"] -tests = ["absl-py", "pytest", "pytest-xdist", "aiohttp", "apache-beam (>=2.26.0)", "elasticsearch", "aiobotocore (==1.2.2)", "boto3 (==1.16.43)", "botocore (==1.19.52)", "faiss-cpu", "fsspec", "moto[s3,server] (==2.0.4)", "rarfile (>=4.0)", "s3fs", "tensorflow (>=2.3)", "torch", "transformers", "bs4", "conllu", "langdetect", "lxml", "mwparserfromhell", "nltk", "openpyxl", "py7zr", "tldextract", "zstandard", "bert_score (>=0.3.6)", "rouge-score", "sacrebleu", "scipy", "seqeval", "scikit-learn", "jiwer", "sentencepiece", "toml (>=0.10.1)", "requests_file (>=1.5.1)", "tldextract (>=3.1.0)", "texttable (>=1.6.3)", "Werkzeug (>=1.0.1)", "six (>=1.15.0,<1.16.0)"] +tests = ["absl-py", "pytest", "pytest-xdist", "aiohttp", "apache-beam (>=2.26.0)", "elasticsearch", "aiobotocore (==1.2.2)", "boto3 (==1.16.43)", "botocore (==1.19.52)", "faiss-cpu", "fsspec", "moto[server,s3] (==2.0.4)", "rarfile (>=4.0)", "s3fs", "tensorflow (>=2.3)", "torch", "transformers", "bs4", "conllu", "langdetect", "lxml", "mwparserfromhell", "nltk", "openpyxl", "py7zr", "tldextract", "zstandard", "bert_score (>=0.3.6)", "rouge-score", "sacrebleu", "scipy", "seqeval", "scikit-learn", "jiwer", "sentencepiece", "toml (>=0.10.1)", "requests_file (>=1.5.1)", "tldextract (>=3.1.0)", "texttable (>=1.6.3)", "Werkzeug (>=1.0.1)", "six (>=1.15.0,<1.16.0)"] @@ -605,0 +624 @@ url = "https://github.com/kpu/kenlm/archive/master.zip" + @@ -708,0 +728,8 @@ type = ["mypy", "mypy-extensions"] +[[package]] +name = "mypy-extensions" +version = "0.4.3" +description = "Experimental type system extensions for programs checked with the mypy typechecker." +category = "dev" +optional = false +python-versions = "*" + @@ -847,0 +875,8 @@ test = ["hypothesis (>=3.58)", "pytest (>=6.0)", "pytest-xdist"] +[[package]] +name = "pathspec" +version = "0.9.0" +description = "Utility library for gitignore style pattern matching of file paths." +category = "dev" +optional = false +python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7" + @@ -940,8 +974,0 @@ pyasn1 = ">=0.4.6,<0.5.0" -[[package]] -name = "pycodestyle" -version = "2.7.0" -description = "Python style guide checker" -category = "dev" -optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" - @@ -1276,0 +1304,8 @@ python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*" +[[package]] +name = "tomli" +version = "1.2.1" +description = "A lil' TOML parser" +category = "dev" +optional = false +python-versions = ">=3.6" + @@ -1471 +1506 @@ python-versions = "^3.8" -content-hash = "ce04c97957959ceff7976d93a0467dd93b7cb05397a482b55b82eda9059a8755" +content-hash = "8c5e0bd6527f095c35d5f6281a7a6ac659b7954e11b2a5ce315853392d8a66c3" @@ -1544,0 +1580,4 @@ apache-beam = [ +appdirs = [ + {file = "appdirs-1.4.4-py2.py3-none-any.whl", hash = "sha256:a841dacd6b99318a741b166adb07e19ee71a274450e68237b4650ca1055ab128"}, + {file = "appdirs-1.4.4.tar.gz", hash = "sha256:7d5d0167b2b1ba821647616af46a749d1c653740dd0d2415100fe26e27afdf41"}, +] @@ -1565,4 +1603,0 @@ attrs = [ -autopep8 = [ - {file = "autopep8-1.5.7-py2.py3-none-any.whl", hash = "sha256:aa213493c30dcdac99537249ee65b24af0b2c29f2e83cd8b3f68760441ed0db9"}, - {file = "autopep8-1.5.7.tar.gz", hash = "sha256:276ced7e9e3cb22e5d7c14748384a5cf5d9002257c0ed50c0e075b68011bb6d0"}, -] @@ -1609,0 +1645,4 @@ bcj-cffi = [ +black = [ + {file = "black-21.7b0-py3-none-any.whl", hash = "sha256:1c7aa6ada8ee864db745b22790a32f94b2795c253a75d6d9b5e439ff10d23116"}, + {file = "black-21.7b0.tar.gz", hash = "sha256:c8373c6491de9362e39271630b65b964607bc5c79c83783547d76c839b3aa219"}, +] @@ -2057,0 +2097,4 @@ multivolumefile = [ +mypy-extensions = [ + {file = "mypy_extensions-0.4.3-py2.py3-none-any.whl", hash = "sha256:090fedd75945a69ae91ce1303b5824f428daf5a028d2f6ab8a299250a846f15d"}, + {file = "mypy_extensions-0.4.3.tar.gz", hash = "sha256:2d82818f5bb3e369420cb3c4060a7970edba416647068eb4c5343488a6c604a8"}, +] @@ -2142,0 +2186,4 @@ pandas = [ +pathspec = [ + {file = "pathspec-0.9.0-py2.py3-none-any.whl", hash = "sha256:7d15c4ddb0b5c802d161efc417ec1a2558ea2653c2e8ad9c19098201dc1c993a"}, + {file = "pathspec-0.9.0.tar.gz", hash = "sha256:e564499435a2673d586f6b2130bb5b95f04a3ba06f81b8f895b651a3c76aabb1"}, +] @@ -2282,4 +2328,0 @@ pyasn1-modules = [ -pycodestyle = [ - {file = "pycodestyle-2.7.0-py2.py3-none-any.whl", hash = "sha256:514f76d918fcc0b55c6680472f0a37970994e07bbb80725808c17089be302068"}, - {file = "pycodestyle-2.7.0.tar.gz", hash = "sha256:c389c1d06bf7904078ca03399a4816f974a1d590090fecea0c63ec26ebaf1cef"}, -] @@ -2669,0 +2713,4 @@ toml = [ +tomli = [ + {file = "tomli-1.2.1-py3-none-any.whl", hash = "sha256:8dd0e9524d6f386271a36b41dbf6c57d8e32fd96fd22b6584679dc569d20899f"}, + {file = "tomli-1.2.1.tar.gz", hash = "sha256:a5b75cb6f3968abb47af1b40c1819dc519ea82bcc065776a866e8d74c5ca9442"}, +] diff --git a/pyproject.toml b/pyproject.toml index 23ac8cb4..07b55427 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -31 +31 @@ pytest = "^6.2.4" -autopep8 = "^1.5.7" +black = "^21.7b0" diff --git a/src/datasets_preview_backend/queries/info.py b/src/datasets_preview_backend/queries/info.py index 7464d7d6..a7a8a538 100644 --- a/src/datasets_preview_backend/queries/info.py +++ b/src/datasets_preview_backend/queries/info.py @@ -23,2 +23,4 @@ def get_info(dataset: str) -> any: - info = {config_name: asdict( - config_info) for config_name, config_info in total_dataset_infos.items()} + info = { + config_name: asdict(config_info) + for config_name, config_info in total_dataset_infos.items() + } diff --git a/src/datasets_preview_backend/queries/rows.py b/src/datasets_preview_backend/queries/rows.py index 58ad62a6..1514eb2b 100644 --- a/src/datasets_preview_backend/queries/rows.py +++ b/src/datasets_preview_backend/queries/rows.py @@ -52,2 +52 @@ def extract_rows(dataset: str, config: str, split: str, num_rows: int): - raise Status404Error( - "The dataset config could not be found.") from err + raise Status404Error("The dataset config could not be found.") from err diff --git a/src/datasets_preview_backend/queries/splits.py b/src/datasets_preview_backend/queries/splits.py index 973b8c18..7ede618f 100644 --- a/src/datasets_preview_backend/queries/splits.py +++ b/src/datasets_preview_backend/queries/splits.py @@ -19,2 +19 @@ def get_splits(dataset: str, config: str) -> List[str]: - raise Status404Error( - "The dataset config could not be found.") from err + raise Status404Error("The dataset config could not be found.") from err diff --git a/tests/queries/test_rows.py b/tests/queries/test_rows.py index bc40d240..20f40836 100644 --- a/tests/queries/test_rows.py +++ b/tests/queries/test_rows.py @@ -66,2 +66 @@ def test_extract_not_implemented_split(): - extract_rows("ade_corpus_v2", - "Ade_corpus_v2_classification", "train", 10) + extract_rows("ade_corpus_v2", "Ade_corpus_v2_classification", "train", 10)
4004083bc1c15a54db127b8256dd44c8f916f18c
Sylvain Lesage
2021-08-20T08:57:40
refactor: 💡 rename quality to benchmark
diff --git a/Makefile b/Makefile index 93b177f8..8ee6c034 100644 --- a/Makefile +++ b/Makefile @@ -3 +3 @@ PORT ?= 8000 -.PHONY: install run test quality watch +.PHONY: install run test benchmark watch @@ -14,2 +14,2 @@ test: -quality: - poetry run python quality/test_datasets.py +benchmark: + poetry run python benchmark/test_datasets.py diff --git a/quality/test_datasets.py b/benchmark/test_datasets.py similarity index 100% rename from quality/test_datasets.py rename to benchmark/test_datasets.py
969a5911ce824a4023328f9c9d8eb6e4c0c3a93c
Sylvain Lesage
2021-08-20T08:47:38
feat: 🎸 add /info to the benchmark
diff --git a/quality/test_datasets.py b/quality/test_datasets.py index 9aaf3a46..10b540eb 100644 --- a/quality/test_datasets.py +++ b/quality/test_datasets.py @@ -0,0 +1,4 @@ +from datasets_preview_backend.queries.rows import extract_rows +from datasets_preview_backend.queries.splits import get_splits +from datasets_preview_backend.queries.configs import get_configs +from datasets_preview_backend.queries.info import get_info @@ -4 +7,0 @@ import time -from tqdm.contrib.concurrent import process_map @@ -5,0 +9 @@ import logging +import concurrent.futures @@ -11,3 +15,23 @@ disable_progress_bar() -from datasets_preview_backend.queries.configs import get_configs -from datasets_preview_backend.queries.splits import get_splits -from datasets_preview_backend.queries.rows import extract_rows + +def get_info_report(dataset: str): + try: + info = get_info(dataset)["info"] + return { + "dataset": dataset, + "info": info, + "success": True, + "exception": None, + "message": None, + "cause": None, + "cause_message": None, + } + except Exception as err: + return { + "dataset": dataset, + "info": None, + "success": False, + "exception": type(err).__name__, + "message": str(err), + "cause": type(err.__cause__).__name__, + "cause_message": str(err.__cause__), + } @@ -93,0 +118,19 @@ def get_rows_report(dataset: str, config: str, split: str): +def process_map(fun, iterator, max_workers): + # We can use a with statement to ensure threads are cleaned up promptly + results = [] + with concurrent.futures.ThreadPoolExecutor(max_workers=max_workers) as executor: + # Start the load operations and mark each future with its URL + future_to_item = {executor.submit( + fun, **item): item for item in iterator} + for future in concurrent.futures.as_completed(future_to_item): + item = future_to_item[future] + print(item) + try: + result = future.result() + except Exception as exc: + print('%r generated an exception: %s' % (item, exc)) + else: + results.append(result) + return results + + @@ -95 +138 @@ def export_all_datasets_exceptions(): - chunksize = 5 + max_workers = 5 @@ -96,0 +140,5 @@ def export_all_datasets_exceptions(): + datasets_iterator = [{"dataset": dataset} for dataset in datasets] + + # print("Get info for all the datasets") + info_reports = process_map( + get_info_report, datasets_iterator, max_workers=max_workers) @@ -99 +147,2 @@ def export_all_datasets_exceptions(): - configs_reports = process_map(get_configs_report, datasets, chunksize=chunksize) + configs_reports = process_map( + get_configs_report, datasets_iterator, max_workers=max_workers) @@ -102,2 +151 @@ def export_all_datasets_exceptions(): - splits_datasets = [] - splits_configs = [] + configs_iterator = [] @@ -107,2 +155,2 @@ def export_all_datasets_exceptions(): - splits_datasets.append(report["dataset"]) - splits_configs.append(config) + configs_iterator.append( + {"dataset": report["dataset"], "config": config}) @@ -111,3 +159,2 @@ def export_all_datasets_exceptions(): - splits_datasets, - splits_configs, - chunksize=chunksize, + configs_iterator, + max_workers=max_workers, @@ -117,3 +164 @@ def export_all_datasets_exceptions(): - rows_datasets = [] - rows_configs = [] - rows_splits = [] + splits_iterator = [] @@ -123,3 +168,2 @@ def export_all_datasets_exceptions(): - rows_datasets.append(report["dataset"]) - rows_configs.append(report["config"]) - rows_splits.append(split) + splits_iterator.append( + {"dataset": report["dataset"], "config": report["config"], "split": split}) @@ -128,4 +172,2 @@ def export_all_datasets_exceptions(): - rows_datasets, - rows_configs, - rows_splits, - chunksize=chunksize, + splits_iterator, + max_workers=max_workers, @@ -134,0 +177 @@ def export_all_datasets_exceptions(): + "info_reports": info_reports,
0319c34e428b1b42f4486f546b0d800fb73e3994
Sylvain Lesage
2021-08-20T08:45:10
style: 💄 use autopep8 and reformat files
diff --git a/poetry.lock b/poetry.lock index 3d1b606b..e6b5475e 100644 --- a/poetry.lock +++ b/poetry.lock @@ -85,8 +84,0 @@ test = ["freezegun (>=0.3.12)", "mock (>=1.0.1,<3.0.0)", "nose (>=1.3.7)", "nose -[[package]] -name = "appdirs" -version = "1.4.4" -description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"." -category = "dev" -optional = false -python-versions = "*" - @@ -144,0 +137,12 @@ tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (> +[[package]] +name = "autopep8" +version = "1.5.7" +description = "A tool that automatically formats Python code to conform to the PEP 8 style guide" +category = "dev" +optional = false +python-versions = "*" + +[package.dependencies] +pycodestyle = ">=2.7.0" +toml = "*" + @@ -172,22 +175,0 @@ test = ["pytest", "pytest-cov", "coverage[toml] (>=5.2)"] -[[package]] -name = "black" -version = "21.7b0" -description = "The uncompromising code formatter." -category = "dev" -optional = false -python-versions = ">=3.6.2" - -[package.dependencies] -appdirs = "*" -click = ">=7.1.2" -mypy-extensions = ">=0.4.3" -pathspec = ">=0.8.1,<1" -regex = ">=2020.1.8" -tomli = ">=0.2.6,<2.0.0" - -[package.extras] -colorama = ["colorama (>=0.4.3)"] -d = ["aiohttp (>=3.6.0)", "aiohttp-cors (>=0.4.0)"] -python2 = ["typed-ast (>=1.4.2)"] -uvloop = ["uvloop (>=0.15.2)"] - @@ -340 +322 @@ streaming = ["aiohttp"] -tests = ["absl-py", "pytest", "pytest-xdist", "aiohttp", "apache-beam (>=2.26.0)", "elasticsearch", "aiobotocore (==1.2.2)", "boto3 (==1.16.43)", "botocore (==1.19.52)", "faiss-cpu", "fsspec", "moto[server,s3] (==2.0.4)", "rarfile (>=4.0)", "s3fs", "tensorflow (>=2.3)", "torch", "transformers", "bs4", "conllu", "langdetect", "lxml", "mwparserfromhell", "nltk", "openpyxl", "py7zr", "tldextract", "zstandard", "bert_score (>=0.3.6)", "rouge-score", "sacrebleu", "scipy", "seqeval", "scikit-learn", "jiwer", "sentencepiece", "toml (>=0.10.1)", "requests_file (>=1.5.1)", "tldextract (>=3.1.0)", "texttable (>=1.6.3)", "Werkzeug (>=1.0.1)", "six (>=1.15.0,<1.16.0)"] +tests = ["absl-py", "pytest", "pytest-xdist", "aiohttp", "apache-beam (>=2.26.0)", "elasticsearch", "aiobotocore (==1.2.2)", "boto3 (==1.16.43)", "botocore (==1.19.52)", "faiss-cpu", "fsspec", "moto[s3,server] (==2.0.4)", "rarfile (>=4.0)", "s3fs", "tensorflow (>=2.3)", "torch", "transformers", "bs4", "conllu", "langdetect", "lxml", "mwparserfromhell", "nltk", "openpyxl", "py7zr", "tldextract", "zstandard", "bert_score (>=0.3.6)", "rouge-score", "sacrebleu", "scipy", "seqeval", "scikit-learn", "jiwer", "sentencepiece", "toml (>=0.10.1)", "requests_file (>=1.5.1)", "tldextract (>=3.1.0)", "texttable (>=1.6.3)", "Werkzeug (>=1.0.1)", "six (>=1.15.0,<1.16.0)"] @@ -727,8 +708,0 @@ type = ["mypy", "mypy-extensions"] -[[package]] -name = "mypy-extensions" -version = "0.4.3" -description = "Experimental type system extensions for programs checked with the mypy typechecker." -category = "dev" -optional = false -python-versions = "*" - @@ -874,8 +847,0 @@ test = ["hypothesis (>=3.58)", "pytest (>=6.0)", "pytest-xdist"] -[[package]] -name = "pathspec" -version = "0.9.0" -description = "Utility library for gitignore style pattern matching of file paths." -category = "dev" -optional = false -python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7" - @@ -973,0 +940,8 @@ pyasn1 = ">=0.4.6,<0.5.0" +[[package]] +name = "pycodestyle" +version = "2.7.0" +description = "Python style guide checker" +category = "dev" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" + @@ -1303,8 +1276,0 @@ python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*" -[[package]] -name = "tomli" -version = "1.2.1" -description = "A lil' TOML parser" -category = "dev" -optional = false -python-versions = ">=3.6" - @@ -1505 +1471 @@ python-versions = "^3.8" -content-hash = "b19f9516833c7d7b59c4142dd1cb4137dbee62cb85391c0b578e26e61a69e9e1" +content-hash = "ce04c97957959ceff7976d93a0467dd93b7cb05397a482b55b82eda9059a8755" @@ -1579,4 +1544,0 @@ apache-beam = [ -appdirs = [ - {file = "appdirs-1.4.4-py2.py3-none-any.whl", hash = "sha256:a841dacd6b99318a741b166adb07e19ee71a274450e68237b4650ca1055ab128"}, - {file = "appdirs-1.4.4.tar.gz", hash = "sha256:7d5d0167b2b1ba821647616af46a749d1c653740dd0d2415100fe26e27afdf41"}, -] @@ -1602,0 +1565,4 @@ attrs = [ +autopep8 = [ + {file = "autopep8-1.5.7-py2.py3-none-any.whl", hash = "sha256:aa213493c30dcdac99537249ee65b24af0b2c29f2e83cd8b3f68760441ed0db9"}, + {file = "autopep8-1.5.7.tar.gz", hash = "sha256:276ced7e9e3cb22e5d7c14748384a5cf5d9002257c0ed50c0e075b68011bb6d0"}, +] @@ -1644,4 +1609,0 @@ bcj-cffi = [ -black = [ - {file = "black-21.7b0-py3-none-any.whl", hash = "sha256:1c7aa6ada8ee864db745b22790a32f94b2795c253a75d6d9b5e439ff10d23116"}, - {file = "black-21.7b0.tar.gz", hash = "sha256:c8373c6491de9362e39271630b65b964607bc5c79c83783547d76c839b3aa219"}, -] @@ -2096,4 +2057,0 @@ multivolumefile = [ -mypy-extensions = [ - {file = "mypy_extensions-0.4.3-py2.py3-none-any.whl", hash = "sha256:090fedd75945a69ae91ce1303b5824f428daf5a028d2f6ab8a299250a846f15d"}, - {file = "mypy_extensions-0.4.3.tar.gz", hash = "sha256:2d82818f5bb3e369420cb3c4060a7970edba416647068eb4c5343488a6c604a8"}, -] @@ -2185,4 +2142,0 @@ pandas = [ -pathspec = [ - {file = "pathspec-0.9.0-py2.py3-none-any.whl", hash = "sha256:7d15c4ddb0b5c802d161efc417ec1a2558ea2653c2e8ad9c19098201dc1c993a"}, - {file = "pathspec-0.9.0.tar.gz", hash = "sha256:e564499435a2673d586f6b2130bb5b95f04a3ba06f81b8f895b651a3c76aabb1"}, -] @@ -2327,0 +2282,4 @@ pyasn1-modules = [ +pycodestyle = [ + {file = "pycodestyle-2.7.0-py2.py3-none-any.whl", hash = "sha256:514f76d918fcc0b55c6680472f0a37970994e07bbb80725808c17089be302068"}, + {file = "pycodestyle-2.7.0.tar.gz", hash = "sha256:c389c1d06bf7904078ca03399a4816f974a1d590090fecea0c63ec26ebaf1cef"}, +] @@ -2712,4 +2669,0 @@ toml = [ -tomli = [ - {file = "tomli-1.2.1-py3-none-any.whl", hash = "sha256:8dd0e9524d6f386271a36b41dbf6c57d8e32fd96fd22b6584679dc569d20899f"}, - {file = "tomli-1.2.1.tar.gz", hash = "sha256:a5b75cb6f3968abb47af1b40c1819dc519ea82bcc065776a866e8d74c5ca9442"}, -] diff --git a/pyproject.toml b/pyproject.toml index 7741d326..23ac8cb4 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -30,2 +29,0 @@ datasets = {extras = ["streaming"], git = "https://github.com/huggingface/datase -black = "^21.7b0" -tqdm = "^4.61.2" @@ -32,0 +31 @@ pytest = "^6.2.4" +autopep8 = "^1.5.7" diff --git a/src/datasets_preview_backend/queries/info.py b/src/datasets_preview_backend/queries/info.py index 7c7caf91..7464d7d6 100644 --- a/src/datasets_preview_backend/queries/info.py +++ b/src/datasets_preview_backend/queries/info.py @@ -23 +23,2 @@ def get_info(dataset: str) -> any: - info = {config_name: asdict(config_info) for config_name, config_info in total_dataset_infos.items()} + info = {config_name: asdict( + config_info) for config_name, config_info in total_dataset_infos.items()} diff --git a/src/datasets_preview_backend/queries/rows.py b/src/datasets_preview_backend/queries/rows.py index 38239276..58ad62a6 100644 --- a/src/datasets_preview_backend/queries/rows.py +++ b/src/datasets_preview_backend/queries/rows.py @@ -15,0 +16 @@ from datasets_preview_backend.exceptions import ( + @@ -51 +52,2 @@ def extract_rows(dataset: str, config: str, split: str, num_rows: int): - raise Status404Error("The dataset config could not be found.") from err + raise Status404Error( + "The dataset config could not be found.") from err diff --git a/src/datasets_preview_backend/queries/splits.py b/src/datasets_preview_backend/queries/splits.py index 7ede618f..973b8c18 100644 --- a/src/datasets_preview_backend/queries/splits.py +++ b/src/datasets_preview_backend/queries/splits.py @@ -19 +19,2 @@ def get_splits(dataset: str, config: str) -> List[str]: - raise Status404Error("The dataset config could not be found.") from err + raise Status404Error( + "The dataset config could not be found.") from err diff --git a/tests/queries/test_info.py b/tests/queries/test_info.py index b46793fb..8fe6c022 100644 --- a/tests/queries/test_info.py +++ b/tests/queries/test_info.py @@ -22 +21,0 @@ def test_get_info(): - diff --git a/tests/queries/test_rows.py b/tests/queries/test_rows.py index 20f40836..bc40d240 100644 --- a/tests/queries/test_rows.py +++ b/tests/queries/test_rows.py @@ -66 +66,2 @@ def test_extract_not_implemented_split(): - extract_rows("ade_corpus_v2", "Ade_corpus_v2_classification", "train", 10) + extract_rows("ade_corpus_v2", + "Ade_corpus_v2_classification", "train", 10)
11771939b09fb132bdc26a56977546e538e944da
Sylvain Lesage
2021-08-19T14:55:11
chore: 🤖 version bump
diff --git a/pyproject.toml b/pyproject.toml index 4eaca019..7741d326 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -3 +3 @@ name = "datasets-preview-backend" -version = "0.2.0" +version = "0.3.0"
10d860cece28341e236614e35ddf47b9027d5e00
Sylvain Lesage
2021-08-19T14:54:48
feat: 🎸 add /info endpoint
diff --git a/README.md b/README.md index 4e2bd12e..f08e76dc 100644 --- a/README.md +++ b/README.md @@ -62,0 +63,100 @@ Responses: +### /info + +> Return the dataset_info.json file for the dataset + +Example: http://54.158.211.3/info?dataset=glue + +Method: `GET` + +Parameters: + +- `dataset` (required): the dataset ID + +Responses: + +- `200`: JSON content with the following structure: + + ```json + { + "dataset": "glue", + "info": { + "cola": { + "description": "GLUE, the General Language Understanding Evaluation benchmark\n(https://gluebenchmark.com/) is a collection of resources for training,\nevaluating, and analyzing natural language understanding systems.\n\n", + "citation": "@article{warstadt2018neural,\n title={Neural Network Acceptability Judgments},\n author={Warstadt, Alex and Singh, Amanpreet and Bowman, Samuel R},\n journal={arXiv preprint arXiv:1805.12471},\n year={2018}\n}\n@inproceedings{wang2019glue,\n title={{GLUE}: A Multi-Task Benchmark and Analysis Platform for Natural Language Understanding},\n author={Wang, Alex and Singh, Amanpreet and Michael, Julian and Hill, Felix and Levy, Omer and Bowman, Samuel R.},\n note={In the Proceedings of ICLR.},\n year={2019}\n}\n\nNote that each GLUE dataset has its own citation. Please see the source to see\nthe correct citation for each contained dataset.", + "homepage": "https://nyu-mll.github.io/CoLA/", + "license": "", + "features": { + "sentence": { + "dtype": "string", + "id": null, + "_type": "Value" + }, + "label": { + "num_classes": 2, + "names": [ + "unacceptable", + "acceptable" + ], + "names_file": null, + "id": null, + "_type": "ClassLabel" + }, + "idx": { + "dtype": "int32", + "id": null, + "_type": "Value" + } + }, + "post_processed": null, + "supervised_keys": null, + "task_templates": null, + "builder_name": "glue", + "config_name": "cola", + "version": { + "version_str": "1.0.0", + "description": "", + "major": 1, + "minor": 0, + "patch": 0 + }, + "splits": { + "test" : { + "name": "test", + "num_bytes": 61049, + "num_examples": 1063, + "dataset_name": "glue" + }, + "train": { + "name": "train", + "num_bytes": 489149, + "num_examples": 8551, + "dataset_name": "glue" + }, + "validation": { + "name": "validation", + "num_bytes": 60850, + "num_examples": 1043, + "dataset_name": "glue" + } + }, + "download_checksums": { + "https://dl.fbaipublicfiles.com/glue/data/CoLA.zip": { + "num_bytes": 376971, + "checksum": "f212fcd832b8f7b435fb991f101abf89f96b933ab400603bf198960dfc32cbff" + } + }, + "download_size": 376971, + "post_processing_size": null, + "dataset_size": 611048, + "size_in_bytes": 988019 + }, + "sst2": { ... }, + ... + } + } + ``` + +- `400`: the dataset script is erroneous +- `404`: the dataset cannot be found +- `500`: application error + diff --git a/src/datasets_preview_backend/main.py b/src/datasets_preview_backend/main.py index fc40dc76..70461a54 100644 --- a/src/datasets_preview_backend/main.py +++ b/src/datasets_preview_backend/main.py @@ -6 +6 @@ from datasets_preview_backend.config import PORT -from datasets_preview_backend.routes import healthcheck, rows, configs, splits +from datasets_preview_backend.routes import healthcheck, rows, configs, splits, info @@ -15,0 +16 @@ def app(): + Route("/info", endpoint=info), diff --git a/src/datasets_preview_backend/queries/info.py b/src/datasets_preview_backend/queries/info.py new file mode 100644 index 00000000..7c7caf91 --- /dev/null +++ b/src/datasets_preview_backend/queries/info.py @@ -0,0 +1,31 @@ +import logging +import json +from dataclasses import asdict + +from typing import List + +from datasets import ( + prepare_module, + import_main_class, +) + +from datasets_preview_backend.exceptions import ( + Status400Error, + Status404Error, +) + + +def get_info(dataset: str) -> any: + try: + module_path, *_ = prepare_module(dataset, dataset=True) + builder_cls = import_main_class(module_path, dataset=True) + total_dataset_infos = builder_cls.get_all_exported_dataset_infos() + info = {config_name: asdict(config_info) for config_name, config_info in total_dataset_infos.items()} + except FileNotFoundError as err: + raise Status404Error("The dataset info could not be found.") from err + except Exception as err: + raise Status400Error( + "The dataset info could not be parsed from the dataset." + ) from err + + return {"dataset": dataset, "info": info} diff --git a/src/datasets_preview_backend/routes.py b/src/datasets_preview_backend/routes.py index 8aa5da00..565b37ee 100644 --- a/src/datasets_preview_backend/routes.py +++ b/src/datasets_preview_backend/routes.py @@ -5,0 +6 @@ from datasets_preview_backend.config import EXTRACT_ROWS_LIMIT +from datasets_preview_backend.queries.info import get_info @@ -26,0 +28,16 @@ async def healthcheck(_: Request): +async def info(request: Request): + dataset: str = request.query_params.get("dataset") + + if dataset is None: + return PlainTextResponse( + "'dataset' is a required query parameter.", status_code=400 + ) + + try: + return JSONResponse(get_info(dataset)) + except (Status400Error, Status404Error) as err: + log_error(err) + return PlainTextResponse(err.message, status_code=err.status_code) + # other exceptions will generate a 500 response + + diff --git a/tests/queries/test_info.py b/tests/queries/test_info.py new file mode 100644 index 00000000..b46793fb --- /dev/null +++ b/tests/queries/test_info.py @@ -0,0 +1,47 @@ +import pytest + + +from datasets_preview_backend.queries.info import ( + Status400Error, + Status404Error, + get_info, +) + + +def test_get_info(): + dataset = "glue" + response = get_info(dataset) + assert "dataset" in response + assert response["dataset"] == dataset + assert "info" in response + info = response["info"] + assert len(list(info.keys())) == 12 + assert "cola" in info + + + +def test_script_error(): + # raises "ModuleNotFoundError: No module named 'datasets_modules.datasets.br-quad-2'", which should be caught and raised as DatasetBuilderScriptError + with pytest.raises(Status400Error): + get_info("piEsposito/br-quad-2.0") + + +def test_no_dataset(): + # the dataset does not exist + with pytest.raises(Status404Error): + get_info("doesnotexist") + + +def test_no_dataset_no_script(): + # the dataset does not contain a script + with pytest.raises(Status404Error): + get_info("AConsApart/anime_subtitles_DialoGPT") + # raises "ModuleNotFoundError: No module named 'datasets_modules.datasets.Test'", which should be caught and raised as DatasetBuilderScriptError + with pytest.raises(Status404Error): + get_info("TimTreasure4/Test") + + +def test_no_dataset_bad_script_name(): + # the dataset script name is incorrect + with pytest.raises(Status404Error): + get_info("Cropinky/rap_lyrics_english")
e92753e8ddda4997bd155f0ee1294a3eacefb78f
Sylvain Lesage
2021-08-19T12:45:06
docs: ✏️ mention release tags in the upgrade doc
diff --git a/INSTALL.md b/INSTALL.md index eea452ee..d1c1b5d6 100644 --- a/INSTALL.md +++ b/INSTALL.md @@ -23,0 +24,2 @@ git merge +# or better +# git checkout 0.2.0 # <- the latest release tag (https://github.com/huggingface/datasets-preview-backend/releases/latest)
4040c9567364e2951de80991f19d60894d155dba
Sylvain Lesage
2021-08-19T12:34:11
chore: 🤖 version bump
diff --git a/pyproject.toml b/pyproject.toml index ff60ac85..4eaca019 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -3 +3 @@ name = "datasets-preview-backend" -version = "0.1.0" +version = "0.2.0"
d452c65736d609e57fe31ff6de6f4c74d5c7f9bc
Sylvain Lesage
2021-08-19T12:30:32
feat: 🎸 upgrade datasets to current master version
diff --git a/poetry.lock b/poetry.lock index 7a41abed..3d1b606b 100644 --- a/poetry.lock +++ b/poetry.lock @@ -266,0 +267,8 @@ unicode_backport = ["unicodedata2"] +[[package]] +name = "clang" +version = "5.0" +description = "libclang python bindings" +category = "main" +optional = false +python-versions = "*" + @@ -288 +296 @@ name = "conllu" -version = "4.4" +version = "4.4.1" @@ -292 +300 @@ optional = false -python-versions = "*" +python-versions = ">=3.6" @@ -304,2 +312,2 @@ name = "datasets" -version = "1.11.0" -description = "HuggingFace/Datasets is an open library of NLP datasets." +version = "1.11.1.dev0" +description = "" @@ -308,0 +317 @@ python-versions = "*" +develop = false @@ -314 +323 @@ fsspec = ">=2021.05.0" -huggingface-hub = "<0.1.0" +huggingface_hub = "<0.1.0" @@ -321 +330 @@ requests = ">=2.19.0" -tqdm = ">=4.42" +tqdm = ">=4.62.1" @@ -326,6 +334,0 @@ apache-beam = ["apache-beam (>=2.26.0)"] -benchmarks = ["numpy (==1.18.5)", "tensorflow (==2.3.0)", "torch (==1.6.0)", "transformers (==3.0.2)"] -dev = ["absl-py", "pytest", "pytest-xdist", "aiohttp", "apache-beam (>=2.26.0)", "elasticsearch", "aiobotocore (==1.2.2)", "boto3 (==1.16.43)", "botocore (==1.19.52)", "fsspec", "moto[server,s3] (==2.0.4)", "rarfile (>=4.0)", "s3fs", "tensorflow (>=2.3)", "torch", "transformers", "bs4", "conllu", "langdetect", "lxml", "mwparserfromhell", "nltk", "openpyxl", "py7zr", "tldextract", "zstandard", "bert-score (>=0.3.6)", "rouge-score", "sacrebleu", "scipy", "seqeval", "scikit-learn", "jiwer", "sentencepiece", "toml (>=0.10.1)", "requests-file (>=1.5.1)", "tldextract (>=3.1.0)", "texttable (>=1.6.3)", "Werkzeug (>=1.0.1)", "six (>=1.15.0,<1.16.0)", "black (==21.4b0)", "flake8 (==3.7.9)", "isort", "pyyaml (>=5.3.1)", "importlib-resources"] -docs = ["docutils (==0.16.0)", "recommonmark", "sphinx (==3.1.2)", "sphinx-markdown-tables", "sphinx-rtd-theme (==0.4.3)", "sphinxext-opengraph (==0.4.1)", "sphinx-copybutton", "fsspec", "s3fs"] -quality = ["black (==21.4b0)", "flake8 (==3.7.9)", "isort", "pyyaml (>=5.3.1)"] -s3 = ["fsspec", "boto3 (==1.16.43)", "botocore (==1.19.52)", "s3fs"] -streaming = ["aiohttp"] @@ -334 +336,0 @@ tensorflow_gpu = ["tensorflow-gpu (>=2.2.0)"] -tests = ["absl-py", "pytest", "pytest-xdist", "aiohttp", "apache-beam (>=2.26.0)", "elasticsearch", "aiobotocore (==1.2.2)", "boto3 (==1.16.43)", "botocore (==1.19.52)", "fsspec", "moto[server,s3] (==2.0.4)", "rarfile (>=4.0)", "s3fs", "tensorflow (>=2.3)", "torch", "transformers", "bs4", "conllu", "langdetect", "lxml", "mwparserfromhell", "nltk", "openpyxl", "py7zr", "tldextract", "zstandard", "bert-score (>=0.3.6)", "rouge-score", "sacrebleu", "scipy", "seqeval", "scikit-learn", "jiwer", "sentencepiece", "toml (>=0.10.1)", "requests-file (>=1.5.1)", "tldextract (>=3.1.0)", "texttable (>=1.6.3)", "Werkzeug (>=1.0.1)", "six (>=1.15.0,<1.16.0)", "importlib-resources"] @@ -335,0 +338,12 @@ torch = ["torch"] +s3 = ["fsspec", "boto3 (==1.16.43)", "botocore (==1.19.52)", "s3fs"] +streaming = ["aiohttp"] +tests = ["absl-py", "pytest", "pytest-xdist", "aiohttp", "apache-beam (>=2.26.0)", "elasticsearch", "aiobotocore (==1.2.2)", "boto3 (==1.16.43)", "botocore (==1.19.52)", "faiss-cpu", "fsspec", "moto[server,s3] (==2.0.4)", "rarfile (>=4.0)", "s3fs", "tensorflow (>=2.3)", "torch", "transformers", "bs4", "conllu", "langdetect", "lxml", "mwparserfromhell", "nltk", "openpyxl", "py7zr", "tldextract", "zstandard", "bert_score (>=0.3.6)", "rouge-score", "sacrebleu", "scipy", "seqeval", "scikit-learn", "jiwer", "sentencepiece", "toml (>=0.10.1)", "requests_file (>=1.5.1)", "tldextract (>=3.1.0)", "texttable (>=1.6.3)", "Werkzeug (>=1.0.1)", "six (>=1.15.0,<1.16.0)"] +quality = ["black (==21.4b0)", "flake8 (==3.7.9)", "isort", "pyyaml (>=5.3.1)"] +benchmarks = ["numpy (==1.18.5)", "tensorflow (==2.3.0)", "torch (==1.6.0)", "transformers (==3.0.2)"] +docs = ["docutils (==0.16.0)", "recommonmark", "sphinx (==3.1.2)", "sphinx-markdown-tables", "sphinx-rtd-theme (==0.4.3)", "sphinxext-opengraph (==0.4.1)", "sphinx-copybutton", "fsspec", "s3fs"] + +[package.source] +type = "git" +url = "https://github.com/huggingface/datasets.git" +reference = "b9fb8b2567aecfb14ad0bc31b59329f573eb35df" +resolved_reference = "b9fb8b2567aecfb14ad0bc31b59329f573eb35df" @@ -437 +451 @@ name = "google-auth" -version = "1.34.0" +version = "1.35.0" @@ -482 +496 @@ name = "grpcio" -version = "1.34.1" +version = "1.39.0" @@ -492 +506 @@ six = ">=1.5.2" -protobuf = ["grpcio-tools (>=1.34.1)"] +protobuf = ["grpcio-tools (>=1.39.0)"] @@ -611,2 +625,2 @@ url = "https://github.com/kpu/kenlm/archive/master.zip" -name = "keras-nightly" -version = "2.5.0.dev2021032900" +name = "keras" +version = "2.6.0" @@ -637,2 +651,2 @@ name = "kss" -version = "2.5.1" -description = "Split Korean text into sentences using heuristic algorithm using pure python" +version = "2.6.0" +description = "Korean sentence splitter" @@ -846 +860 @@ name = "pandas" -version = "1.3.1" +version = "1.3.2" @@ -1015 +1029 @@ name = "pyppmd" -version = "0.15.2" +version = "0.16.1" @@ -1025 +1039 @@ fuzzer = ["atheris", "hypothesis"] -test = ["pytest", "pytest-benchmark", "pytest-cov", "psutil", "hypothesis", "coverage[toml] (>=5.2)"] +test = ["pytest (>=6.0)", "pytest-benchmark", "pytest-cov", "pytest-timeout", "hypothesis", "coverage[toml] (>=5.2)"] @@ -1085 +1099 @@ name = "regex" -version = "2021.7.6" +version = "2021.8.3" @@ -1182 +1196 @@ name = "tensorboard" -version = "2.5.0" +version = "2.6.0" @@ -1186 +1200 @@ optional = false -python-versions = ">= 2.7, != 3.0.*, != 3.1.*" +python-versions = ">=3.6" @@ -1219 +1233 @@ name = "tensorflow" -version = "2.5.0" +version = "2.6.0" @@ -1227,0 +1242 @@ astunparse = ">=1.6.3,<1.7.0" +clang = ">=5.0,<6.0" @@ -1231 +1246 @@ google-pasta = ">=0.2,<1.0" -grpcio = ">=1.34.0,<1.35.0" +grpcio = ">=1.37.0,<2.0" @@ -1233 +1248 @@ h5py = ">=3.1.0,<3.2.0" -keras-nightly = ">=2.5.0.dev,<2.6.0" +keras = ">=2.6,<3.0" @@ -1239,2 +1254,2 @@ six = ">=1.15.0,<1.16.0" -tensorboard = ">=2.5,<3.0" -tensorflow-estimator = ">=2.5.0rc0,<2.6.0" +tensorboard = ">=2.6,<3.0" +tensorflow-estimator = ">=2.6,<3.0" @@ -1247 +1262 @@ name = "tensorflow-estimator" -version = "2.5.0" +version = "2.6.0" @@ -1290 +1305 @@ name = "tomli" -version = "1.2.0" +version = "1.2.1" @@ -1298 +1313 @@ name = "tqdm" -version = "4.62.0" +version = "4.62.1" @@ -1314 +1329 @@ name = "transformers" -version = "4.9.1" +version = "4.9.2" @@ -1391 +1406 @@ name = "ujson" -version = "4.0.2" +version = "4.1.0" @@ -1490 +1505 @@ python-versions = "^3.8" -content-hash = "9ee62f3717c20b8179c7d81cb2e17f9c7487314611152c3ce14b470812d7fc80" +content-hash = "b19f9516833c7d7b59c4142dd1cb4137dbee62cb85391c0b578e26e61a69e9e1" @@ -1639,0 +1655,7 @@ brotli = [ + {file = "Brotli-1.0.9-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:9744a863b489c79a73aba014df554b0e7a0fc44ef3f8a0ef2a52919c7d155031"}, + {file = "Brotli-1.0.9-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:a72661af47119a80d82fa583b554095308d6a4c356b2a554fdc2799bc19f2a43"}, + {file = "Brotli-1.0.9-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:7ee83d3e3a024a9618e5be64648d6d11c37047ac48adff25f12fa4226cf23d1c"}, + {file = "Brotli-1.0.9-cp310-cp310-manylinux_2_5_i686.manylinux1_i686.manylinux_2_12_i686.manylinux2010_i686.whl", hash = "sha256:19598ecddd8a212aedb1ffa15763dd52a388518c4550e615aed88dc3753c0f0c"}, + {file = "Brotli-1.0.9-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl", hash = "sha256:44bb8ff420c1d19d91d79d8c3574b8954288bdff0273bf788954064d260d7ab0"}, + {file = "Brotli-1.0.9-cp310-cp310-win32.whl", hash = "sha256:26d168aac4aaec9a4394221240e8a5436b5634adc3cd1cdf637f6645cecbf181"}, + {file = "Brotli-1.0.9-cp310-cp310-win_amd64.whl", hash = "sha256:622a231b08899c864eb87e85f81c75e7b9ce05b001e59bbfbf43d4a71f5f32b2"}, @@ -1647,0 +1670 @@ brotli = [ + {file = "Brotli-1.0.9-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:87fdccbb6bb589095f413b1e05734ba492c962b4a45a13ff3408fa44ffe6479b"}, @@ -1652,0 +1676 @@ brotli = [ + {file = "Brotli-1.0.9-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:29d1d350178e5225397e28ea1b7aca3648fcbab546d20e7475805437bfb0a130"}, @@ -1654,0 +1679 @@ brotli = [ + {file = "Brotli-1.0.9-cp38-cp38-macosx_10_9_universal2.whl", hash = "sha256:e16eb9541f3dd1a3e92b89005e37b1257b157b7256df0e36bd7b33b50be73bcb"}, @@ -1657,0 +1683 @@ brotli = [ + {file = "Brotli-1.0.9-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:8a674ac10e0a87b683f4fa2b6fa41090edfd686a6524bd8dedbd6138b309175c"}, @@ -1659,0 +1686 @@ brotli = [ + {file = "Brotli-1.0.9-cp39-cp39-macosx_10_9_universal2.whl", hash = "sha256:2aad0e0baa04517741c9bb5b07586c642302e5fb3e75319cb62087bd0995ab19"}, @@ -1662,0 +1690 @@ brotli = [ + {file = 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f68bb960..ff60ac85 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -9 +8,0 @@ python = "^3.8" -datasets = {extras = ["streaming"], version = "^1.10.2"} @@ -26,0 +26,2 @@ nltk = "^3.6.2" +aiohttp = "^3.7.4" +datasets = {extras = ["streaming"], git = "https://github.com/huggingface/datasets.git", rev = "b9fb8b2567aecfb14ad0bc31b59329f573eb35df"} diff --git a/quality/test_datasets.py b/quality/test_datasets.py index 328cd43f..9aaf3a46 100644 --- a/quality/test_datasets.py +++ b/quality/test_datasets.py @@ -1 +1 @@ -from datasets import list_datasets +from datasets import list_datasets, disable_progress_bar @@ -9 +9 @@ logging.disable(logging.CRITICAL) - +disable_progress_bar() diff --git a/src/datasets_preview_backend/queries/rows.py b/src/datasets_preview_backend/queries/rows.py index 5b8589f6..38239276 100644 --- a/src/datasets_preview_backend/queries/rows.py +++ b/src/datasets_preview_backend/queries/rows.py @@ -16 +15,0 @@ from datasets_preview_backend.exceptions import ( - @@ -25,0 +25 @@ def extract_rows(dataset: str, config: str, split: str, num_rows: int): + rows = list(iterable_dataset.take(num_rows)) @@ -61 +60,0 @@ def extract_rows(dataset: str, config: str, split: str, num_rows: int): - rows = list(iterable_dataset.take(num_rows)) diff --git a/tests/queries/test_configs.py b/tests/queries/test_configs.py index f66f3dd1..ced98b6a 100644 --- a/tests/queries/test_configs.py +++ b/tests/queries/test_configs.py @@ -33,3 +32,0 @@ def test_script_error(): - # raises "ModuleNotFoundError: No module named 'datasets_modules.datasets.Test'", which should be caught and raised as DatasetBuilderScriptError - with pytest.raises(Status400Error): - get_configs("TimTreasure4/Test") @@ -50,0 +48,3 @@ def test_no_dataset_no_script(): + # raises "ModuleNotFoundError: No module named 'datasets_modules.datasets.Test'", which should be caught and raised as DatasetBuilderScriptError + with pytest.raises(Status404Error): + get_configs("TimTreasure4/Test") diff --git a/tests/queries/test_rows.py b/tests/queries/test_rows.py index 726c34f7..20f40836 100644 --- a/tests/queries/test_rows.py +++ b/tests/queries/test_rows.py @@ -47,0 +48,2 @@ def test_extract_unknown_config(): + with pytest.raises(Status404Error): + extract_rows("TimTreasure4/Test", None, "train", 100) @@ -55,5 +56,0 @@ def test_extract_unknown_split(): -def test_extract_bogus_dataset(): - with pytest.raises(Status400Error): - extract_rows("TimTreasure4/Test", None, "train", 100) - - diff --git a/tests/queries/test_splits.py b/tests/queries/test_splits.py index a2456575..fb598719 100644 --- a/tests/queries/test_splits.py +++ b/tests/queries/test_splits.py @@ -42,6 +41,0 @@ def test_get_splits(): -def test_no_splits(): - # Due to https://github.com/huggingface/datasets/issues/2743 - with pytest.raises(Status400Error): - get_splits("journalists_questions", "plain_text") - -
1a1fb17b2cc1739cafc8c25bdfb9744935acf3e9
Sylvain Lesage
2021-08-05T09:38:53
fix: 🐛 fix make arguments order
diff --git a/INSTALL.md b/INSTALL.md index 302ebf76..eea452ee 100644 --- a/INSTALL.md +++ b/INSTALL.md @@ -124 +124 @@ Launch the app with pm2: -PORT=8000 pm2 start --name datasets-preview-backend make -C /home/hf/datasets-preview-backend/ -- run +PORT=8000 pm2 start --name datasets-preview-backend make -- -C /home/hf/datasets-preview-backend/ run
1911009b401a9489543cdb92751a09aa7762b4b1
Sylvain Lesage
2021-08-04T14:59:59
docs: ✏️ update install instructions
diff --git a/INSTALL.md b/INSTALL.md index d91d60ea..302ebf76 100644 --- a/INSTALL.md +++ b/INSTALL.md @@ -16 +16,3 @@ pm2 logs -To deploy a new version of datasets-preview-backend, first update the code +To deploy a new version of datasets-preview-backend, first pause the monitor at https://betteruptime.com/team/14149/monitors/389098. + +Then update the code @@ -37,0 +40,2 @@ Check if the app is accessible at http://54.158.211.3/healthcheck. +Finally un-pause the monitor at https://betteruptime.com/team/14149/monitors/389098. + @@ -49 +53 @@ ipv4 (public): 54.158.211.3 -grafana: +Grafana: @@ -53,0 +58,4 @@ grafana: +BetterUptime: + +- https://betteruptime.com/team/14149/monitors/389098 + @@ -72,86 +79,0 @@ Configure nginx as a reverse-proxy to expose the application on the port 80: -/: 10 GB -/data: 100 GB - -ipv4: 172.30.0.73 -ipv6: fe80::1060:d6ff:feee:6d31 -ipv4 (public): 3.83.96.81 - -```` - -grafana: - -- https://grafana.huggingface.co/d/rYdddlPWk/node-exporter-full?orgId=2&refresh=1m&from=now-15m&to=now&var-DS_PROMETHEUS=HF%20Prometheus&var-job=node_exporter_metrics&var-node=tensorboard-launcher -- https://grafana.huggingface.co/d/gBtAotjMk/use-method?orgId=2&var-DS_PROMETHEUS=HF%20Prometheus&var-node=tensorboard-launcher - -## Install tensorboard-launcher on the machine - -Install packages, logged as `hf`: - -```bash -sudo apt install git-lfs nginx python-is-python3 -```` - -Also [install poetry](https://python-poetry.org/docs/master/#installation). - -Install tensorboard-launcher: - -```bash -cd -# See https://github.blog/2013-09-03-two-factor-authentication/#how-does-it-work-for-command-line-git for authentication -git clone https://github.com/huggingface/tensorboard-launcher.git -cd tensorboard-launcher -poetry install -``` - -Create a launcher script - -```bash -vi ~/launch.sh -``` - -```bash -#!/bin/bash -cd /home/hf/tensorboard-launcher/ -TBL_NGINX_BASE_PATH=/data/nginx/tensorboard TBL_MODELS_BASE_PATH=/data/models make run -``` - -```bash -chmod +x ~/launch.sh -``` - -Create a systemd service - -```bash -sudo vi /etc/systemd/system/tensorboard.service -``` - -``` -[Unit] -Description=Tensorboard Daemon -After=network-online.target - -[Service] -Type=simple - -User=hf -Group=hf -UMask=007 - -ExecStart=/home/hf/launch.sh -ExecStop=/bin/kill -9 $MAINPID - -Restart=on-failure - -# Configures the time to wait before service is stopped forcefully. -TimeoutStopSec=10 - -[Install] -WantedBy=multi-user.target -``` - -```bash -sudo systemctl enable tensorboard -``` - -Configure nginx - @@ -202 +124 @@ Launch the app with pm2: -PORT=8000 pm2 start --name datasets-preview-backend make -- -C /home/hf/datasets-preview-backend/ run +PORT=8000 pm2 start --name datasets-preview-backend make -C /home/hf/datasets-preview-backend/ -- run
2111daf36edbe63dd356dbdee40b8ee46a1dbedb
Sylvain Lesage
2021-08-03T14:24:28
docs: ✏️ format
diff --git a/README.md b/README.md index 30703066..4e2bd12e 100644 --- a/README.md +++ b/README.md @@ -51 +51 @@ make watch -Endpoint: `/healthcheck` +> Ensure the app is running @@ -55,2 +54,0 @@ Example: http://54.158.211.3/healthcheck -> Ensure the app is running - @@ -67 +65 @@ Responses: -Endpoint: `/configs` +> Lists the [configurations](https://huggingface.co/docs/datasets/loading_datasets.html#selecting-a-configuration) names for the dataset @@ -71,2 +68,0 @@ Example: http://54.158.211.3/configs?dataset=glue -> Lists the [configurations](https://huggingface.co/docs/datasets/loading_datasets.html#selecting-a-configuration) names for the dataset - @@ -109 +105 @@ Responses: -Endpoint: `/splits` +> Lists the [splits](https://huggingface.co/docs/datasets/splits.html) names for a dataset config @@ -113,2 +108,0 @@ Example: http://54.158.211.3/splits?dataset=glue&config=ax -> Lists the [splits](https://huggingface.co/docs/datasets/splits.html) names for a dataset config - @@ -140 +134 @@ Responses: -Endpoint: `/rows` +> Extract the first [rows](https://huggingface.co/docs/datasets/splits.html) for a split of a dataset config @@ -144,2 +137,0 @@ Example: http://54.158.211.3/rows?dataset=glue&config=ax&split=test&rows=2 -> Extract the first [rows](https://huggingface.co/docs/datasets/splits.html) for a split of a dataset config -
635a852608cfc287f67621aab4cc642c796cdef4
Sylvain Lesage
2021-08-03T14:22:56
docs: ✏️ formatting detail
diff --git a/README.md b/README.md index af514a51..30703066 100644 --- a/README.md +++ b/README.md @@ -49 +49 @@ make watch -### healthcheck +### /healthcheck @@ -65 +65 @@ Responses: -### configs +### /configs @@ -107 +107 @@ Responses: -### splits +### /splits @@ -138 +138 @@ Responses: -### rows +### /rows
4d3943e88b4d0f5bd3caf33ce4c719a42bca9a38
Sylvain Lesage
2021-08-03T14:21:46
docs: ✏️ add endpoints doc
diff --git a/README.md b/README.md index a0dc800b..af514a51 100644 --- a/README.md +++ b/README.md @@ -45,0 +46,138 @@ make watch + +## Endpoints + +### healthcheck + +Endpoint: `/healthcheck` + +Example: http://54.158.211.3/healthcheck + +> Ensure the app is running + +Method: `GET` + +Parameters: none + +Responses: + +- `200`: text content `ok` + +### configs + +Endpoint: `/configs` + +Example: http://54.158.211.3/configs?dataset=glue + +> Lists the [configurations](https://huggingface.co/docs/datasets/loading_datasets.html#selecting-a-configuration) names for the dataset + +Method: `GET` + +Parameters: + +- `dataset` (required): the dataset ID + +Responses: + +- `200`: JSON content with the following structure: + + ```json + { + "dataset": "glue", + "configs": [ + "cola", + "sst2", + "mrpc", + "qqp", + "stsb", + "mnli", + "mnli_mismatched", + "mnli_matched", + "qnli", + "rte", + "wnli", + "ax" + ] + } + ``` + +- `400`: the dataset script is erroneous +- `404`: the dataset cannot be found +- `500`: application error + +### splits + +Endpoint: `/splits` + +Example: http://54.158.211.3/splits?dataset=glue&config=ax + +> Lists the [splits](https://huggingface.co/docs/datasets/splits.html) names for a dataset config + +Method: `GET` + +Parameters: + +- `dataset` (required): the dataset ID +- `config`: the configuration name. It might be required, or not, depending on the dataset + +Responses: + +- `200`: JSON content with the following structure: + + ```json + { + "dataset": "glue", + "config": "ax", + "splits": ["test"] + } + ``` + +- `400`: the dataset script is erroneous +- `404`: the dataset or config cannot be found +- `500`: application error + +### rows + +Endpoint: `/rows` + +Example: http://54.158.211.3/rows?dataset=glue&config=ax&split=test&rows=2 + +> Extract the first [rows](https://huggingface.co/docs/datasets/splits.html) for a split of a dataset config + +Method: `GET` + +Parameters: + +- `dataset` (required): the dataset ID +- `config`: the configuration name. It might be required, or not, depending on the dataset +- `split` (required): the split name +- `rows`: the number of rows to extract. Defaults to 100. + +Responses: + +- `200`: JSON content with the following structure: + + ```json + { + "dataset": "glue", + "config": "ax", + "split": "test", + "rows": [ + { + "idx": 0, + "hypothesis": "The cat did not sit on the mat.", + "label": -1, + "premise": "The cat sat on the mat." + }, + { + "idx": 1, + "hypothesis": "The cat sat on the mat.", + "label": -1, + "premise": "The cat did not sit on the mat." + } + ] + } + ``` + +- `400`: the dataset script is erroneous, or the data cannot be obtained. +- `404`: the dataset, config or script cannot be found +- `500`: application error
f4e45983ffe6d978b970763d7afb20f7a8cc9213
Sylvain Lesage
2021-08-03T13:52:08
docs: ✏️ add install doc
diff --git a/INSTALL.md b/INSTALL.md new file mode 100644 index 00000000..d91d60ea --- /dev/null +++ b/INSTALL.md @@ -0,0 +1,212 @@ +# INSTALL + +datasets-preview-backend is installed on a virtual machine (ec2-54-158-211-3.compute-1.amazonaws.com). + +## Manage + +Use [pm2](https://pm2.keymetrics.io/docs/usage/quick-start/#cheatsheet) to manage the service. + +```bash +pm2 list +pm2 logs +``` + +## Upgrade + +To deploy a new version of datasets-preview-backend, first update the code + +``` +cd /home/hf/datasets-preview-backend/ +git fetch +git merge +``` + +Install packages + +``` +make install +``` + +Restart + +``` +pm2 restart all +``` + +Check if the app is accessible at http://54.158.211.3/healthcheck. + +## Machine + +```bash +ssh [email protected] + +/: 200 GB + +ipv4: 172.30.4.71 +ipv4 (public): 54.158.211.3 +``` + +grafana: + +- https://grafana.huggingface.co/d/gBtAotjMk/use-method?orgId=2&var-DS_PROMETHEUS=HF%20Prometheus&var-node=data-preview +- https://grafana.huggingface.co/d/rYdddlPWk/node-exporter-full?orgId=2&refresh=1m&var-DS_PROMETHEUS=HF%20Prometheus&var-job=node_exporter_metrics&var-node=data-preview&var-diskdevices=%5Ba-z%5D%2B%7Cnvme%5B0-9%5D%2Bn%5B0-9%5D%2B + +## Install + +Install packages, logged as `hf`: + +```bash +sudo apt install python-is-python3 make nginx +``` + +Also install node and npm (with [nvm](https://github.com/nvm-sh/nvm)), then: + +```bash +npm i -g pm2@latest +``` + +Also [install poetry](https://python-poetry.org/docs/master/#installation). Don't forget to add `poetry` to the `PATH` environment variable. + +Configure nginx as a reverse-proxy to expose the application on the port 80: + +/: 10 GB +/data: 100 GB + +ipv4: 172.30.0.73 +ipv6: fe80::1060:d6ff:feee:6d31 +ipv4 (public): 3.83.96.81 + +```` + +grafana: + +- https://grafana.huggingface.co/d/rYdddlPWk/node-exporter-full?orgId=2&refresh=1m&from=now-15m&to=now&var-DS_PROMETHEUS=HF%20Prometheus&var-job=node_exporter_metrics&var-node=tensorboard-launcher +- https://grafana.huggingface.co/d/gBtAotjMk/use-method?orgId=2&var-DS_PROMETHEUS=HF%20Prometheus&var-node=tensorboard-launcher + +## Install tensorboard-launcher on the machine + +Install packages, logged as `hf`: + +```bash +sudo apt install git-lfs nginx python-is-python3 +```` + +Also [install poetry](https://python-poetry.org/docs/master/#installation). + +Install tensorboard-launcher: + +```bash +cd +# See https://github.blog/2013-09-03-two-factor-authentication/#how-does-it-work-for-command-line-git for authentication +git clone https://github.com/huggingface/tensorboard-launcher.git +cd tensorboard-launcher +poetry install +``` + +Create a launcher script + +```bash +vi ~/launch.sh +``` + +```bash +#!/bin/bash +cd /home/hf/tensorboard-launcher/ +TBL_NGINX_BASE_PATH=/data/nginx/tensorboard TBL_MODELS_BASE_PATH=/data/models make run +``` + +```bash +chmod +x ~/launch.sh +``` + +Create a systemd service + +```bash +sudo vi /etc/systemd/system/tensorboard.service +``` + +``` +[Unit] +Description=Tensorboard Daemon +After=network-online.target + +[Service] +Type=simple + +User=hf +Group=hf +UMask=007 + +ExecStart=/home/hf/launch.sh +ExecStop=/bin/kill -9 $MAINPID + +Restart=on-failure + +# Configures the time to wait before service is stopped forcefully. +TimeoutStopSec=10 + +[Install] +WantedBy=multi-user.target +``` + +```bash +sudo systemctl enable tensorboard +``` + +Configure nginx + +```bash +sudo unlink /etc/nginx/sites-enabled/default +sudo vi /etc/nginx/sites-available/reverse-proxy.conf +``` + +```bash +server { + listen 80; + listen [::]:80; + + access_log /var/log/nginx/reverse-access.log; + error_log /var/log/nginx/reverse-error.log; + + location / { + proxy_pass http://localhost:8000/; + proxy_set_header Host $proxy_host; + proxy_set_header X-Real-IP $remote_addr; + proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for; + proxy_set_header X-Forwarded-Proto $scheme; + proxy_buffering off; + proxy_http_version 1.1; + } +} +``` + +```bash +sudo ln -s /etc/nginx/sites-available/reverse-proxy.conf /etc/nginx/sites-enabled/reverse-proxy.conf +sudo nginx -t # Test +sudo systemctl reload nginx +``` + +Install datasets-preview-backend: + +```bash +cd +# See https://github.blog/2013-09-03-two-factor-authentication/#how-does-it-work-for-command-line-git for authentication +git clone https://github.com/huggingface/datasets-preview-backend.git +cd datasets-preview-backend +make install +``` + +Launch the app with pm2: + +```bash +PORT=8000 pm2 start --name datasets-preview-backend make -- -C /home/hf/datasets-preview-backend/ run +``` + +Check if the app is accessible at http://54.158.211.3/healthcheck. + +Finally, ensure that pm2 will restart on reboot (see https://pm2.keymetrics.io/docs/usage/startup/): + +```bash +pm2 startup +# and follow the instructions +```
4a7c2e0196d6b92941379b0a7f0727a388203434
Sylvain Lesage
2021-08-03T13:42:34
chore: 🤖 don't expose the port on all the network interfaces
diff --git a/Makefile b/Makefile index a90ff370..93b177f8 100644 --- a/Makefile +++ b/Makefile @@ -9 +9 @@ run: - poetry run uvicorn --port $(PORT) --host 0.0.0.0 --factory datasets_preview_backend.main:app + poetry run uvicorn --port $(PORT) --factory datasets_preview_backend.main:app @@ -18 +18 @@ watch: - poetry run uvicorn --port $(PORT) --host 0.0.0.0 --factory --reload datasets_preview_backend.main:app + poetry run uvicorn --port $(PORT) --factory --reload datasets_preview_backend.main:app
5a831c0463f4a0cb2ffeda586b0b3d7e6e582275
Sylvain Lesage
2021-08-03T13:27:49
chore: 🤖 listen on all the network interfaces
diff --git a/Makefile b/Makefile index 93b177f8..a90ff370 100644 --- a/Makefile +++ b/Makefile @@ -9 +9 @@ run: - poetry run uvicorn --port $(PORT) --factory datasets_preview_backend.main:app + poetry run uvicorn --port $(PORT) --host 0.0.0.0 --factory datasets_preview_backend.main:app @@ -18 +18 @@ watch: - poetry run uvicorn --port $(PORT) --factory --reload datasets_preview_backend.main:app + poetry run uvicorn --port $(PORT) --host 0.0.0.0 --factory --reload datasets_preview_backend.main:app
5680728ed18f3eec6f4a9586c68bc526c8ff8198
Sylvain Lesage
2021-08-03T13:01:09
docs: ✏️ details in the readme
diff --git a/README.md b/README.md index e0b93c72..a0dc800b 100644 --- a/README.md +++ b/README.md @@ -14,0 +15,2 @@ The URL schema is `https://huggingface.co/datasets-preview/:datasetId/extract?ro +Install with: + @@ -16,2 +17,0 @@ The URL schema is `https://huggingface.co/datasets-preview/:datasetId/extract?ro -git clone [email protected]:huggingface/datasets-preview-backend.git -cd datasets-preview-backend @@ -22,0 +23,2 @@ make install +Launch with: + @@ -24 +25,0 @@ make install -cd datasets-preview-backend @@ -43 +43,0 @@ To reload the application on file changes while developing, run: -cd datasets-preview-backend
8122bbb0c58d9b1a141bb1cb94f1fe38d43443c0
Sylvain Lesage
2021-08-03T12:59:07
feat: 🎸 remove useless prefix `DPB_` to env variables
diff --git a/Makefile b/Makefile index f942b86d..93b177f8 100644 --- a/Makefile +++ b/Makefile @@ -1 +1 @@ -DPB_PORT ?= 8000 +PORT ?= 8000 @@ -9 +9 @@ run: - poetry run uvicorn --port $(DPB_PORT) --factory datasets_preview_backend.main:app + poetry run uvicorn --port $(PORT) --factory datasets_preview_backend.main:app @@ -18 +18 @@ watch: - poetry run uvicorn --port $(DPB_PORT) --factory --reload datasets_preview_backend.main:app + poetry run uvicorn --port $(PORT) --factory --reload datasets_preview_backend.main:app diff --git a/README.md b/README.md index 9d4bd617..e0b93c72 100644 --- a/README.md +++ b/README.md @@ -30,2 +30,3 @@ Set environment variables to configure the following aspects: -- `DPB_EXTRACT_ROWS_LIMIT`: maximum number of rows in the extract. Defaults to `100`. -- `DPB_PORT`: the port used by the app +- `EXTRACT_ROWS_LIMIT`: maximum number of rows in the extract. Defaults to `100`. +- `PORT`: the port used by the app. Defaults to `8000`. +- `WEB_CONCURRENCY`: the number of workers. Defaults to `1`. @@ -33 +34,7 @@ Set environment variables to configure the following aspects: -To restart the application on file changes while developing, run: +For example: + +```bash +PORT=80 WEB_CONCURRENCY=4 make run +``` + +To reload the application on file changes while developing, run: diff --git a/src/datasets_preview_backend/config.py b/src/datasets_preview_backend/config.py index 1018acc2..f07f1c64 100644 --- a/src/datasets_preview_backend/config.py +++ b/src/datasets_preview_backend/config.py @@ -8 +8 @@ DEFAULT_EXTRACT_ROWS_LIMIT = 100 -PORT = get_int_value(d=os.environ, key="DPB_PORT", default=DEFAULT_PORT) +PORT = get_int_value(d=os.environ, key="PORT", default=DEFAULT_PORT) @@ -10 +10 @@ EXTRACT_ROWS_LIMIT = get_int_value( - d=os.environ, key="DPB_EXTRACT_ROWS_LIMIT", default=DEFAULT_EXTRACT_ROWS_LIMIT + d=os.environ, key="EXTRACT_ROWS_LIMIT", default=DEFAULT_EXTRACT_ROWS_LIMIT
33289e0bc58a731281abd936327b1f795a2cf101
Sylvain Lesage
2021-08-03T12:54:45
chore: 🤖 call uvicorn from the command line
diff --git a/Makefile b/Makefile index b1d44a97..f942b86d 100644 --- a/Makefile +++ b/Makefile @@ -0,0 +1,2 @@ +DPB_PORT ?= 8000 + @@ -7 +9 @@ run: - poetry run python src/datasets_preview_backend/main.py + poetry run uvicorn --port $(DPB_PORT) --factory datasets_preview_backend.main:app @@ -16 +18 @@ watch: - poetry run watchmedo auto-restart -d src/datasets_preview_backend -p "*.py" -R python src/datasets_preview_backend/main.py + poetry run uvicorn --port $(DPB_PORT) --factory --reload datasets_preview_backend.main:app diff --git a/poetry.lock b/poetry.lock index b35f7d90..7a41abed 100644 --- a/poetry.lock +++ b/poetry.lock @@ -93,8 +92,0 @@ python-versions = "*" -[[package]] -name = "argh" -version = "0.26.2" -description = "An unobtrusive argparse wrapper with natural syntax" -category = "dev" -optional = false -python-versions = "*" - @@ -266 +258 @@ name = "charset-normalizer" -version = "2.0.3" +version = "2.0.4" @@ -335 +327 @@ benchmarks = ["numpy (==1.18.5)", "tensorflow (==2.3.0)", "torch (==1.6.0)", "tr -dev = ["absl-py", "pytest", "pytest-xdist", "aiohttp", "apache-beam (>=2.26.0)", "elasticsearch", "aiobotocore (==1.2.2)", "boto3 (==1.16.43)", "botocore (==1.19.52)", "fsspec", "moto[s3,server] (==2.0.4)", "rarfile (>=4.0)", "s3fs", "tensorflow (>=2.3)", "torch", "transformers", "bs4", "conllu", "langdetect", "lxml", "mwparserfromhell", "nltk", "openpyxl", "py7zr", "tldextract", "zstandard", "bert-score (>=0.3.6)", "rouge-score", "sacrebleu", "scipy", "seqeval", "scikit-learn", "jiwer", "sentencepiece", "toml (>=0.10.1)", "requests-file (>=1.5.1)", "tldextract (>=3.1.0)", "texttable (>=1.6.3)", "Werkzeug (>=1.0.1)", "six (>=1.15.0,<1.16.0)", "black (==21.4b0)", "flake8 (==3.7.9)", "isort", "pyyaml (>=5.3.1)", "importlib-resources"] +dev = ["absl-py", "pytest", "pytest-xdist", "aiohttp", "apache-beam (>=2.26.0)", "elasticsearch", "aiobotocore (==1.2.2)", "boto3 (==1.16.43)", "botocore (==1.19.52)", "fsspec", "moto[server,s3] (==2.0.4)", "rarfile (>=4.0)", "s3fs", "tensorflow (>=2.3)", "torch", "transformers", "bs4", "conllu", "langdetect", "lxml", "mwparserfromhell", "nltk", "openpyxl", "py7zr", "tldextract", "zstandard", "bert-score (>=0.3.6)", "rouge-score", "sacrebleu", "scipy", "seqeval", "scikit-learn", "jiwer", "sentencepiece", "toml (>=0.10.1)", "requests-file (>=1.5.1)", "tldextract (>=3.1.0)", "texttable (>=1.6.3)", "Werkzeug (>=1.0.1)", "six (>=1.15.0,<1.16.0)", "black (==21.4b0)", "flake8 (==3.7.9)", "isort", "pyyaml (>=5.3.1)", "importlib-resources"] @@ -342 +334 @@ tensorflow_gpu = ["tensorflow-gpu (>=2.2.0)"] -tests = ["absl-py", "pytest", "pytest-xdist", "aiohttp", "apache-beam (>=2.26.0)", "elasticsearch", "aiobotocore (==1.2.2)", "boto3 (==1.16.43)", "botocore (==1.19.52)", "fsspec", "moto[s3,server] (==2.0.4)", "rarfile (>=4.0)", "s3fs", "tensorflow (>=2.3)", "torch", "transformers", "bs4", "conllu", "langdetect", "lxml", "mwparserfromhell", "nltk", "openpyxl", "py7zr", "tldextract", "zstandard", "bert-score (>=0.3.6)", "rouge-score", "sacrebleu", "scipy", "seqeval", "scikit-learn", "jiwer", "sentencepiece", "toml (>=0.10.1)", "requests-file (>=1.5.1)", "tldextract (>=3.1.0)", "texttable (>=1.6.3)", "Werkzeug (>=1.0.1)", "six (>=1.15.0,<1.16.0)", "importlib-resources"] +tests = ["absl-py", "pytest", "pytest-xdist", "aiohttp", "apache-beam (>=2.26.0)", "elasticsearch", "aiobotocore (==1.2.2)", "boto3 (==1.16.43)", "botocore (==1.19.52)", "fsspec", "moto[server,s3] (==2.0.4)", "rarfile (>=4.0)", "s3fs", "tensorflow (>=2.3)", "torch", "transformers", "bs4", "conllu", "langdetect", "lxml", "mwparserfromhell", "nltk", "openpyxl", "py7zr", "tldextract", "zstandard", "bert-score (>=0.3.6)", "rouge-score", "sacrebleu", "scipy", "seqeval", "scikit-learn", "jiwer", "sentencepiece", "toml (>=0.10.1)", "requests-file (>=1.5.1)", "tldextract (>=3.1.0)", "texttable (>=1.6.3)", "Werkzeug (>=1.0.1)", "six (>=1.15.0,<1.16.0)", "importlib-resources"] @@ -464 +456 @@ name = "google-auth-oauthlib" -version = "0.4.4" +version = "0.4.5" @@ -618 +609,0 @@ url = "https://github.com/kpu/kenlm/archive/master.zip" - @@ -1299 +1290 @@ name = "tomli" -version = "1.1.0" +version = "1.2.0" @@ -1307 +1298 @@ name = "tqdm" -version = "4.61.2" +version = "4.62.0" @@ -1435,15 +1425,0 @@ standard = ["websockets (>=9.1)", "httptools (>=0.2.0,<0.3.0)", "watchgod (>=0.6 -[[package]] -name = "watchdog" -version = "2.1.3" -description = "Filesystem events monitoring" -category = "dev" -optional = false -python-versions = ">=3.6" - -[package.dependencies] -argh = {version = ">=0.24.1", optional = true, markers = "extra == \"watchmedo\""} -PyYAML = {version = ">=3.10", optional = true, markers = "extra == \"watchmedo\""} - -[package.extras] -watchmedo = ["PyYAML (>=3.10)", "argh (>=0.24.1)"] - @@ -1514 +1490 @@ python-versions = "^3.8" -content-hash = "7fe0a20f2baf129ea8c51856ced71768ff64d01e0c0bea829bdd25cd968c6d80" +content-hash = "9ee62f3717c20b8179c7d81cb2e17f9c7487314611152c3ce14b470812d7fc80" @@ -1592,4 +1567,0 @@ appdirs = [ -argh = [ - {file = "argh-0.26.2-py2.py3-none-any.whl", hash = "sha256:a9b3aaa1904eeb78e32394cd46c6f37ac0fb4af6dc488daa58971bdc7d7fcaf3"}, - {file = "argh-0.26.2.tar.gz", hash = "sha256:e9535b8c84dc9571a48999094fda7f33e63c3f1b74f3e5f3ac0105a58405bb65"}, -] @@ -1790,2 +1762,2 @@ charset-normalizer = [ - {file = "charset-normalizer-2.0.3.tar.gz", hash = "sha256:c46c3ace2d744cfbdebceaa3c19ae691f53ae621b39fd7570f59d14fb7f2fd12"}, - {file = "charset_normalizer-2.0.3-py3-none-any.whl", hash = "sha256:88fce3fa5b1a84fdcb3f603d889f723d1dd89b26059d0123ca435570e848d5e1"}, + {file = "charset-normalizer-2.0.4.tar.gz", hash = "sha256:f23667ebe1084be45f6ae0538e4a5a865206544097e4e8bbcacf42cd02a348f3"}, + {file = "charset_normalizer-2.0.4-py3-none-any.whl", hash = "sha256:0c8911edd15d19223366a194a513099a302055a962bca2cec0f54b8b63175d8b"}, @@ -1868,2 +1840,2 @@ google-auth-oauthlib = [ - {file = "google-auth-oauthlib-0.4.4.tar.gz", hash = "sha256:09832c6e75032f93818edf1affe4746121d640c625a5bef9b5c96af676e98eee"}, - {file = "google_auth_oauthlib-0.4.4-py2.py3-none-any.whl", hash = "sha256:0e92aacacfb94978de3b7972cf4b0f204c3cd206f74ddd0dc0b31e91164e6317"}, + {file = "google-auth-oauthlib-0.4.5.tar.gz", hash = "sha256:4ab58e6c3dc6ccf112f921fcced40e5426fba266768986ea502228488276eaba"}, + {file = "google_auth_oauthlib-0.4.5-py2.py3-none-any.whl", hash = "sha256:b5a1ce7c617d247ccb2dfbba9d4bfc734b41096803d854a2c52592ae80150a67"}, @@ -2711,2 +2683,2 @@ tomli = [ - {file = "tomli-1.1.0-py3-none-any.whl", hash = "sha256:f4a182048010e89cbec0ae4686b21f550a7f2903f665e34a6de58ec15424f919"}, - {file = "tomli-1.1.0.tar.gz", hash = "sha256:33d7984738f8bb699c9b0a816eb646a8178a69eaa792d258486776a5d21b8ca5"}, + {file = "tomli-1.2.0-py3-none-any.whl", hash = "sha256:056f0376bf5a6b182c513f9582c1e5b0487265eb6c48842b69aa9ca1cd5f640a"}, + {file = "tomli-1.2.0.tar.gz", hash = "sha256:d60e681734099207a6add7a10326bc2ddd1fdc36c1b0f547d00ef73ac63739c2"}, @@ -2715,2 +2687,2 @@ tqdm = [ - {file = "tqdm-4.61.2-py2.py3-none-any.whl", hash = "sha256:5aa445ea0ad8b16d82b15ab342de6b195a722d75fc1ef9934a46bba6feafbc64"}, - {file = "tqdm-4.61.2.tar.gz", hash = "sha256:8bb94db0d4468fea27d004a0f1d1c02da3cdedc00fe491c0de986b76a04d6b0a"}, + {file = "tqdm-4.62.0-py2.py3-none-any.whl", hash = "sha256:706dea48ee05ba16e936ee91cb3791cd2ea6da348a0e50b46863ff4363ff4340"}, + {file = "tqdm-4.62.0.tar.gz", hash = "sha256:3642d483b558eec80d3c831e23953582c34d7e4540db86d9e5ed9dad238dabc6"}, @@ -2759,23 +2730,0 @@ uvicorn = [ -watchdog = [ - 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{file = "watchdog-2.1.3-cp39-cp39-macosx_11_0_arm64.whl", hash = "sha256:0bcfe904c7d404eb6905f7106c54873503b442e8e918cc226e1828f498bdc0ca"}, - {file = "watchdog-2.1.3-pp36-pypy36_pp73-macosx_10_9_x86_64.whl", hash = "sha256:bf84bd94cbaad8f6b9cbaeef43080920f4cb0e61ad90af7106b3de402f5fe127"}, - {file = "watchdog-2.1.3-pp37-pypy37_pp73-macosx_10_9_x86_64.whl", hash = "sha256:b8ddb2c9f92e0c686ea77341dcb58216fa5ff7d5f992c7278ee8a392a06e86bb"}, - {file = "watchdog-2.1.3-py3-none-manylinux2014_aarch64.whl", hash = "sha256:8805a5f468862daf1e4f4447b0ccf3acaff626eaa57fbb46d7960d1cf09f2e6d"}, - {file = "watchdog-2.1.3-py3-none-manylinux2014_armv7l.whl", hash = "sha256:3e305ea2757f81d8ebd8559d1a944ed83e3ab1bdf68bcf16ec851b97c08dc035"}, - {file = "watchdog-2.1.3-py3-none-manylinux2014_i686.whl", hash = "sha256:431a3ea70b20962e6dee65f0eeecd768cd3085ea613ccb9b53c8969de9f6ebd2"}, - {file = "watchdog-2.1.3-py3-none-manylinux2014_ppc64.whl", hash = "sha256:e4929ac2aaa2e4f1a30a36751160be391911da463a8799460340901517298b13"}, - {file = "watchdog-2.1.3-py3-none-manylinux2014_ppc64le.whl", hash = "sha256:201cadf0b8c11922f54ec97482f95b2aafca429c4c3a4bb869a14f3c20c32686"}, - {file = "watchdog-2.1.3-py3-none-manylinux2014_s390x.whl", hash = "sha256:3a7d242a7963174684206093846537220ee37ba9986b824a326a8bb4ef329a33"}, - {file = "watchdog-2.1.3-py3-none-manylinux2014_x86_64.whl", hash = "sha256:54e057727dd18bd01a3060dbf5104eb5a495ca26316487e0f32a394fd5fe725a"}, - {file = "watchdog-2.1.3-py3-none-win32.whl", hash = "sha256:b5fc5c127bad6983eecf1ad117ab3418949f18af9c8758bd10158be3647298a9"}, - {file = "watchdog-2.1.3-py3-none-win_amd64.whl", hash = "sha256:44acad6f642996a2b50bb9ce4fb3730dde08f23e79e20cd3d8e2a2076b730381"}, - {file = "watchdog-2.1.3-py3-none-win_ia64.whl", hash = "sha256:0bcdf7b99b56a3ae069866c33d247c9994ffde91b620eaf0306b27e099bd1ae0"}, - {file = "watchdog-2.1.3.tar.gz", hash = "sha256:e5236a8e8602ab6db4b873664c2d356c365ab3cac96fbdec4970ad616415dd45"}, -] diff --git a/pyproject.toml b/pyproject.toml index 931c143d..f68bb960 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -30 +29,0 @@ black = "^21.7b0" -watchdog = {extras = ["watchmedo"], version = "^2.1.3"} diff --git a/src/datasets_preview_backend/main.py b/src/datasets_preview_backend/main.py index fc9ea1af..fc40dc76 100644 --- a/src/datasets_preview_backend/main.py +++ b/src/datasets_preview_backend/main.py @@ -9,2 +9,2 @@ from datasets_preview_backend.routes import healthcheck, rows, configs, splits -def start(): - app = Starlette( +def app(): + return Starlette( @@ -19,2 +18,0 @@ def start(): - uvicorn.run(app, host="0.0.0.0", port=PORT) - @@ -23 +21 @@ if __name__ == "__main__": - start() + uvicorn.run(app(), host="0.0.0.0", port=PORT)
fa22dfebb6edfa65bf9458042cefbb7951376c57
Sylvain Lesage
2021-08-02T16:31:02
feat: 🎸 log all errors
diff --git a/src/datasets_preview_backend/exceptions.py b/src/datasets_preview_backend/exceptions.py index adeeea48..1bbc4c10 100644 --- a/src/datasets_preview_backend/exceptions.py +++ b/src/datasets_preview_backend/exceptions.py @@ -12,2 +11,0 @@ class StatusError(Exception): - # TODO: log the traces on every caught exception - diff --git a/src/datasets_preview_backend/routes.py b/src/datasets_preview_backend/routes.py index b261ed76..8aa5da00 100644 --- a/src/datasets_preview_backend/routes.py +++ b/src/datasets_preview_backend/routes.py @@ -0,0 +1 @@ +import logging @@ -9,0 +11 @@ from datasets_preview_backend.exceptions import ( + StatusError, @@ -14,0 +17,6 @@ from datasets_preview_backend.exceptions import ( +def log_error(err: StatusError): + logging.debug( + f"Error {err.status_code} '{err.message}'. Caused by a {type(err.__cause__).__name__}: '{str(err.__cause__)}'" + ) + + @@ -29,0 +38 @@ async def configs(request: Request): + log_error(err) @@ -46,0 +56 @@ async def splits(request: Request): + log_error(err) @@ -71,0 +82 @@ async def rows(request: Request): + log_error(err)
cf6510a53401f9dfd8f7159845a0fabac3c58c73
Sylvain Lesage
2021-08-02T16:11:14
refactor: 💡 simplify the errors a lot
diff --git a/quality/test_datasets.py b/quality/test_datasets.py index 82fb3cda..328cd43f 100644 --- a/quality/test_datasets.py +++ b/quality/test_datasets.py @@ -24,0 +25,2 @@ def get_configs_report(dataset: str): + "cause": None, + "cause_message": None, @@ -31 +33 @@ def get_configs_report(dataset: str): - "exception": str(type(err).__name__), + "exception": type(err).__name__, @@ -32,0 +35,2 @@ def get_configs_report(dataset: str): + "cause": type(err.__cause__).__name__, + "cause_message": str(err.__cause__), @@ -45,0 +50,2 @@ def get_splits_report(dataset: str, config: str): + "cause": None, + "cause_message": None, @@ -53 +59 @@ def get_splits_report(dataset: str, config: str): - "exception": str(type(err).__name__), + "exception": type(err).__name__, @@ -54,0 +61,2 @@ def get_splits_report(dataset: str, config: str): + "cause": type(err.__cause__).__name__, + "cause_message": str(err.__cause__), @@ -69,0 +78,2 @@ def get_rows_report(dataset: str, config: str, split: str): + "cause": None, + "cause_message": None, @@ -77 +87 @@ def get_rows_report(dataset: str, config: str, split: str): - "exception": str(type(err).__name__), + "exception": type(err).__name__, @@ -78,0 +89,2 @@ def get_rows_report(dataset: str, config: str, split: str): + "cause": type(err.__cause__).__name__, + "cause_message": str(err.__cause__), diff --git a/src/datasets_preview_backend/exceptions.py b/src/datasets_preview_backend/exceptions.py index 646e37f4..adeeea48 100644 --- a/src/datasets_preview_backend/exceptions.py +++ b/src/datasets_preview_backend/exceptions.py @@ -8 +8 @@ def print_config(config): -class Error(Exception): +class StatusError(Exception): @@ -11,57 +11,2 @@ class Error(Exception): - def __init__(self, message): - self.message = message - super().__init__(message) - - -class DatasetBuilderScriptError(Error): - """Exception raised if the dataset script fails. - - Attributes: - dataset -- the erroneous dataset id - """ - - def __init__(self, dataset): - self.dataset = dataset - super().__init__(f"Dataset builder script error. Dataset: '{self.dataset}'") - - -class DatasetBuilderNotFoundError(Error): - """Exception raised if the dataset script could not be found. - - Attributes: - dataset -- the erroneous dataset id - """ - - def __init__(self, dataset): - self.dataset = dataset - super().__init__( - f"Dataset builder script could not be found. Dataset: '{self.dataset}'" - ) - - -class DatasetBuilderNoSplitsError(Error): - """Exception raised if the builder script fails to provide the list of splits. - - Attributes: - dataset -- the erroneous dataset id - config -- the erroneous dataset config name - """ - - def __init__(self, dataset, config): - self.dataset = dataset - self.config = config - super().__init__( - f"Dataset builder script error: could not get the list of splits. Dataset: '{self.dataset}', config: {print_config(self.config)}" - ) - - -class DatasetNotFoundError(Error): - """Exception raised if a dataset has not been found. - - Attributes: - dataset -- the erroneous dataset id - """ - - def __init__(self, dataset): - self.dataset = dataset - super().__init__(f"Dataset not found. Dataset: '{self.dataset}'") + def __init__(self, message, status_code): + # TODO: log the traces on every caught exception @@ -69,15 +14,3 @@ class DatasetNotFoundError(Error): - -class ConfigNotFoundError(Error): - """Exception raised for config builder not found. - - Attributes: - dataset -- the erroneous dataset id - config -- the erroneous dataset config name - """ - - def __init__(self, dataset, config): - self.dataset = dataset - self.config = config - super().__init__( - f"Config not found. Dataset: '{self.dataset}', config: {print_config(self.config)}" - ) + self.message = message + self.status_code = status_code + super().__init__(self.message) @@ -86,2 +19,2 @@ class ConfigNotFoundError(Error): -class SplitError(Error): - """Exception raised for errors in the split. +class Status400Error(StatusError): + """Exception raised if the response must be a 400 status code. @@ -90,3 +23 @@ class SplitError(Error): - dataset -- the erroneous dataset id - config -- the erroneous dataset config name - split -- the erroneous dataset split name + message -- the content of the response @@ -95,7 +26,2 @@ class SplitError(Error): - def __init__(self, dataset, config, split): - self.dataset = dataset - self.config = config - self.split = split - super().__init__( - f"Split error. Dataset: '{self.dataset}', config: {print_config(self.config)}, split: '{self.split}'" - ) + def __init__(self, message): + super().__init__(message, 400) @@ -104,2 +30,2 @@ class SplitError(Error): -class SplitNotImplementedError(Error): - """Exception raised for NotImplementedError in the split. +class Status404Error(StatusError): + """Exception raised if the response must be a 404 status code. @@ -108,4 +34 @@ class SplitNotImplementedError(Error): - dataset -- the erroneous dataset id - config -- the erroneous dataset config name - split -- the erroneous dataset split name - extension -- the file extension not implemented yet + message -- the content of the response @@ -114,11 +37,2 @@ class SplitNotImplementedError(Error): - def __init__(self, dataset, config, split, extension): - self.dataset = dataset - self.config = config - self.split = split - self.extension = extension - extension_str = ( - "" if self.extension is None else f" for extension '{self.extension}'" - ) - super().__init__( - f"Extraction protocol not implemented{extension_str}. Dataset: '{self.dataset}', config: {print_config(self.config)}, split: '{self.split}'" - ) + def __init__(self, message): + super().__init__(message, 404) diff --git a/src/datasets_preview_backend/queries/configs.py b/src/datasets_preview_backend/queries/configs.py index e267728b..d3b41780 100644 --- a/src/datasets_preview_backend/queries/configs.py +++ b/src/datasets_preview_backend/queries/configs.py @@ -11,2 +11,2 @@ from datasets_preview_backend.exceptions import ( - DatasetBuilderScriptError, - DatasetBuilderNotFoundError, + Status400Error, + Status404Error, @@ -15,2 +14,0 @@ from datasets_preview_backend.exceptions import ( -# TODO: log the traces on every caught exception - @@ -23,3 +21,5 @@ def get_configs(dataset: str) -> List[str]: - raise DatasetBuilderNotFoundError(dataset=dataset) - except (ModuleNotFoundError): - raise DatasetBuilderScriptError(dataset=dataset) + raise Status404Error("The dataset could not be found.") from err + except Exception as err: + raise Status400Error( + "The config names could not be parsed from the dataset." + ) from err diff --git a/src/datasets_preview_backend/queries/rows.py b/src/datasets_preview_backend/queries/rows.py index 232b42fb..5b8589f6 100644 --- a/src/datasets_preview_backend/queries/rows.py +++ b/src/datasets_preview_backend/queries/rows.py @@ -12,5 +12,2 @@ from datasets_preview_backend.exceptions import ( - DatasetBuilderScriptError, - DatasetNotFoundError, - ConfigNotFoundError, - SplitError, - SplitNotImplementedError, + Status400Error, + Status404Error, @@ -19,2 +15,0 @@ from datasets_preview_backend.exceptions import ( -# TODO: log the traces on every caught exception - @@ -32 +27,3 @@ def extract_rows(dataset: str, config: str, split: str, num_rows: int): - raise DatasetNotFoundError(dataset=dataset) + raise Status404Error( + "The split for the dataset config could not be found." + ) from err @@ -41,7 +38,7 @@ def extract_rows(dataset: str, config: str, split: str, num_rows: int): - extension = None - raise SplitNotImplementedError( - dataset=dataset, - config=config, - split=split, - extension=extension, - ) + raise Status400Error( + "The rows could not be extracted from the split of the dataset config." + ) from err + else: + raise Status400Error( + f"The rows could not be extracted from the split of the dataset config because extension {extension} is not supported." + ) from err @@ -49,7 +46,4 @@ def extract_rows(dataset: str, config: str, split: str, num_rows: int): - message = str(err) - if message.startswith(f"BuilderConfig {config} not found"): - raise ConfigNotFoundError(dataset=dataset, config=config) - elif message.startswith(f"Config name is missing."): - raise ConfigNotFoundError(dataset=dataset, config=config) - elif message.startswith(f'Unknown split "{split}".') or message.startswith( - f"Bad split: {split}." + if ( + str(err).startswith(f"BuilderConfig {config} not found.") + or str(err).startswith(f"Config name is missing.") + or str(err).startswith(f"Bad split") @@ -57 +51 @@ def extract_rows(dataset: str, config: str, split: str, num_rows: int): - raise SplitError(dataset=dataset, config=config, split=split) + raise Status404Error("The dataset config could not be found.") from err @@ -59,3 +53,7 @@ def extract_rows(dataset: str, config: str, split: str, num_rows: int): - raise - except (ModuleNotFoundError, RuntimeError, TypeError): - raise DatasetBuilderScriptError(dataset=dataset) + raise Status400Error( + "The rows could not be extracted from the split of the dataset config." + ) from err + except Exception as err: + raise Status400Error( + "The rows could not be extracted from the split of the dataset config." + ) from err diff --git a/src/datasets_preview_backend/queries/splits.py b/src/datasets_preview_backend/queries/splits.py index dbe186f1..7ede618f 100644 --- a/src/datasets_preview_backend/queries/splits.py +++ b/src/datasets_preview_backend/queries/splits.py @@ -3,3 +3 @@ from typing import List -from datasets import ( - load_dataset_builder, -) +from datasets import load_dataset_builder @@ -9,3 +7,2 @@ from datasets_preview_backend.exceptions import ( - DatasetBuilderScriptError, - DatasetBuilderNoSplitsError, - ConfigNotFoundError, + Status400Error, + Status404Error, @@ -14,2 +10,0 @@ from datasets_preview_backend.exceptions import ( -# TODO: log the traces on every caught exception - @@ -19,0 +15,2 @@ def get_splits(dataset: str, config: str) -> List[str]: + except FileNotFoundError as err: + raise Status404Error("The dataset config could not be found.") from err @@ -21,5 +18,2 @@ def get_splits(dataset: str, config: str) -> List[str]: - message = str(err) - if message.startswith(f"BuilderConfig {config} not found"): - raise ConfigNotFoundError(dataset=dataset, config=config) - elif message.startswith(f"Config name is missing."): - raise ConfigNotFoundError(dataset=dataset, config=config) + if str(err).startswith(f"BuilderConfig {config} not found."): + raise Status404Error("The dataset config could not be found.") from err @@ -27,3 +21,7 @@ def get_splits(dataset: str, config: str) -> List[str]: - raise - except (ModuleNotFoundError, RuntimeError, TypeError): - raise DatasetBuilderScriptError(dataset=dataset) + raise Status400Error( + "The split names could not be parsed from the dataset config." + ) from err + except Exception as err: + raise Status400Error( + "The split names could not be parsed from the dataset config." + ) from err @@ -32,0 +31 @@ def get_splits(dataset: str, config: str) -> List[str]: + # should not be necessary once https://github.com/huggingface/datasets/issues/2743 is fixed @@ -40,2 +39,4 @@ def get_splits(dataset: str, config: str) -> List[str]: - except: - raise DatasetBuilderNoSplitsError(dataset=dataset, config=config) + except Exception as err: + raise Status400Error( + "The split names could not be parsed from the dataset config." + ) from err diff --git a/src/datasets_preview_backend/routes.py b/src/datasets_preview_backend/routes.py index a5b3898e..b261ed76 100644 --- a/src/datasets_preview_backend/routes.py +++ b/src/datasets_preview_backend/routes.py @@ -10,7 +10,2 @@ from datasets_preview_backend.exceptions import ( - DatasetBuilderScriptError, - DatasetBuilderNotFoundError, - DatasetBuilderNoSplitsError, - DatasetNotFoundError, - ConfigNotFoundError, - SplitError, - SplitNotImplementedError, + Status400Error, + Status404Error, @@ -24 +19 @@ async def healthcheck(_: Request): -async def rows(request: Request): +async def configs(request: Request): @@ -26,5 +20,0 @@ async def rows(request: Request): - config: str = request.query_params.get("config") - split: str = request.query_params.get("split") - num_rows = get_int_value( - d=request.query_params, key="rows", default=EXTRACT_ROWS_LIMIT - ) @@ -36,5 +25,0 @@ async def rows(request: Request): - # note: config_name must not be set to refer to the None config_name (the majority of datasets). - if split is None: - return PlainTextResponse( - "'split' is a required query parameter.", status_code=400 - ) @@ -43,9 +28,3 @@ async def rows(request: Request): - return JSONResponse(extract_rows(dataset, config, split, num_rows)) - except (DatasetNotFoundError, ConfigNotFoundError) as err: - return PlainTextResponse(err.message, status_code=404) - except ( - DatasetBuilderScriptError, - SplitError, - SplitNotImplementedError, - ) as err: - return PlainTextResponse(err.message, status_code=400) + return JSONResponse(get_configs(dataset)) + except (Status400Error, Status404Error) as err: + return PlainTextResponse(err.message, status_code=err.status_code) @@ -55 +34 @@ async def rows(request: Request): -async def configs(request: Request): +async def splits(request: Request): @@ -56,0 +36 @@ async def configs(request: Request): + config: str = request.query_params.get("config") @@ -61,0 +42 @@ async def configs(request: Request): + # note: config_name must not be set to refer to the None config_name (the majority of datasets). @@ -64,5 +45,3 @@ async def configs(request: Request): - return JSONResponse(get_configs(dataset)) - except (DatasetBuilderNotFoundError) as err: - return PlainTextResponse(err.message, status_code=404) - except (DatasetBuilderScriptError,) as err: - return PlainTextResponse(err.message, status_code=400) + return JSONResponse(get_splits(dataset, config)) + except (Status400Error, Status404Error) as err: + return PlainTextResponse(err.message, status_code=err.status_code) @@ -72 +51 @@ async def configs(request: Request): -async def splits(request: Request): +async def rows(request: Request): @@ -74,0 +54,4 @@ async def splits(request: Request): + split: str = request.query_params.get("split") + num_rows = get_int_value( + d=request.query_params, key="rows", default=EXTRACT_ROWS_LIMIT + ) @@ -80,0 +64,4 @@ async def splits(request: Request): + if split is None: + return PlainTextResponse( + "'split' is a required query parameter.", status_code=400 + ) @@ -83,5 +70,3 @@ async def splits(request: Request): - return JSONResponse(get_splits(dataset, config)) - except (ConfigNotFoundError) as err: - return PlainTextResponse(err.message, status_code=404) - except (DatasetBuilderScriptError, DatasetBuilderNoSplitsError) as err: - return PlainTextResponse(err.message, status_code=400) + return JSONResponse(extract_rows(dataset, config, split, num_rows)) + except (Status400Error, Status404Error) as err: + return PlainTextResponse(err.message, status_code=err.status_code) diff --git a/tests/queries/test_configs.py b/tests/queries/test_configs.py index e7aa3352..f66f3dd1 100644 --- a/tests/queries/test_configs.py +++ b/tests/queries/test_configs.py @@ -4,0 +5,2 @@ from datasets_preview_backend.queries.configs import ( + Status400Error, + Status404Error, @@ -6,2 +7,0 @@ from datasets_preview_backend.queries.configs import ( - DatasetBuilderScriptError, - DatasetBuilderNotFoundError, @@ -32,6 +31,0 @@ def test_import_nltk(): -def test_import_nltk(): - # requires the nltk dependency - configs = get_configs("vershasaxena91/squad_multitask")["configs"] - assert len(configs) == 3 - - @@ -40 +34 @@ def test_script_error(): - with pytest.raises(DatasetBuilderScriptError): + with pytest.raises(Status400Error): @@ -43 +37 @@ def test_script_error(): - with pytest.raises(DatasetBuilderScriptError): + with pytest.raises(Status400Error): @@ -46,0 +41,6 @@ def test_script_error(): +def test_no_dataset(): + # the dataset does not exist + with pytest.raises(Status404Error): + get_configs("doesnotexist") + + @@ -49 +49 @@ def test_no_dataset_no_script(): - with pytest.raises(DatasetBuilderNotFoundError): + with pytest.raises(Status404Error): @@ -55 +55 @@ def test_no_dataset_bad_script_name(): - with pytest.raises(DatasetBuilderNotFoundError): + with pytest.raises(Status404Error): diff --git a/tests/queries/test_rows.py b/tests/queries/test_rows.py index 6f393242..726c34f7 100644 --- a/tests/queries/test_rows.py +++ b/tests/queries/test_rows.py @@ -4,5 +4,2 @@ from datasets_preview_backend.queries.rows import ( - DatasetBuilderScriptError, - ConfigNotFoundError, - DatasetNotFoundError, - SplitError, - SplitNotImplementedError, + Status400Error, + Status404Error, @@ -38,0 +36,7 @@ def test_extract_split_rows_num_rows(): +def test_extract_unknown_dataset(): + with pytest.raises(Status404Error): + extract_rows("doesnotexist", None, "train", 100) + with pytest.raises(Status404Error): + extract_rows("AConsApart/anime_subtitles_DialoGPT", None, "train", 100) + + @@ -40 +44 @@ def test_extract_unknown_config(): - with pytest.raises(ConfigNotFoundError): + with pytest.raises(Status404Error): @@ -42 +46 @@ def test_extract_unknown_config(): - with pytest.raises(ConfigNotFoundError): + with pytest.raises(Status404Error): @@ -47 +51 @@ def test_extract_unknown_split(): - with pytest.raises(SplitError): + with pytest.raises(Status404Error): @@ -51,7 +54,0 @@ def test_extract_unknown_split(): -def test_extract_unknown_dataset(): - with pytest.raises(DatasetNotFoundError): - extract_rows("doesnotexist", None, "train", 100) - with pytest.raises(DatasetNotFoundError): - extract_rows("AConsApart/anime_subtitles_DialoGPT", None, "train", 100) - - @@ -59 +56 @@ def test_extract_bogus_dataset(): - with pytest.raises(DatasetBuilderScriptError): + with pytest.raises(Status400Error): @@ -64 +61 @@ def test_extract_bogus_config(): - with pytest.raises(DatasetBuilderScriptError): + with pytest.raises(Status400Error): @@ -66 +63 @@ def test_extract_bogus_config(): - with pytest.raises(DatasetBuilderScriptError): + with pytest.raises(Status400Error): @@ -71 +68 @@ def test_extract_not_implemented_split(): - with pytest.raises(SplitNotImplementedError): + with pytest.raises(Status400Error): @@ -76 +73 @@ def test_tar_gz_extension(): - with pytest.raises(SplitNotImplementedError): + with pytest.raises(Status400Error): diff --git a/tests/queries/test_splits.py b/tests/queries/test_splits.py index bb1ff982..a2456575 100644 --- a/tests/queries/test_splits.py +++ b/tests/queries/test_splits.py @@ -4 +4,2 @@ from datasets_preview_backend.queries.splits import ( - DatasetBuilderNoSplitsError, + Status400Error, + Status404Error, @@ -27 +28 @@ def test_get_splits(): - # uses the fallback to call "builder._split_generators" + # uses the fallback to call "builder._split_generators" while https://github.com/huggingface/datasets/issues/2743 @@ -41,3 +42,3 @@ def test_get_splits(): -def test_extract_bogus_splits(): - # not sure if we have an example of such an error - with pytest.raises(DatasetBuilderNoSplitsError): +def test_no_splits(): + # Due to https://github.com/huggingface/datasets/issues/2743 + with pytest.raises(Status400Error): @@ -44,0 +46,16 @@ def test_extract_bogus_splits(): + + +def test_builder_config_error(): + with pytest.raises(Status400Error): + get_splits("KETI-AIR/nikl", "spoken.v1.0") + with pytest.raises(Status400Error): + get_splits("nateraw/image-folder", None) + with pytest.raises(Status400Error): + get_splits("Valahaar/wsdmt", None) + + +def test_not_found(): + with pytest.raises(Status404Error): + get_splits("doesnotexist", None) + with pytest.raises(Status404Error): + get_splits("glue", "doesnotexist")
792fa4d99b4440c57e1cf0394788b735c9a6ffb4
Sylvain Lesage
2021-08-02T09:20:54
test: 💍 add tests for all known errors in get_configs
diff --git a/src/datasets_preview_backend/exceptions.py b/src/datasets_preview_backend/exceptions.py index 2dbf6a7e..646e37f4 100644 --- a/src/datasets_preview_backend/exceptions.py +++ b/src/datasets_preview_backend/exceptions.py @@ -27,0 +28,14 @@ class DatasetBuilderScriptError(Error): +class DatasetBuilderNotFoundError(Error): + """Exception raised if the dataset script could not be found. + + Attributes: + dataset -- the erroneous dataset id + """ + + def __init__(self, dataset): + self.dataset = dataset + super().__init__( + f"Dataset builder script could not be found. Dataset: '{self.dataset}'" + ) + + diff --git a/src/datasets_preview_backend/queries/configs.py b/src/datasets_preview_backend/queries/configs.py index 93bac93f..e267728b 100644 --- a/src/datasets_preview_backend/queries/configs.py +++ b/src/datasets_preview_backend/queries/configs.py @@ -12 +12 @@ from datasets_preview_backend.exceptions import ( - DatasetNotFoundError, + DatasetBuilderNotFoundError, @@ -23 +23 @@ def get_configs(dataset: str) -> List[str]: - raise DatasetNotFoundError(dataset=dataset) + raise DatasetBuilderNotFoundError(dataset=dataset) diff --git a/src/datasets_preview_backend/routes.py b/src/datasets_preview_backend/routes.py index 0f9f3c59..a5b3898e 100644 --- a/src/datasets_preview_backend/routes.py +++ b/src/datasets_preview_backend/routes.py @@ -10,0 +11 @@ from datasets_preview_backend.exceptions import ( + DatasetBuilderNotFoundError, @@ -64 +65 @@ async def configs(request: Request): - except (DatasetNotFoundError) as err: + except (DatasetBuilderNotFoundError) as err: diff --git a/tests/queries/test_configs.py b/tests/queries/test_configs.py index 54f66341..e7aa3352 100644 --- a/tests/queries/test_configs.py +++ b/tests/queries/test_configs.py @@ -0,0 +1,3 @@ +import pytest + + @@ -2,0 +6,2 @@ from datasets_preview_backend.queries.configs import ( + DatasetBuilderScriptError, + DatasetBuilderNotFoundError, @@ -24,0 +30,27 @@ def test_import_nltk(): + + +def test_import_nltk(): + # requires the nltk dependency + configs = get_configs("vershasaxena91/squad_multitask")["configs"] + assert len(configs) == 3 + + +def test_script_error(): + # raises "ModuleNotFoundError: No module named 'datasets_modules.datasets.Test'", which should be caught and raised as DatasetBuilderScriptError + with pytest.raises(DatasetBuilderScriptError): + get_configs("TimTreasure4/Test") + # raises "ModuleNotFoundError: No module named 'datasets_modules.datasets.br-quad-2'", which should be caught and raised as DatasetBuilderScriptError + with pytest.raises(DatasetBuilderScriptError): + get_configs("piEsposito/br-quad-2.0") + + +def test_no_dataset_no_script(): + # the dataset does not contain a script + with pytest.raises(DatasetBuilderNotFoundError): + get_configs("AConsApart/anime_subtitles_DialoGPT") + + +def test_no_dataset_bad_script_name(): + # the dataset script name is incorrect + with pytest.raises(DatasetBuilderNotFoundError): + get_configs("Cropinky/rap_lyrics_english")
af9151393b8c9ce334b6e9f6a666cb2a19ae03e7
Sylvain Lesage
2021-08-02T09:01:46
refactor: 💡 split queries.py into three files
diff --git a/quality/test_datasets.py b/quality/test_datasets.py index efa800f1..82fb3cda 100644 --- a/quality/test_datasets.py +++ b/quality/test_datasets.py @@ -11,5 +11,3 @@ logging.disable(logging.CRITICAL) -from datasets_preview_backend.queries import ( - get_configs, - get_splits, - extract_rows, -) +from datasets_preview_backend.queries.configs import get_configs +from datasets_preview_backend.queries.splits import get_splits +from datasets_preview_backend.queries.rows import extract_rows diff --git a/src/datasets_preview_backend/queries/configs.py b/src/datasets_preview_backend/queries/configs.py new file mode 100644 index 00000000..93bac93f --- /dev/null +++ b/src/datasets_preview_backend/queries/configs.py @@ -0,0 +1,29 @@ +import logging + +from typing import List + +from datasets import ( + prepare_module, + import_main_class, +) + +from datasets_preview_backend.exceptions import ( + DatasetBuilderScriptError, + DatasetNotFoundError, +) + +# TODO: log the traces on every caught exception + + +def get_configs(dataset: str) -> List[str]: + try: + module_path, *_ = prepare_module(dataset, dataset=True) + builder_cls = import_main_class(module_path, dataset=True) + except FileNotFoundError as err: + raise DatasetNotFoundError(dataset=dataset) + except (ModuleNotFoundError): + raise DatasetBuilderScriptError(dataset=dataset) + + configs = [c.name for c in builder_cls.BUILDER_CONFIGS] or [None] + logging.debug(f"The dataset builder has {len(configs)} configs: {configs}") + return {"dataset": dataset, "configs": configs} diff --git a/src/datasets_preview_backend/queries.py b/src/datasets_preview_backend/queries/rows.py similarity index 55% rename from src/datasets_preview_backend/queries.py rename to src/datasets_preview_backend/queries/rows.py index 10c973f3..232b42fb 100644 --- a/src/datasets_preview_backend/queries.py +++ b/src/datasets_preview_backend/queries/rows.py @@ -9,3 +8,0 @@ from datasets import ( - load_dataset_builder, - prepare_module, - import_main_class, @@ -13 +9,0 @@ from datasets import ( -from datasets.utils.streaming_download_manager import StreamingDownloadManager @@ -17 +12,0 @@ from datasets_preview_backend.exceptions import ( - DatasetBuilderNoSplitsError, @@ -27,44 +21,0 @@ from datasets_preview_backend.exceptions import ( -def get_configs(dataset: str) -> List[str]: - try: - module_path, *_ = prepare_module(dataset, dataset=True) - builder_cls = import_main_class(module_path, dataset=True) - except FileNotFoundError as err: - raise DatasetNotFoundError(dataset=dataset) - except (ModuleNotFoundError): - raise DatasetBuilderScriptError(dataset=dataset) - - configs = [c.name for c in builder_cls.BUILDER_CONFIGS] or [None] - logging.debug(f"The dataset builder has {len(configs)} configs: {configs}") - return {"dataset": dataset, "configs": configs} - - -def get_splits(dataset: str, config: str) -> List[str]: - try: - builder = load_dataset_builder(dataset, name=config) - except ValueError as err: - message = str(err) - if message.startswith(f"BuilderConfig {config} not found"): - raise ConfigNotFoundError(dataset=dataset, config=config) - elif message.startswith(f"Config name is missing."): - raise ConfigNotFoundError(dataset=dataset, config=config) - else: - raise - except (ModuleNotFoundError, RuntimeError, TypeError): - raise DatasetBuilderScriptError(dataset=dataset) - - if builder.info.splits is None: - # try to get them from _split_generators - try: - splits = [ - split_generator.name - for split_generator in builder._split_generators( - StreamingDownloadManager(base_path=builder.base_path) - ) - ] - except: - raise DatasetBuilderNoSplitsError(dataset=dataset, config=config) - else: - splits = list(builder.info.splits.keys()) - return {"dataset": dataset, "config": config, "splits": splits} - - diff --git a/src/datasets_preview_backend/queries/splits.py b/src/datasets_preview_backend/queries/splits.py new file mode 100644 index 00000000..dbe186f1 --- /dev/null +++ b/src/datasets_preview_backend/queries/splits.py @@ -0,0 +1,44 @@ +from typing import List + +from datasets import ( + load_dataset_builder, +) +from datasets.utils.streaming_download_manager import StreamingDownloadManager + +from datasets_preview_backend.exceptions import ( + DatasetBuilderScriptError, + DatasetBuilderNoSplitsError, + ConfigNotFoundError, +) + +# TODO: log the traces on every caught exception + + +def get_splits(dataset: str, config: str) -> List[str]: + try: + builder = load_dataset_builder(dataset, name=config) + except ValueError as err: + message = str(err) + if message.startswith(f"BuilderConfig {config} not found"): + raise ConfigNotFoundError(dataset=dataset, config=config) + elif message.startswith(f"Config name is missing."): + raise ConfigNotFoundError(dataset=dataset, config=config) + else: + raise + except (ModuleNotFoundError, RuntimeError, TypeError): + raise DatasetBuilderScriptError(dataset=dataset) + + if builder.info.splits is None: + # try to get them from _split_generators + try: + splits = [ + split_generator.name + for split_generator in builder._split_generators( + StreamingDownloadManager(base_path=builder.base_path) + ) + ] + except: + raise DatasetBuilderNoSplitsError(dataset=dataset, config=config) + else: + splits = list(builder.info.splits.keys()) + return {"dataset": dataset, "config": config, "splits": splits} diff --git a/src/datasets_preview_backend/routes.py b/src/datasets_preview_backend/routes.py index 91a848c7..0f9f3c59 100644 --- a/src/datasets_preview_backend/routes.py +++ b/src/datasets_preview_backend/routes.py @@ -5 +5,3 @@ from datasets_preview_backend.config import EXTRACT_ROWS_LIMIT -from datasets_preview_backend.queries import extract_rows, get_configs, get_splits +from datasets_preview_backend.queries.configs import get_configs +from datasets_preview_backend.queries.splits import get_splits +from datasets_preview_backend.queries.rows import extract_rows diff --git a/tests/queries/test_configs.py b/tests/queries/test_configs.py new file mode 100644 index 00000000..54f66341 --- /dev/null +++ b/tests/queries/test_configs.py @@ -0,0 +1,24 @@ +from datasets_preview_backend.queries.configs import ( + get_configs, +) + + +def test_get_configs(): + dataset = "acronym_identification" + response = get_configs(dataset) + assert "dataset" in response + assert response["dataset"] == dataset + assert "configs" in response + configs = response["configs"] + assert len(configs) == 1 + assert configs[0] is None + + configs = get_configs("glue")["configs"] + assert len(configs) == 12 + assert "cola" in configs + + +def test_import_nltk(): + # requires the nltk dependency + configs = get_configs("vershasaxena91/squad_multitask")["configs"] + assert len(configs) == 3 diff --git a/tests/test_queries.py b/tests/queries/test_rows.py similarity index 55% rename from tests/test_queries.py rename to tests/queries/test_rows.py index ca698d8a..6f393242 100644 --- a/tests/test_queries.py +++ b/tests/queries/test_rows.py @@ -3 +3 @@ import pytest -from datasets_preview_backend.queries import ( +from datasets_preview_backend.queries.rows import ( @@ -5 +4,0 @@ from datasets_preview_backend.queries import ( - DatasetBuilderNoSplitsError, @@ -10,2 +8,0 @@ from datasets_preview_backend.queries import ( - get_configs, - get_splits, @@ -16,47 +12,0 @@ from datasets_preview_backend.queries import ( -def test_get_configs(): - dataset = "acronym_identification" - response = get_configs(dataset) - assert "dataset" in response - assert response["dataset"] == dataset - assert "configs" in response - configs = response["configs"] - assert len(configs) == 1 - assert configs[0] is None - - configs = get_configs("glue")["configs"] - assert len(configs) == 12 - assert "cola" in configs - - -def test_get_splits(): - dataset = "acronym_identification" - config = None - response = get_splits(dataset, config) - assert "dataset" in response - assert response["dataset"] == dataset - assert "config" in response - assert response["config"] == config - assert "splits" in response - splits = response["splits"] - assert len(splits) == 3 - assert "train" in splits - - splits = get_splits("glue", "ax")["splits"] - assert len(splits) == 1 - assert "test" in splits - assert "train" not in splits - - # uses the fallback to call "builder._split_generators" - splits = get_splits("hda_nli_hindi", "HDA nli hindi")["splits"] - assert len(splits) == 3 - assert "train" in splits - assert "validation" in splits - assert "test" in splits - - splits = get_splits("classla/copa_hr", "copa_hr")["splits"] - assert len(splits) == 3 - - splits = get_splits("mc4", "sn")["splits"] - assert len(splits) == 2 - - @@ -120,6 +69,0 @@ def test_extract_bogus_config(): -def test_extract_bogus_splits(): - # not sure if we have an example of such an error - with pytest.raises(DatasetBuilderNoSplitsError): - get_splits("journalists_questions", "plain_text") - - @@ -134,6 +77,0 @@ def test_tar_gz_extension(): - - -def test_import_nltk(): - # requires the nltk dependency - configs = get_configs("vershasaxena91/squad_multitask")["configs"] - assert len(configs) == 3 diff --git a/tests/queries/test_splits.py b/tests/queries/test_splits.py new file mode 100644 index 00000000..bb1ff982 --- /dev/null +++ b/tests/queries/test_splits.py @@ -0,0 +1,44 @@ +import pytest + +from datasets_preview_backend.queries.splits import ( + DatasetBuilderNoSplitsError, + get_splits, +) + + +def test_get_splits(): + dataset = "acronym_identification" + config = None + response = get_splits(dataset, config) + assert "dataset" in response + assert response["dataset"] == dataset + assert "config" in response + assert response["config"] == config + assert "splits" in response + splits = response["splits"] + assert len(splits) == 3 + assert "train" in splits + + splits = get_splits("glue", "ax")["splits"] + assert len(splits) == 1 + assert "test" in splits + assert "train" not in splits + + # uses the fallback to call "builder._split_generators" + splits = get_splits("hda_nli_hindi", "HDA nli hindi")["splits"] + assert len(splits) == 3 + assert "train" in splits + assert "validation" in splits + assert "test" in splits + + splits = get_splits("classla/copa_hr", "copa_hr")["splits"] + assert len(splits) == 3 + + splits = get_splits("mc4", "sn")["splits"] + assert len(splits) == 2 + + +def test_extract_bogus_splits(): + # not sure if we have an example of such an error + with pytest.raises(DatasetBuilderNoSplitsError): + get_splits("journalists_questions", "plain_text")
4537a0f1aad9e2110c9e39d360b534cbcfee9581
Sylvain Lesage
2021-08-02T08:47:27
feat: 🎸 add nltk dependency
diff --git a/poetry.lock b/poetry.lock index df2f3a97..b35f7d90 100644 --- a/poetry.lock +++ b/poetry.lock @@ -312 +312 @@ name = "datasets" -version = "1.10.2" +version = "1.11.0" @@ -335 +335 @@ benchmarks = ["numpy (==1.18.5)", "tensorflow (==2.3.0)", "torch (==1.6.0)", "tr -dev = ["absl-py", "pytest", "pytest-xdist", "aiohttp", "apache-beam (>=2.26.0)", "elasticsearch", "aiobotocore (==1.2.2)", "boto3 (==1.16.43)", "botocore (==1.19.52)", "faiss-cpu", "fsspec", "moto[server,s3] (==2.0.4)", "rarfile (>=4.0)", "s3fs", "tensorflow (>=2.3)", "torch", "transformers", "bs4", "conllu", "langdetect", "lxml", "mwparserfromhell", "nltk", "openpyxl", "py7zr", "tldextract", "zstandard", "bert-score (>=0.3.6)", "rouge-score", "sacrebleu", "scipy", "seqeval", "scikit-learn", "jiwer", "sentencepiece", "toml (>=0.10.1)", "requests-file (>=1.5.1)", "tldextract (>=3.1.0)", "texttable (>=1.6.3)", "Werkzeug (>=1.0.1)", "six (>=1.15.0,<1.16.0)", "wget (>=3.2)", "pytorch-nlp (==0.5.0)", "pytorch-lightning", "fastBPE (==0.1.0)", "fairseq", "black (==21.4b0)", "flake8 (==3.7.9)", "isort", "pyyaml (>=5.3.1)", "importlib-resources"] +dev = ["absl-py", "pytest", "pytest-xdist", "aiohttp", "apache-beam (>=2.26.0)", "elasticsearch", "aiobotocore (==1.2.2)", "boto3 (==1.16.43)", "botocore (==1.19.52)", "fsspec", "moto[s3,server] (==2.0.4)", "rarfile (>=4.0)", "s3fs", "tensorflow (>=2.3)", "torch", "transformers", "bs4", "conllu", "langdetect", "lxml", "mwparserfromhell", "nltk", "openpyxl", "py7zr", "tldextract", "zstandard", "bert-score (>=0.3.6)", "rouge-score", "sacrebleu", "scipy", "seqeval", "scikit-learn", "jiwer", "sentencepiece", "toml (>=0.10.1)", "requests-file (>=1.5.1)", "tldextract (>=3.1.0)", "texttable (>=1.6.3)", "Werkzeug (>=1.0.1)", "six (>=1.15.0,<1.16.0)", "black (==21.4b0)", "flake8 (==3.7.9)", "isort", "pyyaml (>=5.3.1)", "importlib-resources"] @@ -342 +342 @@ tensorflow_gpu = ["tensorflow-gpu (>=2.2.0)"] -tests = ["absl-py", "pytest", "pytest-xdist", "aiohttp", "apache-beam (>=2.26.0)", "elasticsearch", "aiobotocore (==1.2.2)", "boto3 (==1.16.43)", "botocore (==1.19.52)", "faiss-cpu", "fsspec", "moto[server,s3] (==2.0.4)", "rarfile (>=4.0)", "s3fs", "tensorflow (>=2.3)", "torch", "transformers", "bs4", "conllu", "langdetect", "lxml", "mwparserfromhell", "nltk", "openpyxl", "py7zr", "tldextract", "zstandard", "bert-score (>=0.3.6)", "rouge-score", "sacrebleu", "scipy", "seqeval", "scikit-learn", "jiwer", "sentencepiece", "toml (>=0.10.1)", "requests-file (>=1.5.1)", "tldextract (>=3.1.0)", "texttable (>=1.6.3)", "Werkzeug (>=1.0.1)", "six (>=1.15.0,<1.16.0)", "wget (>=3.2)", "pytorch-nlp (==0.5.0)", "pytorch-lightning", "fastBPE (==0.1.0)", "fairseq", "importlib-resources"] +tests = ["absl-py", "pytest", "pytest-xdist", "aiohttp", "apache-beam (>=2.26.0)", "elasticsearch", "aiobotocore (==1.2.2)", "boto3 (==1.16.43)", "botocore (==1.19.52)", "fsspec", "moto[s3,server] (==2.0.4)", "rarfile (>=4.0)", "s3fs", "tensorflow (>=2.3)", "torch", "transformers", "bs4", "conllu", "langdetect", "lxml", "mwparserfromhell", "nltk", "openpyxl", "py7zr", "tldextract", "zstandard", "bert-score (>=0.3.6)", "rouge-score", "sacrebleu", "scipy", "seqeval", "scikit-learn", "jiwer", "sentencepiece", "toml (>=0.10.1)", "requests-file (>=1.5.1)", "tldextract (>=3.1.0)", "texttable (>=1.6.3)", "Werkzeug (>=1.0.1)", "six (>=1.15.0,<1.16.0)", "importlib-resources"] @@ -617,0 +618 @@ url = "https://github.com/kpu/kenlm/archive/master.zip" + @@ -756,0 +758,22 @@ torch = ["torch"] +[[package]] +name = "nltk" +version = "3.6.2" +description = "Natural Language Toolkit" +category = "main" +optional = false +python-versions = ">=3.5.*" + +[package.dependencies] +click = "*" +joblib = "*" +regex = "*" +tqdm = "*" + +[package.extras] +all = ["matplotlib", "twython", "scipy", "numpy", "gensim (<4.0.0)", "python-crfsuite", "pyparsing", "scikit-learn", "requests"] +corenlp = ["requests"] +machine_learning = ["gensim (<4.0.0)", "numpy", "python-crfsuite", "scikit-learn", "scipy"] +plot = ["matplotlib"] +tgrep = ["pyparsing"] +twitter = ["twython"] + @@ -1491 +1514 @@ python-versions = "^3.8" -content-hash = "a33b4415d9dadbe5601eb950817b4464343d32cde1cbacbad426b2d26cd40fb5" +content-hash = "7fe0a20f2baf129ea8c51856ced71768ff64d01e0c0bea829bdd25cd968c6d80" @@ -1789,2 +1812,2 @@ datasets = [ - {file = "datasets-1.10.2-py3-none-any.whl", hash = "sha256:a523e22b222b38700cc672445f2d534ed4a5aeda1399c074b722feda36b175c2"}, - {file = "datasets-1.10.2.tar.gz", hash = "sha256:19106e8f5fa7be95ccd19fa82653ce707cad378d0e323c3013a17c2b6513bf5c"}, + {file = "datasets-1.11.0-py3-none-any.whl", hash = "sha256:603612b018794e33d8f0655235731bc139b141cb8f864c2f29140940da16955f"}, + {file = "datasets-1.11.0.tar.gz", hash = "sha256:3b01bf12951903e83b528d41129876426eb3a5fbcaf2645552283330528c92bf"}, @@ -2070,0 +2094,4 @@ nlp = [ +nltk = [ + {file = "nltk-3.6.2-py3-none-any.whl", hash = "sha256:240e23ab1ab159ef9940777d30c7c72d7e76d91877099218a7585370c11f6b9e"}, + {file = "nltk-3.6.2.zip", hash = "sha256:57d556abed621ab9be225cc6d2df1edce17572efb67a3d754630c9f8381503eb"}, +] diff --git a/pyproject.toml b/pyproject.toml index 6c86a715..931c143d 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -25,0 +26 @@ kenlm = {url = "https://github.com/kpu/kenlm/archive/master.zip"} +nltk = "^3.6.2" @@ -35,0 +37,5 @@ build-backend = "poetry.core.masonry.api" + +[tool.pytest.ini_options] +filterwarnings = [ + "ignore::DeprecationWarning" +] diff --git a/tests/test_main.py b/tests/test_queries.py similarity index 96% rename from tests/test_main.py rename to tests/test_queries.py index 0b337421..ca698d8a 100644 --- a/tests/test_main.py +++ b/tests/test_queries.py @@ -133,0 +134,6 @@ def test_tar_gz_extension(): + + +def test_import_nltk(): + # requires the nltk dependency + configs = get_configs("vershasaxena91/squad_multitask")["configs"] + assert len(configs) == 3
fe120afd6ab736a64c6e348043d96345585abbcb
Sylvain Lesage
2021-07-30T17:24:25
test: 💍 remove logs during the benchmark
diff --git a/quality/test_datasets.py b/quality/test_datasets.py index 90b05723..efa800f1 100644 --- a/quality/test_datasets.py +++ b/quality/test_datasets.py @@ -4,0 +5,4 @@ from tqdm.contrib.concurrent import process_map +import logging + +# remove any logs +logging.disable(logging.CRITICAL)
ece32583791cbdcff030a45256d1efd8fd4e991e
Sylvain Lesage
2021-07-30T17:16:12
test: 💍 lower chunksize to 5, and factor the variable
diff --git a/quality/test_datasets.py b/quality/test_datasets.py index 679022f5..90b05723 100644 --- a/quality/test_datasets.py +++ b/quality/test_datasets.py @@ -80,0 +81 @@ def export_all_datasets_exceptions(): + chunksize = 5 @@ -84 +85 @@ def export_all_datasets_exceptions(): - configs_reports = process_map(get_configs_report, datasets, chunksize=20) + configs_reports = process_map(get_configs_report, datasets, chunksize=chunksize) @@ -98 +99 @@ def export_all_datasets_exceptions(): - chunksize=20, + chunksize=chunksize, @@ -116 +117 @@ def export_all_datasets_exceptions(): - chunksize=20, + chunksize=chunksize,
977d8e717d6c032f60ea34d6544d238d4cd7e1fa
Sylvain Lesage
2021-07-30T17:14:38
fix: 🐛 fix error names, and fix except place for one
diff --git a/src/datasets_preview_backend/routes.py b/src/datasets_preview_backend/routes.py index 743619b9..91a848c7 100644 --- a/src/datasets_preview_backend/routes.py +++ b/src/datasets_preview_backend/routes.py @@ -9 +9 @@ from datasets_preview_backend.exceptions import ( - DatasetBuilderScriptConfigNoSplitsError, + DatasetBuilderNoSplitsError, @@ -45 +44,0 @@ async def rows(request: Request): - DatasetBuilderScriptConfigNoSplitsError, @@ -84 +83 @@ async def splits(request: Request): - except (DatasetBuilderScriptError,) as err: + except (DatasetBuilderScriptError, DatasetBuilderNoSplitsError) as err:
e303d1ec54b806d48405e37ce27852a25896b875
Sylvain Lesage
2021-07-30T17:10:12
test: 💍 change error name and add a test
diff --git a/src/datasets_preview_backend/exceptions.py b/src/datasets_preview_backend/exceptions.py index f9f8d1cb..2dbf6a7e 100644 --- a/src/datasets_preview_backend/exceptions.py +++ b/src/datasets_preview_backend/exceptions.py @@ -28,2 +28,2 @@ class DatasetBuilderScriptError(Error): -class DatasetBuilderScriptConfigNoSplitsError(Error): - """Exception raised if the builder script fails for this config. +class DatasetBuilderNoSplitsError(Error): + """Exception raised if the builder script fails to provide the list of splits. @@ -40 +40 @@ class DatasetBuilderScriptConfigNoSplitsError(Error): - f"Dataset builder script error: missing .info.splits. Dataset: '{self.dataset}', config: {print_config(self.config)}" + f"Dataset builder script error: could not get the list of splits. Dataset: '{self.dataset}', config: {print_config(self.config)}" diff --git a/src/datasets_preview_backend/queries.py b/src/datasets_preview_backend/queries.py index 20619ce7..10c973f3 100644 --- a/src/datasets_preview_backend/queries.py +++ b/src/datasets_preview_backend/queries.py @@ -17 +17 @@ from datasets_preview_backend.exceptions import ( - DatasetBuilderScriptConfigNoSplitsError, + DatasetBuilderNoSplitsError, @@ -65,3 +65 @@ def get_splits(dataset: str, config: str) -> List[str]: - raise DatasetBuilderScriptConfigNoSplitsError( - dataset=dataset, config=config - ) + raise DatasetBuilderNoSplitsError(dataset=dataset, config=config) diff --git a/tests/test_main.py b/tests/test_main.py index 8a8735d5..0b337421 100644 --- a/tests/test_main.py +++ b/tests/test_main.py @@ -5 +5 @@ from datasets_preview_backend.queries import ( - # DatasetBuilderScriptConfigNoSplitsError, + DatasetBuilderNoSplitsError, @@ -120,4 +120,4 @@ def test_extract_bogus_config(): -# def test_extract_bogus_splits(): -# not sure if we have an example of such an error -# with pytest.raises(DatasetBuilderScriptConfigNoSplitsError): -# extract_config_rows("mc4", "sn", 10) +def test_extract_bogus_splits(): + # not sure if we have an example of such an error + with pytest.raises(DatasetBuilderNoSplitsError): + get_splits("journalists_questions", "plain_text")
3966b6c3ed96010a27ec69a4c0b26a28229a3fae
Sylvain Lesage
2021-07-30T16:53:31
feat: 🎸 improve coherence in keys: dataset, config, split
diff --git a/quality/test_datasets.py b/quality/test_datasets.py index d16afa3d..679022f5 100644 --- a/quality/test_datasets.py +++ b/quality/test_datasets.py @@ -8 +8 @@ from datasets_preview_backend.queries import ( - get_config_names, + get_configs, @@ -14 +14 @@ from datasets_preview_backend.queries import ( -def get_config_names_report(dataset_id: str): +def get_configs_report(dataset: str): @@ -16 +16 @@ def get_config_names_report(dataset_id: str): - config_names = get_config_names(dataset_id)["config_names"] + configs = get_configs(dataset)["configs"] @@ -18,2 +18,2 @@ def get_config_names_report(dataset_id: str): - "dataset_id": dataset_id, - "config_names": list(config_names), + "dataset": dataset, + "configs": list(configs), @@ -26,2 +26,2 @@ def get_config_names_report(dataset_id: str): - "dataset_id": dataset_id, - "config_names": [], + "dataset": dataset, + "configs": [], @@ -34 +34 @@ def get_config_names_report(dataset_id: str): -def get_split_names_report(dataset_id: str, config_name: str): +def get_splits_report(dataset: str, config: str): @@ -36 +36 @@ def get_split_names_report(dataset_id: str, config_name: str): - split_names = get_splits(dataset_id, config_name)["splits"] + splits = get_splits(dataset, config)["splits"] @@ -38,3 +38,3 @@ def get_split_names_report(dataset_id: str, config_name: str): - "dataset_id": dataset_id, - "config_name": config_name, - "split_names": list(split_names), + "dataset": dataset, + "config": config, + "splits": list(splits), @@ -47,3 +47,3 @@ def get_split_names_report(dataset_id: str, config_name: str): - "dataset_id": dataset_id, - "config_name": config_name, - "split_names": [], + "dataset": dataset, + "config": config, + "splits": [], @@ -56 +56 @@ def get_split_names_report(dataset_id: str, config_name: str): -def get_rows_report(dataset_id: str, config_name: str, split_name: str): +def get_rows_report(dataset: str, config: str, split: str): @@ -59,5 +59 @@ def get_rows_report(dataset_id: str, config_name: str, split_name: str): - rows = extract_rows(dataset_id, config_name, split_name, num_rows)["rows"] - if len(rows) != num_rows: - raise ValueError( - f"number of rows is different from required: {len(rows)} instead of {num_rows}" - ) + rows = extract_rows(dataset, config, split, num_rows)["rows"] @@ -65,3 +61,4 @@ def get_rows_report(dataset_id: str, config_name: str, split_name: str): - "dataset_id": dataset_id, - "config_name": config_name, - "split_name": split_name, + "dataset": dataset, + "config": config, + "split": split, + "row_length": len(rows), @@ -74,3 +71,3 @@ def get_rows_report(dataset_id: str, config_name: str, split_name: str): - "dataset_id": dataset_id, - "config_name": config_name, - "split_name": split_name, + "dataset": dataset, + "config": config, + "split": split, @@ -84 +81 @@ def export_all_datasets_exceptions(): - dataset_ids = list_datasets(with_community_datasets=True) + datasets = list_datasets(with_community_datasets=True) @@ -87,16 +84,14 @@ def export_all_datasets_exceptions(): - config_names_reports = process_map( - get_config_names_report, dataset_ids, chunksize=20 - ) - - print("Get split names for all the pairs (dataset_id, config_name)") - split_names_dataset_ids = [] - split_names_config_names = [] - for report in config_names_reports: - for config_name in report["config_names"]: - # reports with an exception will not contribute to the lists since config_names is empty - split_names_dataset_ids.append(report["dataset_id"]) - split_names_config_names.append(config_name) - split_names_reports = process_map( - get_split_names_report, - split_names_dataset_ids, - split_names_config_names, + configs_reports = process_map(get_configs_report, datasets, chunksize=20) + + print("Get split names for all the pairs (dataset, config)") + splits_datasets = [] + splits_configs = [] + for report in configs_reports: + for config in report["configs"]: + # reports with an exception will not contribute to the lists since configs is empty + splits_datasets.append(report["dataset"]) + splits_configs.append(config) + splits_reports = process_map( + get_splits_report, + splits_datasets, + splits_configs, @@ -106,10 +101,10 @@ def export_all_datasets_exceptions(): - print("Get rows extract for all the tuples (dataset_id, config_name, split_name)") - rows_dataset_ids = [] - rows_config_names = [] - rows_split_names = [] - for report in split_names_reports: - for split_name in report["split_names"]: - # reports with an exception will not contribute to the lists since split_names is empty - rows_dataset_ids.append(report["dataset_id"]) - rows_config_names.append(report["config_name"]) - rows_split_names.append(split_name) + print("Get rows extract for all the tuples (dataset, config, split)") + rows_datasets = [] + rows_configs = [] + rows_splits = [] + for report in splits_reports: + for split in report["splits"]: + # reports with an exception will not contribute to the lists since splits is empty + rows_datasets.append(report["dataset"]) + rows_configs.append(report["config"]) + rows_splits.append(split) @@ -118,3 +113,3 @@ def export_all_datasets_exceptions(): - rows_dataset_ids, - rows_config_names, - rows_split_names, + rows_datasets, + rows_configs, + rows_splits, @@ -125,2 +120,2 @@ def export_all_datasets_exceptions(): - "config_names_reports": config_names_reports, - "split_names_reports": split_names_reports, + "configs_reports": configs_reports, + "splits_reports": splits_reports, diff --git a/src/datasets_preview_backend/exceptions.py b/src/datasets_preview_backend/exceptions.py index 16f853c8..f9f8d1cb 100644 --- a/src/datasets_preview_backend/exceptions.py +++ b/src/datasets_preview_backend/exceptions.py @@ -1,2 +1,2 @@ -def print_config(config_name): - if config_name is None: +def print_config(config): + if config is None: @@ -5 +5 @@ def print_config(config_name): - return f"'{config_name}'" + return f"'{config}'" @@ -20 +20 @@ class DatasetBuilderScriptError(Error): - dataset_id -- the erroneous dataset id + dataset -- the erroneous dataset id @@ -23,3 +23,3 @@ class DatasetBuilderScriptError(Error): - def __init__(self, dataset_id): - self.dataset_id = dataset_id - super().__init__(f"Dataset builder script error. Dataset: '{self.dataset_id}'") + def __init__(self, dataset): + self.dataset = dataset + super().__init__(f"Dataset builder script error. Dataset: '{self.dataset}'") @@ -32,2 +32,2 @@ class DatasetBuilderScriptConfigNoSplitsError(Error): - dataset_id -- the erroneous dataset id - config_name -- the erroneous dataset config_name + dataset -- the erroneous dataset id + config -- the erroneous dataset config name @@ -36,3 +36,3 @@ class DatasetBuilderScriptConfigNoSplitsError(Error): - def __init__(self, dataset_id, config_name): - self.dataset_id = dataset_id - self.config_name = config_name + def __init__(self, dataset, config): + self.dataset = dataset + self.config = config @@ -40 +40 @@ class DatasetBuilderScriptConfigNoSplitsError(Error): - f"Dataset builder script error: missing .info.splits. Dataset: '{self.dataset_id}', config: {print_config(self.config_name)}" + f"Dataset builder script error: missing .info.splits. Dataset: '{self.dataset}', config: {print_config(self.config)}" @@ -48 +48 @@ class DatasetNotFoundError(Error): - dataset_id -- the erroneous dataset id + dataset -- the erroneous dataset id @@ -51,3 +51,3 @@ class DatasetNotFoundError(Error): - def __init__(self, dataset_id): - self.dataset_id = dataset_id - super().__init__(f"Dataset not found. Dataset: '{self.dataset_id}'") + def __init__(self, dataset): + self.dataset = dataset + super().__init__(f"Dataset not found. Dataset: '{self.dataset}'") @@ -60,2 +60,2 @@ class ConfigNotFoundError(Error): - dataset_id -- the erroneous dataset id - config_name -- the erroneous dataset config_name + dataset -- the erroneous dataset id + config -- the erroneous dataset config name @@ -64,3 +64,3 @@ class ConfigNotFoundError(Error): - def __init__(self, dataset_id, config_name): - self.dataset_id = dataset_id - self.config_name = config_name + def __init__(self, dataset, config): + self.dataset = dataset + self.config = config @@ -68 +68 @@ class ConfigNotFoundError(Error): - f"Config not found. Dataset: '{self.dataset_id}', config: {print_config(self.config_name)}" + f"Config not found. Dataset: '{self.dataset}', config: {print_config(self.config)}" @@ -76,3 +76,3 @@ class SplitError(Error): - dataset_id -- the erroneous dataset id - config_name -- the erroneous dataset config_name - split -- the erroneous dataset split + dataset -- the erroneous dataset id + config -- the erroneous dataset config name + split -- the erroneous dataset split name @@ -81,3 +81,3 @@ class SplitError(Error): - def __init__(self, dataset_id, config_name, split): - self.dataset_id = dataset_id - self.config_name = config_name + def __init__(self, dataset, config, split): + self.dataset = dataset + self.config = config @@ -86 +86 @@ class SplitError(Error): - f"Split error. Dataset: '{self.dataset_id}', config: {print_config(self.config_name)}, split: '{self.split}'" + f"Split error. Dataset: '{self.dataset}', config: {print_config(self.config)}, split: '{self.split}'" @@ -94,3 +94,3 @@ class SplitNotImplementedError(Error): - dataset_id -- the erroneous dataset id - config_name -- the erroneous dataset config_name - split -- the erroneous dataset split + dataset -- the erroneous dataset id + config -- the erroneous dataset config name + split -- the erroneous dataset split name @@ -100,3 +100,3 @@ class SplitNotImplementedError(Error): - def __init__(self, dataset_id, config_name, split, extension): - self.dataset_id = dataset_id - self.config_name = config_name + def __init__(self, dataset, config, split, extension): + self.dataset = dataset + self.config = config @@ -109 +109 @@ class SplitNotImplementedError(Error): - f"Extraction protocol not implemented{extension_str}. Dataset: '{self.dataset_id}', config: {print_config(self.config_name)}, split: '{self.split}'" + f"Extraction protocol not implemented{extension_str}. Dataset: '{self.dataset}', config: {print_config(self.config)}, split: '{self.split}'" diff --git a/src/datasets_preview_backend/queries.py b/src/datasets_preview_backend/queries.py index 38df9e46..20619ce7 100644 --- a/src/datasets_preview_backend/queries.py +++ b/src/datasets_preview_backend/queries.py @@ -27 +27 @@ from datasets_preview_backend.exceptions import ( -def get_config_names(dataset_id: str) -> List[str]: +def get_configs(dataset: str) -> List[str]: @@ -29 +29 @@ def get_config_names(dataset_id: str) -> List[str]: - module_path, *_ = prepare_module(dataset_id, dataset=True) + module_path, *_ = prepare_module(dataset, dataset=True) @@ -32 +32 @@ def get_config_names(dataset_id: str) -> List[str]: - raise DatasetNotFoundError(dataset_id=dataset_id) + raise DatasetNotFoundError(dataset=dataset) @@ -34 +34 @@ def get_config_names(dataset_id: str) -> List[str]: - raise DatasetBuilderScriptError(dataset_id=dataset_id) + raise DatasetBuilderScriptError(dataset=dataset) @@ -36,5 +36,3 @@ def get_config_names(dataset_id: str) -> List[str]: - config_names = [c.name for c in builder_cls.BUILDER_CONFIGS] or [None] - logging.debug( - f"The dataset builder has {len(config_names)} configs: {config_names}" - ) - return {"dataset_id": dataset_id, "config_names": config_names} + configs = [c.name for c in builder_cls.BUILDER_CONFIGS] or [None] + logging.debug(f"The dataset builder has {len(configs)} configs: {configs}") + return {"dataset": dataset, "configs": configs} @@ -43 +41 @@ def get_config_names(dataset_id: str) -> List[str]: -def get_splits(dataset_id: str, config_name: str) -> List[str]: +def get_splits(dataset: str, config: str) -> List[str]: @@ -45 +43 @@ def get_splits(dataset_id: str, config_name: str) -> List[str]: - builder = load_dataset_builder(dataset_id, name=config_name) + builder = load_dataset_builder(dataset, name=config) @@ -48,2 +46,2 @@ def get_splits(dataset_id: str, config_name: str) -> List[str]: - if message.startswith(f"BuilderConfig {config_name} not found"): - raise ConfigNotFoundError(dataset_id=dataset_id, config_name=config_name) + if message.startswith(f"BuilderConfig {config} not found"): + raise ConfigNotFoundError(dataset=dataset, config=config) @@ -51 +49 @@ def get_splits(dataset_id: str, config_name: str) -> List[str]: - raise ConfigNotFoundError(dataset_id=dataset_id, config_name=config_name) + raise ConfigNotFoundError(dataset=dataset, config=config) @@ -55 +53 @@ def get_splits(dataset_id: str, config_name: str) -> List[str]: - raise DatasetBuilderScriptError(dataset_id=dataset_id) + raise DatasetBuilderScriptError(dataset=dataset) @@ -68 +66 @@ def get_splits(dataset_id: str, config_name: str) -> List[str]: - dataset_id=dataset_id, config_name=config_name + dataset=dataset, config=config @@ -72 +70 @@ def get_splits(dataset_id: str, config_name: str) -> List[str]: - return {"dataset_id": dataset_id, "config_name": config_name, "splits": splits} + return {"dataset": dataset, "config": config, "splits": splits} @@ -75 +73 @@ def get_splits(dataset_id: str, config_name: str) -> List[str]: -def extract_rows(dataset_id: str, config_name: str, split: str, num_rows: int): +def extract_rows(dataset: str, config: str, split: str, num_rows: int): @@ -77 +75 @@ def extract_rows(dataset_id: str, config_name: str, split: str, num_rows: int): - f"asked for {num_rows} first rows of dataset {dataset_id} - {config_name} - {split}" + f"asked for {num_rows} first rows of dataset {dataset} - {config} - {split}" @@ -81,2 +79,2 @@ def extract_rows(dataset_id: str, config_name: str, split: str, num_rows: int): - dataset: IterableDataset = load_dataset( - dataset_id, name=config_name, split=split, streaming=True + iterable_dataset: IterableDataset = load_dataset( + dataset, name=config, split=split, streaming=True @@ -85 +83 @@ def extract_rows(dataset_id: str, config_name: str, split: str, num_rows: int): - raise DatasetNotFoundError(dataset_id=dataset_id) + raise DatasetNotFoundError(dataset=dataset) @@ -96,2 +94,2 @@ def extract_rows(dataset_id: str, config_name: str, split: str, num_rows: int): - dataset_id=dataset_id, - config_name=config_name, + dataset=dataset, + config=config, @@ -103,2 +101,2 @@ def extract_rows(dataset_id: str, config_name: str, split: str, num_rows: int): - if message.startswith(f"BuilderConfig {config_name} not found"): - raise ConfigNotFoundError(dataset_id=dataset_id, config_name=config_name) + if message.startswith(f"BuilderConfig {config} not found"): + raise ConfigNotFoundError(dataset=dataset, config=config) @@ -106 +104 @@ def extract_rows(dataset_id: str, config_name: str, split: str, num_rows: int): - raise ConfigNotFoundError(dataset_id=dataset_id, config_name=config_name) + raise ConfigNotFoundError(dataset=dataset, config=config) @@ -110,3 +108 @@ def extract_rows(dataset_id: str, config_name: str, split: str, num_rows: int): - raise SplitError( - dataset_id=dataset_id, config_name=config_name, split=split - ) + raise SplitError(dataset=dataset, config=config, split=split) @@ -116 +112 @@ def extract_rows(dataset_id: str, config_name: str, split: str, num_rows: int): - raise DatasetBuilderScriptError(dataset_id=dataset_id) + raise DatasetBuilderScriptError(dataset=dataset) @@ -118 +114 @@ def extract_rows(dataset_id: str, config_name: str, split: str, num_rows: int): - rows = list(dataset.take(num_rows)) + rows = list(iterable_dataset.take(num_rows)) @@ -121 +117 @@ def extract_rows(dataset_id: str, config_name: str, split: str, num_rows: int): - f"could not read all the required rows ({len(rows)} / {num_rows}) from dataset {dataset_id} - {config_name} - {split}" + f"could not read all the required rows ({len(rows)} / {num_rows}) from dataset {dataset} - {config} - {split}" @@ -125,2 +121,2 @@ def extract_rows(dataset_id: str, config_name: str, split: str, num_rows: int): - "dataset_id": dataset_id, - "config_name": config_name, + "dataset": dataset, + "config": config, diff --git a/src/datasets_preview_backend/routes.py b/src/datasets_preview_backend/routes.py index 7494df6d..743619b9 100644 --- a/src/datasets_preview_backend/routes.py +++ b/src/datasets_preview_backend/routes.py @@ -5 +5 @@ from datasets_preview_backend.config import EXTRACT_ROWS_LIMIT -from datasets_preview_backend.queries import extract_rows, get_config_names, get_splits +from datasets_preview_backend.queries import extract_rows, get_configs, get_splits @@ -22,3 +22,3 @@ async def rows(request: Request): - dataset_id: str = request.query_params.get("dataset") - config_name: str = request.query_params.get("config") - split_name: str = request.query_params.get("split") + dataset: str = request.query_params.get("dataset") + config: str = request.query_params.get("config") + split: str = request.query_params.get("split") @@ -29 +29 @@ async def rows(request: Request): - if dataset_id is None: + if dataset is None: @@ -34 +34 @@ async def rows(request: Request): - if split_name is None: + if split is None: @@ -40 +40 @@ async def rows(request: Request): - return JSONResponse(extract_rows(dataset_id, config_name, split_name, num_rows)) + return JSONResponse(extract_rows(dataset, config, split, num_rows)) @@ -54 +54 @@ async def configs(request: Request): - dataset_id: str = request.query_params.get("dataset") + dataset: str = request.query_params.get("dataset") @@ -56 +56 @@ async def configs(request: Request): - if dataset_id is None: + if dataset is None: @@ -62 +62 @@ async def configs(request: Request): - return JSONResponse(get_config_names(dataset_id)) + return JSONResponse(get_configs(dataset)) @@ -71,2 +71,2 @@ async def splits(request: Request): - dataset_id: str = request.query_params.get("dataset") - config_name: str = request.query_params.get("config") + dataset: str = request.query_params.get("dataset") + config: str = request.query_params.get("config") @@ -74 +74 @@ async def splits(request: Request): - if dataset_id is None: + if dataset is None: @@ -81 +81 @@ async def splits(request: Request): - return JSONResponse(get_splits(dataset_id, config_name)) + return JSONResponse(get_splits(dataset, config)) diff --git a/tests/test_main.py b/tests/test_main.py index 1819b912..8a8735d5 100644 --- a/tests/test_main.py +++ b/tests/test_main.py @@ -10 +10 @@ from datasets_preview_backend.queries import ( - get_config_names, + get_configs, @@ -17,8 +17,8 @@ def test_get_configs(): - dataset_id = "acronym_identification" - response = get_config_names(dataset_id) - assert "dataset_id" in response - assert response["dataset_id"] == dataset_id - assert "config_names" in response - config_names = response["config_names"] - assert len(config_names) == 1 - assert config_names[0] is None + dataset = "acronym_identification" + response = get_configs(dataset) + assert "dataset" in response + assert response["dataset"] == dataset + assert "configs" in response + configs = response["configs"] + assert len(configs) == 1 + assert configs[0] is None @@ -26,3 +26,3 @@ def test_get_configs(): - config_names = get_config_names("glue")["config_names"] - assert len(config_names) == 12 - assert "cola" in config_names + configs = get_configs("glue")["configs"] + assert len(configs) == 12 + assert "cola" in configs @@ -32,7 +32,7 @@ def test_get_splits(): - dataset_id = "acronym_identification" - config_name = None - response = get_splits(dataset_id, config_name) - assert "dataset_id" in response - assert response["dataset_id"] == dataset_id - assert "config_name" in response - assert response["config_name"] == config_name + dataset = "acronym_identification" + config = None + response = get_splits(dataset, config) + assert "dataset" in response + assert response["dataset"] == dataset + assert "config" in response + assert response["config"] == config @@ -64,2 +64,2 @@ def test_extract_split_rows(): - dataset_id = "acronym_identification" - config_name = None + dataset = "acronym_identification" + config = None @@ -68,3 +68,3 @@ def test_extract_split_rows(): - extract = extract_rows(dataset_id, config_name, split, num_rows) - assert "dataset_id" in extract and extract["dataset_id"] == dataset_id - assert "config_name" in extract and extract["config_name"] == config_name + extract = extract_rows(dataset, config, split, num_rows) + assert "dataset" in extract and extract["dataset"] == dataset + assert "config" in extract and extract["config"] == config @@ -79,2 +79,2 @@ def test_extract_split_rows_num_rows(): - dataset_id = "acronym_identification" - config_name = None + dataset = "acronym_identification" + config = None @@ -83 +83 @@ def test_extract_split_rows_num_rows(): - extract = extract_rows(dataset_id, config_name, split, num_rows) + extract = extract_rows(dataset, config, split, num_rows)
f50c3dc1de1b6636d86544886ab81e2968591460
Sylvain Lesage
2021-07-30T16:37:14
feat: 🎸 change response format for /splits and /configs
diff --git a/quality/test_datasets.py b/quality/test_datasets.py index cf94362f..d16afa3d 100644 --- a/quality/test_datasets.py +++ b/quality/test_datasets.py @@ -16 +16 @@ def get_config_names_report(dataset_id: str): - config_names = get_config_names(dataset_id) + config_names = get_config_names(dataset_id)["config_names"] @@ -36 +36 @@ def get_split_names_report(dataset_id: str, config_name: str): - split_names = get_splits(dataset_id, config_name) + split_names = get_splits(dataset_id, config_name)["splits"] @@ -59,3 +59,5 @@ def get_rows_report(dataset_id: str, config_name: str, split_name: str): - extract = extract_rows(dataset_id, config_name, split_name, num_rows) - if len(extract["rows"]) != num_rows: - raise ValueError(f"{len(extract['rows'])} rows instead of {num_rows}") + rows = extract_rows(dataset_id, config_name, split_name, num_rows)["rows"] + if len(rows) != num_rows: + raise ValueError( + f"number of rows is different from required: {len(rows)} instead of {num_rows}" + ) diff --git a/src/datasets_preview_backend/queries.py b/src/datasets_preview_backend/queries.py index b3cc6c1d..38df9e46 100644 --- a/src/datasets_preview_backend/queries.py +++ b/src/datasets_preview_backend/queries.py @@ -40 +40 @@ def get_config_names(dataset_id: str) -> List[str]: - return config_names + return {"dataset_id": dataset_id, "config_names": config_names} @@ -72 +72 @@ def get_splits(dataset_id: str, config_name: str) -> List[str]: - return splits + return {"dataset_id": dataset_id, "config_name": config_name, "splits": splits} diff --git a/tests/test_main.py b/tests/test_main.py index e0f32501..1819b912 100644 --- a/tests/test_main.py +++ b/tests/test_main.py @@ -17 +17,6 @@ def test_get_configs(): - config_names = get_config_names("acronym_identification") + dataset_id = "acronym_identification" + response = get_config_names(dataset_id) + assert "dataset_id" in response + assert response["dataset_id"] == dataset_id + assert "config_names" in response + config_names = response["config_names"] @@ -21 +26 @@ def test_get_configs(): - config_names = get_config_names("glue") + config_names = get_config_names("glue")["config_names"] @@ -26,2 +31,10 @@ def test_get_configs(): -def test_get_splits(): # sourcery skip: extract-duplicate-method - splits = get_splits("acronym_identification", None) +def test_get_splits(): + dataset_id = "acronym_identification" + config_name = None + response = get_splits(dataset_id, config_name) + assert "dataset_id" in response + assert response["dataset_id"] == dataset_id + assert "config_name" in response + assert response["config_name"] == config_name + assert "splits" in response + splits = response["splits"] @@ -31 +44 @@ def test_get_splits(): # sourcery skip: extract-duplicate-method - splits = get_splits("glue", "ax") + splits = get_splits("glue", "ax")["splits"] @@ -37 +50 @@ def test_get_splits(): # sourcery skip: extract-duplicate-method - splits = get_splits("hda_nli_hindi", "HDA nli hindi") + splits = get_splits("hda_nli_hindi", "HDA nli hindi")["splits"] @@ -43 +56 @@ def test_get_splits(): # sourcery skip: extract-duplicate-method - splits = get_splits("classla/copa_hr", "copa_hr") + splits = get_splits("classla/copa_hr", "copa_hr")["splits"] @@ -46 +59 @@ def test_get_splits(): # sourcery skip: extract-duplicate-method - splits = get_splits("mc4", "sn") + splits = get_splits("mc4", "sn")["splits"]
54cf304b6e3ebfbc8cdc6554a0d5512947bfb6b3
Sylvain Lesage
2021-07-30T16:21:44
feat: 🎸 add /splits route
diff --git a/src/datasets_preview_backend/exceptions.py b/src/datasets_preview_backend/exceptions.py index d43154e4..16f853c8 100644 --- a/src/datasets_preview_backend/exceptions.py +++ b/src/datasets_preview_backend/exceptions.py @@ -0,0 +1,7 @@ +def print_config(config_name): + if config_name is None: + return "None" + else: + return f"'{config_name}'" + + @@ -33 +40 @@ class DatasetBuilderScriptConfigNoSplitsError(Error): - f"Dataset builder script error: missing .info.splits. Dataset: '{self.dataset_id}', config: '{self.config_name}'" + f"Dataset builder script error: missing .info.splits. Dataset: '{self.dataset_id}', config: {print_config(self.config_name)}" @@ -61 +68 @@ class ConfigNotFoundError(Error): - f"Config not found. Dataset: '{self.dataset_id}', config: '{self.config_name}'" + f"Config not found. Dataset: '{self.dataset_id}', config: {print_config(self.config_name)}" @@ -79 +86 @@ class SplitError(Error): - f"Split error. Dataset: '{self.dataset_id}', config: '{self.config_name}', script: '{self.split}'" + f"Split error. Dataset: '{self.dataset_id}', config: {print_config(self.config_name)}, split: '{self.split}'" @@ -102 +109 @@ class SplitNotImplementedError(Error): - f"Extraction protocol not implemented{extension_str}. Dataset: '{self.dataset_id}', config: '{self.config_name}', script: '{self.split}'" + f"Extraction protocol not implemented{extension_str}. Dataset: '{self.dataset_id}', config: {print_config(self.config_name)}, split: '{self.split}'" diff --git a/src/datasets_preview_backend/main.py b/src/datasets_preview_backend/main.py index 371b6f3d..fc9ea1af 100644 --- a/src/datasets_preview_backend/main.py +++ b/src/datasets_preview_backend/main.py @@ -6 +6 @@ from datasets_preview_backend.config import PORT -from datasets_preview_backend.routes import healthcheck, rows, configs +from datasets_preview_backend.routes import healthcheck, rows, configs, splits @@ -14,0 +15 @@ def start(): + Route("/splits", endpoint=splits), diff --git a/src/datasets_preview_backend/queries.py b/src/datasets_preview_backend/queries.py index 98a12dac..b3cc6c1d 100644 --- a/src/datasets_preview_backend/queries.py +++ b/src/datasets_preview_backend/queries.py @@ -49,0 +50,2 @@ def get_splits(dataset_id: str, config_name: str) -> List[str]: + elif message.startswith(f"Config name is missing."): + raise ConfigNotFoundError(dataset_id=dataset_id, config_name=config_name) diff --git a/src/datasets_preview_backend/routes.py b/src/datasets_preview_backend/routes.py index c35c6533..7494df6d 100644 --- a/src/datasets_preview_backend/routes.py +++ b/src/datasets_preview_backend/routes.py @@ -5 +5 @@ from datasets_preview_backend.config import EXTRACT_ROWS_LIMIT -from datasets_preview_backend.queries import extract_rows, get_config_names +from datasets_preview_backend.queries import extract_rows, get_config_names, get_splits @@ -67,0 +68,19 @@ async def configs(request: Request): + + +async def splits(request: Request): + dataset_id: str = request.query_params.get("dataset") + config_name: str = request.query_params.get("config") + + if dataset_id is None: + return PlainTextResponse( + "'dataset' is a required query parameter.", status_code=400 + ) + # note: config_name must not be set to refer to the None config_name (the majority of datasets). + + try: + return JSONResponse(get_splits(dataset_id, config_name)) + except (ConfigNotFoundError) as err: + return PlainTextResponse(err.message, status_code=404) + except (DatasetBuilderScriptError,) as err: + return PlainTextResponse(err.message, status_code=400) + # other exceptions will generate a 500 response
10c919338df4db6d9057b08b5c3b63baa4aaccab
Sylvain Lesage
2021-07-30T16:13:40
feat: 🎸 add /configs route
diff --git a/src/datasets_preview_backend/main.py b/src/datasets_preview_backend/main.py index c636acc4..371b6f3d 100644 --- a/src/datasets_preview_backend/main.py +++ b/src/datasets_preview_backend/main.py @@ -6 +6 @@ from datasets_preview_backend.config import PORT -from datasets_preview_backend.routes import healthcheck, rows +from datasets_preview_backend.routes import healthcheck, rows, configs @@ -13,0 +14 @@ def start(): + Route("/configs", endpoint=configs), diff --git a/src/datasets_preview_backend/routes.py b/src/datasets_preview_backend/routes.py index a80f2b1c..c35c6533 100644 --- a/src/datasets_preview_backend/routes.py +++ b/src/datasets_preview_backend/routes.py @@ -50,0 +51,17 @@ async def rows(request: Request): + + +async def configs(request: Request): + dataset_id: str = request.query_params.get("dataset") + + if dataset_id is None: + return PlainTextResponse( + "'dataset' is a required query parameter.", status_code=400 + ) + + try: + return JSONResponse(get_config_names(dataset_id)) + except (DatasetNotFoundError) as err: + return PlainTextResponse(err.message, status_code=404) + except (DatasetBuilderScriptError,) as err: + return PlainTextResponse(err.message, status_code=400) + # other exceptions will generate a 500 response
ee257684864cfd227b130236235e130aed08a014
Sylvain Lesage
2021-07-30T16:07:11
fix: 🐛 fix name
diff --git a/quality/test_datasets.py b/quality/test_datasets.py index 519c9e25..cf94362f 100644 --- a/quality/test_datasets.py +++ b/quality/test_datasets.py @@ -8,3 +8,3 @@ from datasets_preview_backend.queries import ( - get_dataset_config_names, - get_config_splits, - extract_split_rows, + get_config_names, + get_splits, + extract_rows, @@ -16 +16 @@ def get_config_names_report(dataset_id: str): - config_names = get_dataset_config_names(dataset_id) + config_names = get_config_names(dataset_id) @@ -36 +36 @@ def get_split_names_report(dataset_id: str, config_name: str): - split_names = get_config_splits(dataset_id, config_name) + split_names = get_splits(dataset_id, config_name) @@ -59 +59 @@ def get_rows_report(dataset_id: str, config_name: str, split_name: str): - extract = extract_split_rows(dataset_id, config_name, split_name, num_rows) + extract = extract_rows(dataset_id, config_name, split_name, num_rows) diff --git a/src/datasets_preview_backend/queries.py b/src/datasets_preview_backend/queries.py index e2e648b1..98a12dac 100644 --- a/src/datasets_preview_backend/queries.py +++ b/src/datasets_preview_backend/queries.py @@ -27 +27 @@ from datasets_preview_backend.exceptions import ( -def get_dataset_config_names(dataset_id: str) -> List[str]: +def get_config_names(dataset_id: str) -> List[str]: @@ -43 +43 @@ def get_dataset_config_names(dataset_id: str) -> List[str]: -def get_config_splits(dataset_id: str, config_name: str) -> List[str]: +def get_splits(dataset_id: str, config_name: str) -> List[str]: diff --git a/src/datasets_preview_backend/routes.py b/src/datasets_preview_backend/routes.py index 9712b3c7..a80f2b1c 100644 --- a/src/datasets_preview_backend/routes.py +++ b/src/datasets_preview_backend/routes.py @@ -5 +5 @@ from datasets_preview_backend.config import EXTRACT_ROWS_LIMIT -from datasets_preview_backend.queries import extract_split_rows +from datasets_preview_backend.queries import extract_rows, get_config_names @@ -40,3 +40 @@ async def rows(request: Request): - return JSONResponse( - extract_split_rows(dataset_id, config_name, split_name, num_rows) - ) + return JSONResponse(extract_rows(dataset_id, config_name, split_name, num_rows)) diff --git a/tests/test_main.py b/tests/test_main.py index 46ff0365..e0f32501 100644 --- a/tests/test_main.py +++ b/tests/test_main.py @@ -10,2 +10,2 @@ from datasets_preview_backend.queries import ( - get_dataset_config_names, - get_config_splits, + get_config_names, + get_splits, @@ -17 +17 @@ def test_get_configs(): - config_names = get_dataset_config_names("acronym_identification") + config_names = get_config_names("acronym_identification") @@ -21 +21 @@ def test_get_configs(): - config_names = get_dataset_config_names("glue") + config_names = get_config_names("glue") @@ -27 +27 @@ def test_get_splits(): # sourcery skip: extract-duplicate-method - splits = get_config_splits("acronym_identification", None) + splits = get_splits("acronym_identification", None) @@ -31 +31 @@ def test_get_splits(): # sourcery skip: extract-duplicate-method - splits = get_config_splits("glue", "ax") + splits = get_splits("glue", "ax") @@ -37 +37 @@ def test_get_splits(): # sourcery skip: extract-duplicate-method - splits = get_config_splits("hda_nli_hindi", "HDA nli hindi") + splits = get_splits("hda_nli_hindi", "HDA nli hindi") @@ -43 +43 @@ def test_get_splits(): # sourcery skip: extract-duplicate-method - splits = get_config_splits("classla/copa_hr", "copa_hr") + splits = get_splits("classla/copa_hr", "copa_hr") @@ -46 +46 @@ def test_get_splits(): # sourcery skip: extract-duplicate-method - splits = get_config_splits("mc4", "sn") + splits = get_splits("mc4", "sn")
985e895ec2ae63cfca5f753f9006b1176d68ade0
Sylvain Lesage
2021-07-30T16:02:12
refactor: 💡 remove unused functions
diff --git a/src/datasets_preview_backend/exceptions.py b/src/datasets_preview_backend/exceptions.py index 8e37b3be..d43154e4 100644 --- a/src/datasets_preview_backend/exceptions.py +++ b/src/datasets_preview_backend/exceptions.py @@ -21,16 +20,0 @@ class DatasetBuilderScriptError(Error): -class DatasetBuilderScriptConfigError(Error): - """Exception raised if the builder script fails for this config. - - Attributes: - dataset_id -- the erroneous dataset id - config_name -- the erroneous dataset config_name - """ - - def __init__(self, dataset_id, config_name): - self.dataset_id = dataset_id - self.config_name = config_name - super().__init__( - f"Dataset builder script error. Dataset: '{self.dataset_id}', config: '{self.config_name}'" - ) - - diff --git a/src/datasets_preview_backend/queries.py b/src/datasets_preview_backend/queries.py index f29dde0f..e2e648b1 100644 --- a/src/datasets_preview_backend/queries.py +++ b/src/datasets_preview_backend/queries.py @@ -17 +16,0 @@ from datasets_preview_backend.exceptions import ( - DatasetBuilderScriptConfigError, @@ -24,0 +24,2 @@ from datasets_preview_backend.exceptions import ( +# TODO: log the traces on every caught exception + @@ -52,3 +53 @@ def get_config_splits(dataset_id: str, config_name: str) -> List[str]: - raise DatasetBuilderScriptConfigError( - dataset_id=dataset_id, config_name=config_name - ) + raise DatasetBuilderScriptError(dataset_id=dataset_id) @@ -74 +73 @@ def get_config_splits(dataset_id: str, config_name: str) -> List[str]: -def extract_split_rows(dataset_id: str, config_name: str, split: str, num_rows: int): +def extract_rows(dataset_id: str, config_name: str, split: str, num_rows: int): @@ -82,0 +82,2 @@ def extract_split_rows(dataset_id: str, config_name: str, split: str, num_rows: + except FileNotFoundError as err: + raise DatasetNotFoundError(dataset_id=dataset_id) @@ -101,0 +103,2 @@ def extract_split_rows(dataset_id: str, config_name: str, split: str, num_rows: + elif message.startswith(f"Config name is missing."): + raise ConfigNotFoundError(dataset_id=dataset_id, config_name=config_name) @@ -109,0 +113,2 @@ def extract_split_rows(dataset_id: str, config_name: str, split: str, num_rows: + except (ModuleNotFoundError, RuntimeError, TypeError): + raise DatasetBuilderScriptError(dataset_id=dataset_id) @@ -123,31 +127,0 @@ def extract_split_rows(dataset_id: str, config_name: str, split: str, num_rows: - - -def extract_config_rows(dataset_id: str, config_name: str, num_rows: int): - logging.debug( - f"asked for {num_rows} first rows of dataset {dataset_id} - {config_name}" - ) - - splits = get_config_splits(dataset_id, config_name) - - return { - "dataset_id": dataset_id, - "config_name": config_name, - "splits": { - split: extract_split_rows(dataset_id, config_name, split, num_rows) - for split in splits - }, - } - - -def extract_dataset_rows(dataset_id: str, num_rows: int): - logging.debug(f"asked for {num_rows} first rows of dataset {dataset_id}") - - config_names = get_dataset_config_names(dataset_id) - - return { - "dataset_id": dataset_id, - "configs": { - config_name: extract_config_rows(dataset_id, config_name, num_rows) - for config_name in config_names - }, - } diff --git a/src/datasets_preview_backend/routes.py b/src/datasets_preview_backend/routes.py index d54ee588..9712b3c7 100644 --- a/src/datasets_preview_backend/routes.py +++ b/src/datasets_preview_backend/routes.py @@ -5 +5 @@ from datasets_preview_backend.config import EXTRACT_ROWS_LIMIT -from datasets_preview_backend.queries import extract_dataset_rows +from datasets_preview_backend.queries import extract_split_rows @@ -9 +8,0 @@ from datasets_preview_backend.exceptions import ( - DatasetBuilderScriptConfigError, @@ -23,3 +22,3 @@ async def rows(request: Request): - if "dataset" not in request.query_params: - return PlainTextResponse("Missing query parameter: 'dataset'", status_code=400) - dataset_id: str = request.query_params["dataset"] + dataset_id: str = request.query_params.get("dataset") + config_name: str = request.query_params.get("config") + split_name: str = request.query_params.get("split") @@ -29,0 +29,10 @@ async def rows(request: Request): + if dataset_id is None: + return PlainTextResponse( + "'dataset' is a required query parameter.", status_code=400 + ) + # note: config_name must not be set to refer to the None config_name (the majority of datasets). + if split_name is None: + return PlainTextResponse( + "'split' is a required query parameter.", status_code=400 + ) + @@ -31 +40,3 @@ async def rows(request: Request): - return JSONResponse(extract_dataset_rows(dataset_id, num_rows)) + return JSONResponse( + extract_split_rows(dataset_id, config_name, split_name, num_rows) + ) @@ -36 +46,0 @@ async def rows(request: Request): - DatasetBuilderScriptConfigError, diff --git a/tests/test_main.py b/tests/test_main.py index ebe539dd..46ff0365 100644 --- a/tests/test_main.py +++ b/tests/test_main.py @@ -5 +4,0 @@ from datasets_preview_backend.queries import ( - DatasetBuilderScriptConfigError, @@ -13,3 +12 @@ from datasets_preview_backend.queries import ( - extract_dataset_rows, - extract_config_rows, - extract_split_rows, + extract_rows, @@ -58 +55 @@ def test_extract_split_rows(): - extract = extract_split_rows(dataset_id, config_name, split, num_rows) + extract = extract_rows(dataset_id, config_name, split, num_rows) @@ -73 +70 @@ def test_extract_split_rows_num_rows(): - extract = extract_split_rows(dataset_id, config_name, split, num_rows) + extract = extract_rows(dataset_id, config_name, split, num_rows) @@ -81 +78 @@ def test_extract_unknown_config(): - extract_config_rows("glue", "doesnotexist", 100) + extract_rows("glue", "doesnotexist", "train", 100) @@ -83 +80 @@ def test_extract_unknown_config(): - extract_split_rows("glue", "doesnotexist", "train", 100) + extract_rows("glue", None, "train", 100) @@ -88,42 +85 @@ def test_extract_unknown_split(): - extract_split_rows("glue", "ax", "train", 100) - - -def test_extract_config_rows(): - dataset_id = "glue" - config_name = "cola" - num_rows = 100 - extract = extract_config_rows(dataset_id, config_name, num_rows) - assert "dataset_id" in extract and extract["dataset_id"] == dataset_id - assert "config_name" in extract and extract["config_name"] == config_name - assert "splits" in extract - splits = extract["splits"] - assert len(splits) == 3 - assert "train" in splits - split = splits["train"] - rows = split["rows"] - assert len(rows) == 100 - assert ( - rows[0]["sentence"] - == "Our friends won't buy this analysis, let alone the next one we propose." - ) - - -def test_extract_dataset(): - dataset_id = "acronym_identification" - num_rows = 100 - extract = extract_dataset_rows(dataset_id, num_rows) - assert "dataset_id" in extract and extract["dataset_id"] == dataset_id - assert "configs" in extract - configs = extract["configs"] - assert None in configs - assert len(configs) == 1 - assert len(configs[None]["splits"]["train"]["rows"]) == num_rows - - dataset_id = "adversarial_qa" - num_rows = 100 - extract = extract_dataset_rows(dataset_id, num_rows) - configs = extract["configs"] - assert len(configs) == 4 - assert "adversarialQA" in configs - assert len(configs["adversarialQA"]["splits"]["train"]["rows"]) == num_rows - assert configs["adversarialQA"]["splits"]["train"]["rows"][0]["title"] == "Brain" + extract_rows("glue", "ax", "train", 100) @@ -134 +90 @@ def test_extract_unknown_dataset(): - extract_dataset_rows("doesnotexist", 100) + extract_rows("doesnotexist", None, "train", 100) @@ -136,6 +92 @@ def test_extract_unknown_dataset(): - extract_dataset_rows("AConsApart/anime_subtitles_DialoGPT", 100) - - -def test_extract_unknown_config(): - with pytest.raises(ConfigNotFoundError): - extract_config_rows("glue", "doesnotexist", 100) + extract_rows("AConsApart/anime_subtitles_DialoGPT", None, "train", 100) @@ -146 +97 @@ def test_extract_bogus_dataset(): - extract_dataset_rows("TimTreasure4/Test", 100) + extract_rows("TimTreasure4/Test", None, "train", 100) @@ -150,4 +101,4 @@ def test_extract_bogus_config(): - with pytest.raises(DatasetBuilderScriptConfigError): - extract_config_rows("Valahaar/wsdmt", None, 10) - with pytest.raises(DatasetBuilderScriptConfigError): - extract_config_rows("nateraw/image-folder", None, 10) + with pytest.raises(DatasetBuilderScriptError): + extract_rows("Valahaar/wsdmt", None, "train", 10) + with pytest.raises(DatasetBuilderScriptError): + extract_rows("nateraw/image-folder", None, "train", 10) @@ -164 +115 @@ def test_extract_not_implemented_split(): - extract_split_rows("ade_corpus_v2", "Ade_corpus_v2_classification", "train", 10) + extract_rows("ade_corpus_v2", "Ade_corpus_v2_classification", "train", 10) @@ -169 +120 @@ def test_tar_gz_extension(): - extract_split_rows("air_dialogue", "air_dialogue_data", "train", 10) + extract_rows("air_dialogue", "air_dialogue_data", "train", 10)
b2ab4bdea476dff3badda501ca442d64a221743e
Sylvain Lesage
2021-07-30T15:19:18
feat: 🎸 change endpoint /extract to /rows
diff --git a/src/datasets_preview_backend/main.py b/src/datasets_preview_backend/main.py index 9821cc8a..c636acc4 100644 --- a/src/datasets_preview_backend/main.py +++ b/src/datasets_preview_backend/main.py @@ -6 +6 @@ from datasets_preview_backend.config import PORT -from datasets_preview_backend.routes import healthcheck, extract +from datasets_preview_backend.routes import healthcheck, rows @@ -13 +13 @@ def start(): - Route("/{dataset_id:path}/extract", endpoint=extract), + Route("/rows", endpoint=rows), diff --git a/src/datasets_preview_backend/routes.py b/src/datasets_preview_backend/routes.py index a3abd46f..d54ee588 100644 --- a/src/datasets_preview_backend/routes.py +++ b/src/datasets_preview_backend/routes.py @@ -22,2 +22,4 @@ async def healthcheck(_: Request): -async def extract(request: Request): - dataset_id: str = request.path_params["dataset_id"] +async def rows(request: Request): + if "dataset" not in request.query_params: + return PlainTextResponse("Missing query parameter: 'dataset'", status_code=400) + dataset_id: str = request.query_params["dataset"]
f846a7cb9b7c93925c42f163e0c8d06cc30c995b
Sylvain Lesage
2021-07-30T15:10:29
refactor: 💡 split code into multiple files
diff --git a/quality/test_datasets.py b/quality/test_datasets.py index c49956ab..519c9e25 100644 --- a/quality/test_datasets.py +++ b/quality/test_datasets.py @@ -0,0 +1 @@ +from datasets import list_datasets @@ -3 +3,0 @@ import time -from tqdm import tqdm @@ -6 +5,0 @@ from tqdm.contrib.concurrent import process_map -from datasets import list_datasets @@ -8 +7 @@ from datasets import list_datasets -from datasets_preview_backend.main import ( +from datasets_preview_backend.queries import ( diff --git a/src/datasets_preview_backend/config.py b/src/datasets_preview_backend/config.py new file mode 100644 index 00000000..1018acc2 --- /dev/null +++ b/src/datasets_preview_backend/config.py @@ -0,0 +1,11 @@ +import os +from datasets_preview_backend.utils import get_int_value + +DEFAULT_PORT = 8000 +DEFAULT_EXTRACT_ROWS_LIMIT = 100 + + +PORT = get_int_value(d=os.environ, key="DPB_PORT", default=DEFAULT_PORT) +EXTRACT_ROWS_LIMIT = get_int_value( + d=os.environ, key="DPB_EXTRACT_ROWS_LIMIT", default=DEFAULT_EXTRACT_ROWS_LIMIT +) diff --git a/src/datasets_preview_backend/main.py b/src/datasets_preview_backend/main.py index 4b939715..9821cc8a 100644 --- a/src/datasets_preview_backend/main.py +++ b/src/datasets_preview_backend/main.py @@ -1,7 +0,0 @@ -import logging -import os -import re - -from datasets.builder import DatasetBuilder -from typing import List - @@ -9,2 +1,0 @@ from starlette.applications import Starlette -from starlette.requests import Request -from starlette.responses import PlainTextResponse, JSONResponse @@ -14,190 +5,2 @@ import uvicorn -from datasets import ( - IterableDataset, - load_dataset, - load_dataset_builder, - prepare_module, - import_main_class, -) -from datasets.utils.streaming_download_manager import StreamingDownloadManager - -from datasets_preview_backend.exceptions import ( - DatasetBuilderScriptError, - DatasetBuilderScriptConfigError, - DatasetBuilderScriptConfigNoSplitsError, - DatasetNotFoundError, - ConfigNotFoundError, - SplitError, - SplitNotImplementedError, -) - -DEFAULT_PORT = 8000 -DEFAULT_EXTRACT_ROWS_LIMIT = 100 - - -def get_int_value(d, key, default): - try: - value = int(d.get(key)) - except TypeError: - value = default - return value - - -PORT = get_int_value(d=os.environ, key="DPB_PORT", default=DEFAULT_PORT) -EXTRACT_ROWS_LIMIT = get_int_value( - d=os.environ, key="DPB_EXTRACT_ROWS_LIMIT", default=DEFAULT_EXTRACT_ROWS_LIMIT -) - - -async def healthcheck(request: Request): - return PlainTextResponse("ok") - - -def get_dataset_config_names(dataset_id: str) -> List[str]: - try: - module_path, *_ = prepare_module(dataset_id, dataset=True) - builder_cls = import_main_class(module_path, dataset=True) - except FileNotFoundError as err: - raise DatasetNotFoundError(dataset_id=dataset_id) - except (ModuleNotFoundError): - raise DatasetBuilderScriptError(dataset_id=dataset_id) - - config_names = [c.name for c in builder_cls.BUILDER_CONFIGS] or [None] - logging.debug( - f"The dataset builder has {len(config_names)} configs: {config_names}" - ) - return config_names - - -def get_config_splits(dataset_id: str, config_name: str) -> List[str]: - try: - builder = load_dataset_builder(dataset_id, name=config_name) - except ValueError as err: - message = str(err) - if message.startswith(f"BuilderConfig {config_name} not found"): - raise ConfigNotFoundError(dataset_id=dataset_id, config_name=config_name) - else: - raise - except (ModuleNotFoundError, RuntimeError, TypeError): - raise DatasetBuilderScriptConfigError( - dataset_id=dataset_id, config_name=config_name - ) - - if builder.info.splits is None: - # try to get them from _split_generators - try: - splits = [ - split_generator.name - for split_generator in builder._split_generators( - StreamingDownloadManager(base_path=builder.base_path) - ) - ] - except: - raise DatasetBuilderScriptConfigNoSplitsError( - dataset_id=dataset_id, config_name=config_name - ) - else: - splits = list(builder.info.splits.keys()) - return splits - - -def extract_split_rows(dataset_id: str, config_name: str, split: str, num_rows: int): - logging.debug( - f"asked for {num_rows} first rows of dataset {dataset_id} - {config_name} - {split}" - ) - - try: - dataset: IterableDataset = load_dataset( - dataset_id, name=config_name, split=split, streaming=True - ) - except NotImplementedError as err: - # TODO: check what has changed once https://github.com/huggingface/datasets/pull/2662 is merged - try: - regex = re.compile( - r"Extraction protocol for file at .*?((\.\w+)?\.\w+)* is not implemented yet" - ) - extension = regex.match(str(err)).group(1) - except: - extension = None - raise SplitNotImplementedError( - dataset_id=dataset_id, - config_name=config_name, - split=split, - extension=extension, - ) - except ValueError as err: - message = str(err) - if message.startswith(f"BuilderConfig {config_name} not found"): - raise ConfigNotFoundError(dataset_id=dataset_id, config_name=config_name) - elif message.startswith(f'Unknown split "{split}".') or message.startswith( - f"Bad split: {split}." - ): - raise SplitError( - dataset_id=dataset_id, config_name=config_name, split=split - ) - else: - raise - - rows = list(dataset.take(num_rows)) - if len(rows) != num_rows: - logging.warning( - f"could not read all the required rows ({len(rows)} / {num_rows}) from dataset {dataset_id} - {config_name} - {split}" - ) - - return { - "dataset_id": dataset_id, - "config_name": config_name, - "split": split, - "rows": rows, - } - - -def extract_config_rows(dataset_id: str, config_name: str, num_rows: int): - logging.debug( - f"asked for {num_rows} first rows of dataset {dataset_id} - {config_name}" - ) - - splits = get_config_splits(dataset_id, config_name) - - return { - "dataset_id": dataset_id, - "config_name": config_name, - "splits": { - split: extract_split_rows(dataset_id, config_name, split, num_rows) - for split in splits - }, - } - - -def extract_dataset_rows(dataset_id: str, num_rows: int): - logging.debug(f"asked for {num_rows} first rows of dataset {dataset_id}") - - config_names = get_dataset_config_names(dataset_id) - - return { - "dataset_id": dataset_id, - "configs": { - config_name: extract_config_rows(dataset_id, config_name, num_rows) - for config_name in config_names - }, - } - - -async def extract(request: Request): - dataset_id: str = request.path_params["dataset_id"] - num_rows = get_int_value( - d=request.query_params, key="rows", default=EXTRACT_ROWS_LIMIT - ) - - try: - return JSONResponse(extract_dataset_rows(dataset_id, num_rows)) - except (DatasetNotFoundError, ConfigNotFoundError) as err: - return PlainTextResponse(err.message, status_code=404) - except ( - DatasetBuilderScriptError, - DatasetBuilderScriptConfigError, - DatasetBuilderScriptConfigNoSplitsError, - SplitError, - SplitNotImplementedError, - ) as err: - return PlainTextResponse(err.message, status_code=400) - # other exceptions will generate a 500 response +from datasets_preview_backend.config import PORT +from datasets_preview_backend.routes import healthcheck, extract diff --git a/src/datasets_preview_backend/queries.py b/src/datasets_preview_backend/queries.py new file mode 100644 index 00000000..f29dde0f --- /dev/null +++ b/src/datasets_preview_backend/queries.py @@ -0,0 +1,153 @@ +import re +import logging + +from typing import List + +from datasets import ( + IterableDataset, + load_dataset, + load_dataset_builder, + prepare_module, + import_main_class, +) +from datasets.utils.streaming_download_manager import StreamingDownloadManager + +from datasets_preview_backend.exceptions import ( + DatasetBuilderScriptError, + DatasetBuilderScriptConfigError, + DatasetBuilderScriptConfigNoSplitsError, + DatasetNotFoundError, + ConfigNotFoundError, + SplitError, + SplitNotImplementedError, +) + + +def get_dataset_config_names(dataset_id: str) -> List[str]: + try: + module_path, *_ = prepare_module(dataset_id, dataset=True) + builder_cls = import_main_class(module_path, dataset=True) + except FileNotFoundError as err: + raise DatasetNotFoundError(dataset_id=dataset_id) + except (ModuleNotFoundError): + raise DatasetBuilderScriptError(dataset_id=dataset_id) + + config_names = [c.name for c in builder_cls.BUILDER_CONFIGS] or [None] + logging.debug( + f"The dataset builder has {len(config_names)} configs: {config_names}" + ) + return config_names + + +def get_config_splits(dataset_id: str, config_name: str) -> List[str]: + try: + builder = load_dataset_builder(dataset_id, name=config_name) + except ValueError as err: + message = str(err) + if message.startswith(f"BuilderConfig {config_name} not found"): + raise ConfigNotFoundError(dataset_id=dataset_id, config_name=config_name) + else: + raise + except (ModuleNotFoundError, RuntimeError, TypeError): + raise DatasetBuilderScriptConfigError( + dataset_id=dataset_id, config_name=config_name + ) + + if builder.info.splits is None: + # try to get them from _split_generators + try: + splits = [ + split_generator.name + for split_generator in builder._split_generators( + StreamingDownloadManager(base_path=builder.base_path) + ) + ] + except: + raise DatasetBuilderScriptConfigNoSplitsError( + dataset_id=dataset_id, config_name=config_name + ) + else: + splits = list(builder.info.splits.keys()) + return splits + + +def extract_split_rows(dataset_id: str, config_name: str, split: str, num_rows: int): + logging.debug( + f"asked for {num_rows} first rows of dataset {dataset_id} - {config_name} - {split}" + ) + + try: + dataset: IterableDataset = load_dataset( + dataset_id, name=config_name, split=split, streaming=True + ) + except NotImplementedError as err: + # TODO: check what has changed once https://github.com/huggingface/datasets/pull/2662 is merged + try: + regex = re.compile( + r"Extraction protocol for file at .*?((\.\w+)?\.\w+)* is not implemented yet" + ) + extension = regex.match(str(err)).group(1) + except: + extension = None + raise SplitNotImplementedError( + dataset_id=dataset_id, + config_name=config_name, + split=split, + extension=extension, + ) + except ValueError as err: + message = str(err) + if message.startswith(f"BuilderConfig {config_name} not found"): + raise ConfigNotFoundError(dataset_id=dataset_id, config_name=config_name) + elif message.startswith(f'Unknown split "{split}".') or message.startswith( + f"Bad split: {split}." + ): + raise SplitError( + dataset_id=dataset_id, config_name=config_name, split=split + ) + else: + raise + + rows = list(dataset.take(num_rows)) + if len(rows) != num_rows: + logging.warning( + f"could not read all the required rows ({len(rows)} / {num_rows}) from dataset {dataset_id} - {config_name} - {split}" + ) + + return { + "dataset_id": dataset_id, + "config_name": config_name, + "split": split, + "rows": rows, + } + + +def extract_config_rows(dataset_id: str, config_name: str, num_rows: int): + logging.debug( + f"asked for {num_rows} first rows of dataset {dataset_id} - {config_name}" + ) + + splits = get_config_splits(dataset_id, config_name) + + return { + "dataset_id": dataset_id, + "config_name": config_name, + "splits": { + split: extract_split_rows(dataset_id, config_name, split, num_rows) + for split in splits + }, + } + + +def extract_dataset_rows(dataset_id: str, num_rows: int): + logging.debug(f"asked for {num_rows} first rows of dataset {dataset_id}") + + config_names = get_dataset_config_names(dataset_id) + + return { + "dataset_id": dataset_id, + "configs": { + config_name: extract_config_rows(dataset_id, config_name, num_rows) + for config_name in config_names + }, + } diff --git a/src/datasets_preview_backend/routes.py b/src/datasets_preview_backend/routes.py new file mode 100644 index 00000000..a3abd46f --- /dev/null +++ b/src/datasets_preview_backend/routes.py @@ -0,0 +1,40 @@ +from starlette.requests import Request +from starlette.responses import PlainTextResponse, JSONResponse + +from datasets_preview_backend.config import EXTRACT_ROWS_LIMIT +from datasets_preview_backend.queries import extract_dataset_rows +from datasets_preview_backend.utils import get_int_value +from datasets_preview_backend.exceptions import ( + DatasetBuilderScriptError, + DatasetBuilderScriptConfigError, + DatasetBuilderScriptConfigNoSplitsError, + DatasetNotFoundError, + ConfigNotFoundError, + SplitError, + SplitNotImplementedError, +) + + +async def healthcheck(_: Request): + return PlainTextResponse("ok") + + +async def extract(request: Request): + dataset_id: str = request.path_params["dataset_id"] + num_rows = get_int_value( + d=request.query_params, key="rows", default=EXTRACT_ROWS_LIMIT + ) + + try: + return JSONResponse(extract_dataset_rows(dataset_id, num_rows)) + except (DatasetNotFoundError, ConfigNotFoundError) as err: + return PlainTextResponse(err.message, status_code=404) + except ( + DatasetBuilderScriptError, + DatasetBuilderScriptConfigError, + DatasetBuilderScriptConfigNoSplitsError, + SplitError, + SplitNotImplementedError, + ) as err: + return PlainTextResponse(err.message, status_code=400) + # other exceptions will generate a 500 response diff --git a/src/datasets_preview_backend/utils.py b/src/datasets_preview_backend/utils.py new file mode 100644 index 00000000..a9e44207 --- /dev/null +++ b/src/datasets_preview_backend/utils.py @@ -0,0 +1,6 @@ +def get_int_value(d, key, default): + try: + value = int(d.get(key)) + except TypeError: + value = default + return value diff --git a/tests/test_main.py b/tests/test_main.py index 531e1577..ebe539dd 100644 --- a/tests/test_main.py +++ b/tests/test_main.py @@ -3 +3 @@ import pytest -from datasets_preview_backend.main import ( +from datasets_preview_backend.queries import (
c7c93f7f38837187c4cbe30f9d03b432e6d9d8da
Sylvain Lesage
2021-07-30T13:47:45
fix: 🐛 detect .tar.gz extension (any double extension)
diff --git a/src/datasets_preview_backend/main.py b/src/datasets_preview_backend/main.py index 969f6c9c..4b939715 100644 --- a/src/datasets_preview_backend/main.py +++ b/src/datasets_preview_backend/main.py @@ -113 +113 @@ def extract_split_rows(dataset_id: str, config_name: str, split: str, num_rows: - # try to parse the unimplemented file extension + # TODO: check what has changed once https://github.com/huggingface/datasets/pull/2662 is merged @@ -116 +116 @@ def extract_split_rows(dataset_id: str, config_name: str, split: str, num_rows: - r"Extraction protocol for file at .*(\.[\w]*) is not implemented yet" + r"Extraction protocol for file at .*?((\.\w+)?\.\w+)* is not implemented yet" diff --git a/tests/test_main.py b/tests/test_main.py index 9d9c0c06..531e1577 100644 --- a/tests/test_main.py +++ b/tests/test_main.py @@ -164,0 +165,5 @@ def test_extract_not_implemented_split(): + + +def test_tar_gz_extension(): + with pytest.raises(SplitNotImplementedError): + extract_split_rows("air_dialogue", "air_dialogue_data", "train", 10)
dd9af67708997931161df9facabe9e934b5227f3
Sylvain Lesage
2021-07-30T11:02:55
test: 💍 send 20 jobs to every worker
diff --git a/quality/test_datasets.py b/quality/test_datasets.py index 3c9fb9ed..c49956ab 100644 --- a/quality/test_datasets.py +++ b/quality/test_datasets.py @@ -87,2 +87 @@ def export_all_datasets_exceptions(): - get_config_names_report, - dataset_ids, + get_config_names_report, dataset_ids, chunksize=20 @@ -100 +99,4 @@ def export_all_datasets_exceptions(): - get_split_names_report, split_names_dataset_ids, split_names_config_names + get_split_names_report, + split_names_dataset_ids, + split_names_config_names, + chunksize=20, @@ -114 +116,5 @@ def export_all_datasets_exceptions(): - get_rows_report, rows_dataset_ids, rows_config_names, rows_split_names + get_rows_report, + rows_dataset_ids, + rows_config_names, + rows_split_names, + chunksize=20,
4ed7764bac54c333471bd3d306b41d3c477c0b16
Sylvain Lesage
2021-07-30T10:42:44
feat: 🎸 implement a fallback method to get the splits
diff --git a/src/datasets_preview_backend/main.py b/src/datasets_preview_backend/main.py index 98b64923..969f6c9c 100644 --- a/src/datasets_preview_backend/main.py +++ b/src/datasets_preview_backend/main.py @@ -20,0 +21 @@ from datasets import ( +from datasets.utils.streaming_download_manager import StreamingDownloadManager @@ -85,3 +86,12 @@ def get_config_splits(dataset_id: str, config_name: str) -> List[str]: - raise DatasetBuilderScriptConfigNoSplitsError( - dataset_id=dataset_id, config_name=config_name - ) + # try to get them from _split_generators + try: + splits = [ + split_generator.name + for split_generator in builder._split_generators( + StreamingDownloadManager(base_path=builder.base_path) + ) + ] + except: + raise DatasetBuilderScriptConfigNoSplitsError( + dataset_id=dataset_id, config_name=config_name + ) @@ -89 +99 @@ def get_config_splits(dataset_id: str, config_name: str) -> List[str]: - splits = builder.info.splits.keys() + splits = list(builder.info.splits.keys()) diff --git a/tests/test_main.py b/tests/test_main.py index 3d5360bb..9d9c0c06 100644 --- a/tests/test_main.py +++ b/tests/test_main.py @@ -6 +6 @@ from datasets_preview_backend.main import ( - DatasetBuilderScriptConfigNoSplitsError, + # DatasetBuilderScriptConfigNoSplitsError, @@ -38,0 +39,13 @@ def test_get_splits(): # sourcery skip: extract-duplicate-method + # uses the fallback to call "builder._split_generators" + splits = get_config_splits("hda_nli_hindi", "HDA nli hindi") + assert len(splits) == 3 + assert "train" in splits + assert "validation" in splits + assert "test" in splits + + splits = get_config_splits("classla/copa_hr", "copa_hr") + assert len(splits) == 3 + + splits = get_config_splits("mc4", "sn") + assert len(splits) == 2 + @@ -67 +80 @@ def test_extract_unknown_config(): - with pytest.raises(ConfigNameError): + with pytest.raises(ConfigNotFoundError): @@ -69 +82 @@ def test_extract_unknown_config(): - with pytest.raises(ConfigNameError): + with pytest.raises(ConfigNotFoundError): @@ -143,9 +156,4 @@ def test_extract_bogus_config(): -def test_extract_bogus_splits(): - with pytest.raises(DatasetBuilderScriptConfigNoSplitsError): - extract_config_rows("hda_nli_hindi", "HDA nli hindi", 10) - with pytest.raises(DatasetBuilderScriptConfigNoSplitsError): - extract_config_rows("mc4", "sn", 10) - with pytest.raises(DatasetBuilderScriptConfigNoSplitsError): - extract_dataset_rows("classla/copa_hr", 100) - with pytest.raises(DatasetBuilderScriptConfigNoSplitsError): - extract_config_rows("classla/copa_hr", "copa_hr", 100) +# def test_extract_bogus_splits(): +# not sure if we have an example of such an error +# with pytest.raises(DatasetBuilderScriptConfigNoSplitsError): +# extract_config_rows("mc4", "sn", 10)
a3585e395084ac2a48b8aca28f06eb7cf1fde56c
Sylvain Lesage
2021-07-30T10:20:37
feat: 🎸 capture config script and not implemented exceptions
diff --git a/Makefile b/Makefile index 252fda1e..b1d44a97 100644 --- a/Makefile +++ b/Makefile @@ -10 +10 @@ test: - poetry run python -m pytest tests + poetry run python -m pytest -x tests diff --git a/src/datasets_preview_backend/exceptions.py b/src/datasets_preview_backend/exceptions.py index 59f59a47..8e37b3be 100644 --- a/src/datasets_preview_backend/exceptions.py +++ b/src/datasets_preview_backend/exceptions.py @@ -36,0 +37,16 @@ class DatasetBuilderScriptConfigError(Error): +class DatasetBuilderScriptConfigNoSplitsError(Error): + """Exception raised if the builder script fails for this config. + + Attributes: + dataset_id -- the erroneous dataset id + config_name -- the erroneous dataset config_name + """ + + def __init__(self, dataset_id, config_name): + self.dataset_id = dataset_id + self.config_name = config_name + super().__init__( + f"Dataset builder script error: missing .info.splits. Dataset: '{self.dataset_id}', config: '{self.config_name}'" + ) + + @@ -80,0 +97,23 @@ class SplitError(Error): + + +class SplitNotImplementedError(Error): + """Exception raised for NotImplementedError in the split. + + Attributes: + dataset_id -- the erroneous dataset id + config_name -- the erroneous dataset config_name + split -- the erroneous dataset split + extension -- the file extension not implemented yet + """ + + def __init__(self, dataset_id, config_name, split, extension): + self.dataset_id = dataset_id + self.config_name = config_name + self.split = split + self.extension = extension + extension_str = ( + "" if self.extension is None else f" for extension '{self.extension}'" + ) + super().__init__( + f"Extraction protocol not implemented{extension_str}. Dataset: '{self.dataset_id}', config: '{self.config_name}', script: '{self.split}'" + ) diff --git a/src/datasets_preview_backend/main.py b/src/datasets_preview_backend/main.py index 6772533f..98b64923 100644 --- a/src/datasets_preview_backend/main.py +++ b/src/datasets_preview_backend/main.py @@ -2,0 +3 @@ import os +import re @@ -23,0 +25 @@ from datasets_preview_backend.exceptions import ( + DatasetBuilderScriptConfigNoSplitsError, @@ -26,0 +29 @@ from datasets_preview_backend.exceptions import ( + SplitNotImplementedError, @@ -76 +79 @@ def get_config_splits(dataset_id: str, config_name: str) -> List[str]: - except ModuleNotFoundError: + except (ModuleNotFoundError, RuntimeError, TypeError): @@ -82 +85 @@ def get_config_splits(dataset_id: str, config_name: str) -> List[str]: - raise DatasetBuilderScriptConfigError( + raise DatasetBuilderScriptConfigNoSplitsError( @@ -85 +88,3 @@ def get_config_splits(dataset_id: str, config_name: str) -> List[str]: - return builder.info.splits.keys() + else: + splits = builder.info.splits.keys() + return splits @@ -96,0 +102,15 @@ def extract_split_rows(dataset_id: str, config_name: str, split: str, num_rows: + except NotImplementedError as err: + # try to parse the unimplemented file extension + try: + regex = re.compile( + r"Extraction protocol for file at .*(\.[\w]*) is not implemented yet" + ) + extension = regex.match(str(err)).group(1) + except: + extension = None + raise SplitNotImplementedError( + dataset_id=dataset_id, + config_name=config_name, + split=split, + extension=extension, + ) @@ -165 +185,7 @@ async def extract(request: Request): - except (DatasetBuilderScriptError, DatasetBuilderScriptConfigError) as err: + except ( + DatasetBuilderScriptError, + DatasetBuilderScriptConfigError, + DatasetBuilderScriptConfigNoSplitsError, + SplitError, + SplitNotImplementedError, + ) as err: diff --git a/tests/test_main.py b/tests/test_main.py index 2295f516..3d5360bb 100644 --- a/tests/test_main.py +++ b/tests/test_main.py @@ -5,0 +6 @@ from datasets_preview_backend.main import ( + DatasetBuilderScriptConfigNoSplitsError, @@ -8,0 +10 @@ from datasets_preview_backend.main import ( + SplitNotImplementedError, @@ -136 +138 @@ def test_extract_bogus_config(): - extract_dataset_rows("classla/copa_hr", 100) + extract_config_rows("Valahaar/wsdmt", None, 10) @@ -137,0 +140,11 @@ def test_extract_bogus_config(): + extract_config_rows("nateraw/image-folder", None, 10) + + +def test_extract_bogus_splits(): + with pytest.raises(DatasetBuilderScriptConfigNoSplitsError): + extract_config_rows("hda_nli_hindi", "HDA nli hindi", 10) + with pytest.raises(DatasetBuilderScriptConfigNoSplitsError): + extract_config_rows("mc4", "sn", 10) + with pytest.raises(DatasetBuilderScriptConfigNoSplitsError): + extract_dataset_rows("classla/copa_hr", 100) + with pytest.raises(DatasetBuilderScriptConfigNoSplitsError): @@ -138,0 +152,5 @@ def test_extract_bogus_config(): + + +def test_extract_not_implemented_split(): + with pytest.raises(SplitNotImplementedError): + extract_split_rows("ade_corpus_v2", "Ade_corpus_v2_classification", "train", 10)
aa708005121624b63902d584f6afc492715dd74b
Sylvain Lesage
2021-07-30T08:50:34
feat: 🎸 catch more exceptions
diff --git a/Makefile b/Makefile index 08c4239b..252fda1e 100644 --- a/Makefile +++ b/Makefile @@ -10 +10 @@ test: - poetry run python -m pytest + poetry run python -m pytest tests diff --git a/src/datasets_preview_backend/exceptions.py b/src/datasets_preview_backend/exceptions.py new file mode 100644 index 00000000..59f59a47 --- /dev/null +++ b/src/datasets_preview_backend/exceptions.py @@ -0,0 +1,80 @@ +class Error(Exception): + """Base class for exceptions in this module.""" + + def __init__(self, message): + self.message = message + super().__init__(message) + + +class DatasetBuilderScriptError(Error): + """Exception raised if the dataset script fails. + + Attributes: + dataset_id -- the erroneous dataset id + """ + + def __init__(self, dataset_id): + self.dataset_id = dataset_id + super().__init__(f"Dataset builder script error. Dataset: '{self.dataset_id}'") + + +class DatasetBuilderScriptConfigError(Error): + """Exception raised if the builder script fails for this config. + + Attributes: + dataset_id -- the erroneous dataset id + config_name -- the erroneous dataset config_name + """ + + def __init__(self, dataset_id, config_name): + self.dataset_id = dataset_id + self.config_name = config_name + super().__init__( + f"Dataset builder script error. Dataset: '{self.dataset_id}', config: '{self.config_name}'" + ) + + +class DatasetNotFoundError(Error): + """Exception raised if a dataset has not been found. + + Attributes: + dataset_id -- the erroneous dataset id + """ + + def __init__(self, dataset_id): + self.dataset_id = dataset_id + super().__init__(f"Dataset not found. Dataset: '{self.dataset_id}'") + + +class ConfigNotFoundError(Error): + """Exception raised for config builder not found. + + Attributes: + dataset_id -- the erroneous dataset id + config_name -- the erroneous dataset config_name + """ + + def __init__(self, dataset_id, config_name): + self.dataset_id = dataset_id + self.config_name = config_name + super().__init__( + f"Config not found. Dataset: '{self.dataset_id}', config: '{self.config_name}'" + ) + + +class SplitError(Error): + """Exception raised for errors in the split. + + Attributes: + dataset_id -- the erroneous dataset id + config_name -- the erroneous dataset config_name + split -- the erroneous dataset split + """ + + def __init__(self, dataset_id, config_name, split): + self.dataset_id = dataset_id + self.config_name = config_name + self.split = split + super().__init__( + f"Split error. Dataset: '{self.dataset_id}', config: '{self.config_name}', script: '{self.split}'" + ) diff --git a/src/datasets_preview_backend/main.py b/src/datasets_preview_backend/main.py index 798fc570..6772533f 100644 --- a/src/datasets_preview_backend/main.py +++ b/src/datasets_preview_backend/main.py @@ -14 +13,0 @@ from datasets import ( - Dataset, @@ -21,0 +21,8 @@ from datasets import ( +from datasets_preview_backend.exceptions import ( + DatasetBuilderScriptError, + DatasetBuilderScriptConfigError, + DatasetNotFoundError, + ConfigNotFoundError, + SplitError, +) + @@ -26,28 +32,0 @@ DEFAULT_EXTRACT_ROWS_LIMIT = 100 -class Error(Exception): - """Base class for exceptions in this module.""" - - pass - - -class ConfigNameError(Error): - """Exception raised for errors in the config name. - - Attributes: - config_name -- the erroneous dataset config_name - """ - - def __init__(self, config_name): - self.config_name = config_name - - -class SplitError(Error): - """Exception raised for errors in the split name. - - Attributes: - split -- the erroneous dataset split - """ - - def __init__(self, split): - self.split = split - - @@ -73,2 +52,8 @@ def get_dataset_config_names(dataset_id: str) -> List[str]: - module_path, *_ = prepare_module(dataset_id, dataset=True) - builder_cls = import_main_class(module_path, dataset=True) + try: + module_path, *_ = prepare_module(dataset_id, dataset=True) + builder_cls = import_main_class(module_path, dataset=True) + except FileNotFoundError as err: + raise DatasetNotFoundError(dataset_id=dataset_id) + except (ModuleNotFoundError): + raise DatasetBuilderScriptError(dataset_id=dataset_id) + @@ -88 +73 @@ def get_config_splits(dataset_id: str, config_name: str) -> List[str]: - raise ConfigNameError(config_name=config_name) + raise ConfigNotFoundError(dataset_id=dataset_id, config_name=config_name) @@ -90,0 +76,9 @@ def get_config_splits(dataset_id: str, config_name: str) -> List[str]: + except ModuleNotFoundError: + raise DatasetBuilderScriptConfigError( + dataset_id=dataset_id, config_name=config_name + ) + + if builder.info.splits is None: + raise DatasetBuilderScriptConfigError( + dataset_id=dataset_id, config_name=config_name + ) @@ -106 +100 @@ def extract_split_rows(dataset_id: str, config_name: str, split: str, num_rows: - raise ConfigNameError(config_name=config_name) + raise ConfigNotFoundError(dataset_id=dataset_id, config_name=config_name) @@ -110 +104,3 @@ def extract_split_rows(dataset_id: str, config_name: str, split: str, num_rows: - raise SplitError(split=split) + raise SplitError( + dataset_id=dataset_id, config_name=config_name, split=split + ) @@ -167,2 +163,4 @@ async def extract(request: Request): - except FileNotFoundError as e: - return PlainTextResponse("Dataset not found", status_code=404) + except (DatasetNotFoundError, ConfigNotFoundError) as err: + return PlainTextResponse(err.message, status_code=404) + except (DatasetBuilderScriptError, DatasetBuilderScriptConfigError) as err: + return PlainTextResponse(err.message, status_code=400) diff --git a/tests/test_main.py b/tests/test_main.py index 28c369c5..2295f516 100644 --- a/tests/test_main.py +++ b/tests/test_main.py @@ -4 +4,4 @@ from datasets_preview_backend.main import ( - ConfigNameError, + DatasetBuilderScriptError, + DatasetBuilderScriptConfigError, + ConfigNotFoundError, + DatasetNotFoundError, @@ -115 +118 @@ def test_extract_unknown_dataset(): - with pytest.raises(FileNotFoundError): + with pytest.raises(DatasetNotFoundError): @@ -116,0 +120,19 @@ def test_extract_unknown_dataset(): + with pytest.raises(DatasetNotFoundError): + extract_dataset_rows("AConsApart/anime_subtitles_DialoGPT", 100) + + +def test_extract_unknown_config(): + with pytest.raises(ConfigNotFoundError): + extract_config_rows("glue", "doesnotexist", 100) + + +def test_extract_bogus_dataset(): + with pytest.raises(DatasetBuilderScriptError): + extract_dataset_rows("TimTreasure4/Test", 100) + + +def test_extract_bogus_config(): + with pytest.raises(DatasetBuilderScriptConfigError): + extract_dataset_rows("classla/copa_hr", 100) + with pytest.raises(DatasetBuilderScriptConfigError): + extract_config_rows("classla/copa_hr", "copa_hr", 100)
b3ec3eee2186926a9e00db7105368aa87bb842ac
Sylvain Lesage
2021-07-29T13:38:04
fix: 🐛 fix all ImportError exceptions for the current datasets
diff --git a/poetry.lock b/poetry.lock index 80d02e45..df2f3a97 100644 --- a/poetry.lock +++ b/poetry.lock @@ -0,0 +1,11 @@ +[[package]] +name = "absl-py" +version = "0.13.0" +description = "Abseil Python Common Libraries, see https://github.com/abseil/abseil-py." +category = "main" +optional = false +python-versions = "*" + +[package.dependencies] +six = "*" + @@ -36,0 +48,37 @@ trio = ["trio (>=0.16)"] +[[package]] +name = "apache-beam" +version = "2.31.0" +description = "Apache Beam SDK for Python" +category = "main" +optional = false +python-versions = ">=3.6" + +[package.dependencies] +avro-python3 = ">=1.8.1,<1.9.2 || >1.9.2,<1.10.0" +crcmod = ">=1.7,<2.0" +dill = ">=0.3.1.1,<0.3.2" +fastavro = ">=0.21.4,<2" +future = ">=0.18.2,<1.0.0" +grpcio = ">=1.29.0,<2" +hdfs = ">=2.1.0,<3.0.0" +httplib2 = ">=0.8,<0.20.0" +numpy = ">=1.14.3,<1.21.0" +oauth2client = ">=2.0.1,<5" +protobuf = ">=3.12.2,<4" +pyarrow = ">=0.15.1,<5.0.0" +pydot = ">=1.2.0,<2" +pymongo = ">=3.8.0,<4.0.0" +python-dateutil = ">=2.8.0,<3" +pytz = ">=2018.3" +requests = ">=2.24.0,<3.0.0" +typing-extensions = ">=3.7.0,<3.8.0" + +[package.extras] +aws = ["boto3 (>=1.9)"] +azure = ["azure-storage-blob (>=12.3.2)", "azure-core (>=1.7.0)"] +docs = ["Sphinx (>=1.5.2,<2.0)"] +gcp = ["cachetools (>=3.1.0,<5)", "google-apitools (>=0.5.31,<0.5.32)", "google-auth (>=1.18.0,<2)", "google-cloud-datastore (>=1.7.1,<2)", "google-cloud-pubsub (>=0.39.0,<2)", "google-cloud-bigquery (>=1.6.0,<3)", "google-cloud-core (>=0.28.1,<2)", "google-cloud-bigtable (>=0.31.1,<2)", "google-cloud-spanner (>=1.13.0,<2)", "grpcio-gcp (>=0.2.2,<1)", "google-cloud-dlp (>=0.12.0,<2)", "google-cloud-language (>=1.3.0,<2)", "google-cloud-videointelligence (>=1.8.0,<2)", "google-cloud-vision (>=0.38.0,<2)", "google-cloud-profiler (>=3.0.4,<4)"] +interactive = ["facets-overview (>=1.0.0,<2)", "ipython (>=5.8.0,<8)", "ipykernel (>=5.2.0,<6)", "jupyter-client (>=6.1.11,<6.1.13)", "timeloop (>=1.0.2,<2)"] +interactive_test = ["nbformat (>=5.0.5,<6)", "nbconvert (>=5.6.1,<6)", "selenium (>=3.141.0,<4)", "needle (>=0.5.0,<1)", "chromedriver-binary (>=88,<89)", "pillow (>=7.1.1,<8)"] +test = ["freezegun (>=0.3.12)", "mock (>=1.0.1,<3.0.0)", "nose (>=1.3.7)", "nose-xunitmp (>=0.4.1)", "pandas (>=1.0,<1.3.0)", "parameterized (>=0.7.1,<0.8.0)", "pyhamcrest (>=1.9,!=1.10.0,<2.0.0)", "pyyaml (>=3.12,<6.0.0)", "requests-mock (>=1.7,<2.0)", "tenacity (>=5.0.2,<6.0)", "pytest (>=4.4.0,<5.0)", "pytest-xdist (>=1.29.0,<2)", "pytest-timeout (>=1.3.3,<2)", "sqlalchemy (>=1.3,<2.0)", "psycopg2-binary (>=2.8.5,<3.0.0)", "testcontainers (>=3.0.3,<4.0.0)"] + @@ -63,0 +112,11 @@ tests = ["pytest", "pytest-asyncio", "mypy (>=0.800)"] +[[package]] +name = "astunparse" +version = "1.6.3" +description = "An AST unparser for Python" +category = "main" +optional = false +python-versions = "*" + +[package.dependencies] +six = ">=1.6.1,<2.0" + @@ -93,0 +153,27 @@ tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (> +[[package]] +name = "avro-python3" +version = "1.9.2.1" +description = "Avro is a serialization and RPC framework." +category = "main" +optional = false +python-versions = ">=3.5" + +[package.extras] +snappy = ["python-snappy"] +zstandard = ["zstandard"] + +[[package]] +name = "bcj-cffi" +version = "0.5.1" +description = "bcj algorithm library" +category = "main" +optional = false +python-versions = "*" + +[package.dependencies] +cffi = ">=1.14.0" + +[package.extras] +check = ["mypy", "check-manifest", "flake8", "readme-renderer", "pygments", "isort", "twine"] +test = ["pytest", "pytest-cov", "coverage[toml] (>=5.2)"] + @@ -115,0 +202,35 @@ uvloop = ["uvloop (>=0.15.2)"] +[[package]] +name = "brotli" +version = "1.0.9" +description = "Python bindings for the Brotli compression library" +category = "main" +optional = false +python-versions = "*" + +[[package]] +name = "brotlicffi" +version = "1.0.9.2" +description = "Python CFFI bindings to the Brotli library" +category = "main" +optional = false +python-versions = "*" + +[package.dependencies] +cffi = ">=1.0.0" + +[[package]] +name = "cachetools" +version = "4.2.2" +description = "Extensible memoizing collections and decorators" +category = "main" +optional = false +python-versions = "~=3.5" + +[[package]] +name = "cbor" +version = "1.0.0" +description = "RFC 7049 - Concise Binary Object Representation" +category = "main" +optional = false +python-versions = "*" + @@ -123,0 +245,11 @@ python-versions = "*" +[[package]] +name = "cffi" +version = "1.14.6" +description = "Foreign Function Interface for Python calling C code." +category = "main" +optional = false +python-versions = "*" + +[package.dependencies] +pycparser = "*" + @@ -161,0 +294,16 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" +[[package]] +name = "conllu" +version = "4.4" +description = "CoNLL-U Parser parses a CoNLL-U formatted string into a nested python dictionary" +category = "main" +optional = false +python-versions = "*" + +[[package]] +name = "crcmod" +version = "1.7" +description = "CRC Generator" +category = "main" +optional = false +python-versions = "*" + @@ -187 +335 @@ benchmarks = ["numpy (==1.18.5)", "tensorflow (==2.3.0)", "torch (==1.6.0)", "tr -dev = ["absl-py", "pytest", "pytest-xdist", "aiohttp", "apache-beam (>=2.26.0)", "elasticsearch", "aiobotocore (==1.2.2)", "boto3 (==1.16.43)", "botocore (==1.19.52)", "faiss-cpu", "fsspec", "moto[s3,server] (==2.0.4)", "rarfile (>=4.0)", "s3fs", "tensorflow (>=2.3)", "torch", "transformers", "bs4", "conllu", "langdetect", "lxml", "mwparserfromhell", "nltk", "openpyxl", "py7zr", "tldextract", "zstandard", "bert-score (>=0.3.6)", "rouge-score", "sacrebleu", "scipy", "seqeval", "scikit-learn", "jiwer", "sentencepiece", "toml (>=0.10.1)", "requests-file (>=1.5.1)", "tldextract (>=3.1.0)", "texttable (>=1.6.3)", "Werkzeug (>=1.0.1)", "six (>=1.15.0,<1.16.0)", "wget (>=3.2)", "pytorch-nlp (==0.5.0)", "pytorch-lightning", "fastBPE (==0.1.0)", "fairseq", "black (==21.4b0)", "flake8 (==3.7.9)", "isort", "pyyaml (>=5.3.1)", "importlib-resources"] +dev = ["absl-py", "pytest", "pytest-xdist", "aiohttp", "apache-beam (>=2.26.0)", "elasticsearch", "aiobotocore (==1.2.2)", "boto3 (==1.16.43)", "botocore (==1.19.52)", "faiss-cpu", "fsspec", "moto[server,s3] (==2.0.4)", "rarfile (>=4.0)", "s3fs", "tensorflow (>=2.3)", "torch", "transformers", "bs4", "conllu", "langdetect", "lxml", "mwparserfromhell", "nltk", "openpyxl", "py7zr", "tldextract", "zstandard", "bert-score (>=0.3.6)", "rouge-score", "sacrebleu", "scipy", "seqeval", "scikit-learn", "jiwer", "sentencepiece", "toml (>=0.10.1)", "requests-file (>=1.5.1)", "tldextract (>=3.1.0)", "texttable (>=1.6.3)", "Werkzeug (>=1.0.1)", "six (>=1.15.0,<1.16.0)", "wget (>=3.2)", "pytorch-nlp (==0.5.0)", "pytorch-lightning", "fastBPE (==0.1.0)", "fairseq", "black (==21.4b0)", "flake8 (==3.7.9)", "isort", "pyyaml (>=5.3.1)", "importlib-resources"] @@ -194 +342 @@ tensorflow_gpu = ["tensorflow-gpu (>=2.2.0)"] -tests = ["absl-py", "pytest", "pytest-xdist", "aiohttp", "apache-beam (>=2.26.0)", "elasticsearch", "aiobotocore (==1.2.2)", "boto3 (==1.16.43)", "botocore (==1.19.52)", "faiss-cpu", "fsspec", "moto[s3,server] (==2.0.4)", "rarfile (>=4.0)", "s3fs", "tensorflow (>=2.3)", "torch", "transformers", "bs4", "conllu", "langdetect", "lxml", "mwparserfromhell", "nltk", "openpyxl", "py7zr", "tldextract", "zstandard", "bert-score (>=0.3.6)", "rouge-score", "sacrebleu", "scipy", "seqeval", "scikit-learn", "jiwer", "sentencepiece", "toml (>=0.10.1)", "requests-file (>=1.5.1)", "tldextract (>=3.1.0)", "texttable (>=1.6.3)", "Werkzeug (>=1.0.1)", "six (>=1.15.0,<1.16.0)", "wget (>=3.2)", "pytorch-nlp (==0.5.0)", "pytorch-lightning", "fastBPE (==0.1.0)", "fairseq", "importlib-resources"] +tests = ["absl-py", "pytest", "pytest-xdist", "aiohttp", "apache-beam (>=2.26.0)", "elasticsearch", "aiobotocore (==1.2.2)", "boto3 (==1.16.43)", "botocore (==1.19.52)", "faiss-cpu", "fsspec", "moto[server,s3] (==2.0.4)", "rarfile (>=4.0)", "s3fs", "tensorflow (>=2.3)", "torch", "transformers", "bs4", "conllu", "langdetect", "lxml", "mwparserfromhell", "nltk", "openpyxl", "py7zr", "tldextract", "zstandard", "bert-score (>=0.3.6)", "rouge-score", "sacrebleu", "scipy", "seqeval", "scikit-learn", "jiwer", "sentencepiece", "toml (>=0.10.1)", "requests-file (>=1.5.1)", "tldextract (>=3.1.0)", "texttable (>=1.6.3)", "Werkzeug (>=1.0.1)", "six (>=1.15.0,<1.16.0)", "wget (>=3.2)", "pytorch-nlp (==0.5.0)", "pytorch-lightning", "fastBPE (==0.1.0)", "fairseq", "importlib-resources"] @@ -199 +347 @@ name = "dill" -version = "0.3.4" +version = "0.3.1.1" @@ -203 +351 @@ optional = false -python-versions = ">=2.7, !=3.0.*" +python-versions = ">=2.6, !=3.0.*" @@ -207,0 +356,30 @@ graph = ["objgraph (>=1.7.2)"] +[[package]] +name = "docopt" +version = "0.6.2" +description = "Pythonic argument parser, that will make you smile" +category = "main" +optional = false +python-versions = "*" + +[[package]] +name = "et-xmlfile" +version = "1.1.0" +description = "An implementation of lxml.xmlfile for the standard library" +category = "main" +optional = false +python-versions = ">=3.6" + +[[package]] +name = "fastavro" +version = "1.4.4" +description = "Fast read/write of AVRO files" +category = "main" +optional = false +python-versions = ">=3.6" + +[package.extras] +codecs = ["python-snappy", "zstandard", "lz4"] +lz4 = ["lz4"] +snappy = ["python-snappy"] +zstandard = ["zstandard"] + @@ -215,0 +394,8 @@ python-versions = "*" +[[package]] +name = "flatbuffers" +version = "1.12" +description = "The FlatBuffers serialization format for Python" +category = "main" +optional = false +python-versions = "*" + @@ -240,0 +427,75 @@ ssh = ["paramiko"] +[[package]] +name = "future" +version = "0.18.2" +description = "Clean single-source support for Python 3 and 2" +category = "main" +optional = false +python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*" + +[[package]] +name = "gast" +version = "0.4.0" +description = "Python AST that abstracts the underlying Python version" +category = "main" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" + +[[package]] +name = "google-auth" +version = "1.34.0" +description = "Google Authentication Library" +category = "main" +optional = false +python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*" + +[package.dependencies] +cachetools = ">=2.0.0,<5.0" +pyasn1-modules = ">=0.2.1" +rsa = {version = ">=3.1.4,<5", markers = "python_version >= \"3.6\""} +six = ">=1.9.0" + +[package.extras] +aiohttp = ["requests (>=2.20.0,<3.0.0dev)", "aiohttp (>=3.6.2,<4.0.0dev)"] +pyopenssl = ["pyopenssl (>=20.0.0)"] +reauth = ["pyu2f (>=0.1.5)"] + +[[package]] +name = "google-auth-oauthlib" +version = "0.4.4" +description = "Google Authentication Library" +category = "main" +optional = false +python-versions = ">=3.6" + +[package.dependencies] +google-auth = ">=1.0.0" +requests-oauthlib = ">=0.7.0" + +[package.extras] +tool = ["click (>=6.0.0)"] + +[[package]] +name = "google-pasta" +version = "0.2.0" +description = "pasta is an AST-based Python refactoring library" +category = "main" +optional = false +python-versions = "*" + +[package.dependencies] +six = "*" + +[[package]] +name = "grpcio" +version = "1.34.1" +description = "HTTP/2-based RPC framework" +category = "main" +optional = false +python-versions = "*" + +[package.dependencies] +six = ">=1.5.2" + +[package.extras] +protobuf = ["grpcio-tools (>=1.34.1)"] + @@ -248,0 +510,43 @@ python-versions = ">=3.6" +[[package]] +name = "h5py" +version = "3.1.0" +description = "Read and write HDF5 files from Python" +category = "main" +optional = false +python-versions = ">=3.6" + +[package.dependencies] +numpy = [ + {version = ">=1.17.5", markers = "python_version == \"3.8\""}, + {version = ">=1.19.3", markers = "python_version >= \"3.9\""}, +] + +[[package]] +name = "hdfs" +version = "2.6.0" +description = "HdfsCLI: API and command line interface for HDFS." +category = "main" +optional = false +python-versions = "*" + +[package.dependencies] +docopt = "*" +requests = ">=2.7.0" +six = ">=1.9.0" + +[package.extras] +avro = ["fastavro (>=0.21.19)"] +dataframe = ["fastavro (>=0.21.19)", "pandas (>=0.14.1)"] +kerberos = ["requests-kerberos (>=0.7.0)"] + +[[package]] +name = "httplib2" +version = "0.19.1" +description = "A comprehensive HTTP client library." +category = "main" +optional = false +python-versions = "*" + +[package.dependencies] +pyparsing = ">=2.4.2,<3" + @@ -251 +555 @@ name = "huggingface-hub" -version = "0.0.14" +version = "0.0.12" @@ -286,0 +591,98 @@ python-versions = "*" +[[package]] +name = "joblib" +version = "1.0.1" +description = "Lightweight pipelining with Python functions" +category = "main" +optional = false +python-versions = ">=3.6" + +[[package]] +name = "jsonlines" +version = "2.0.0" +description = "Library with helpers for the jsonlines file format" +category = "main" +optional = false +python-versions = ">=3.6" + +[[package]] +name = "kenlm" +version = "0.0.0" +description = "" +category = "main" +optional = false +python-versions = "*" + +[package.source] +type = "url" +url = "https://github.com/kpu/kenlm/archive/master.zip" +[[package]] +name = "keras-nightly" +version = "2.5.0.dev2021032900" +description = "TensorFlow Keras." +category = "main" +optional = false +python-versions = "*" + +[[package]] +name = "keras-preprocessing" +version = "1.1.2" +description = "Easy data preprocessing and data augmentation for deep learning models" +category = "main" +optional = false +python-versions = "*" + +[package.dependencies] +numpy = ">=1.9.1" +six = ">=1.9.0" + +[package.extras] +image = ["scipy (>=0.14)", "Pillow (>=5.2.0)"] +pep8 = ["flake8"] +tests = ["pandas", "pillow", "tensorflow", "keras", "pytest", "pytest-xdist", "pytest-cov"] + +[[package]] +name = "kss" +version = "2.5.1" +description = "Split Korean text into sentences using heuristic algorithm using pure python" +category = "main" +optional = false +python-versions = ">=3" + +[[package]] +name = "lm-dataformat" +version = "0.0.19" +description = "A utility for storing and reading files for LM training." +category = "main" +optional = false +python-versions = ">=3.6" + +[package.dependencies] +jsonlines = "*" +ujson = "*" +zstandard = "*" + +[[package]] +name = "lxml" +version = "4.6.3" +description = "Powerful and Pythonic XML processing library combining libxml2/libxslt with the ElementTree API." +category = "main" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, != 3.4.*" + +[package.extras] +cssselect = ["cssselect (>=0.7)"] +html5 = ["html5lib"] +htmlsoup = ["beautifulsoup4"] +source = ["Cython (>=0.29.7)"] + +[[package]] +name = "markdown" +version = "3.3.4" +description = "Python implementation of Markdown." +category = "main" +optional = false +python-versions = ">=3.6" + +[package.extras] +testing = ["coverage", "pyyaml"] + @@ -297 +699 @@ name = "multiprocess" -version = "0.70.12.2" +version = "0.70.9" @@ -304 +706,14 @@ python-versions = "*" -dill = ">=0.3.4" +dill = ">=0.3.1" + +[[package]] +name = "multivolumefile" +version = "0.2.3" +description = "multi volume file wrapper library" +category = "main" +optional = false +python-versions = ">=3.6" + +[package.extras] +check = ["check-manifest", "flake8", "flake8-black", "readme-renderer", "pygments", "isort (>=5.0.3)", "twine"] +test = ["pytest", "pytest-cov", "pyannotate", "coverage[toml] (>=5.2)", "coveralls (>=2.1.1)", "hypothesis"] +type = ["mypy", "mypy-extensions"] @@ -313,0 +729,28 @@ python-versions = "*" +[[package]] +name = "nlp" +version = "0.4.0" +description = "HuggingFace/NLP is an open library of NLP datasets." +category = "main" +optional = false +python-versions = "*" + +[package.dependencies] +dill = "*" +filelock = "*" +numpy = "*" +pandas = "*" +pyarrow = ">=0.16.0" +requests = ">=2.19.0" +tqdm = ">=4.27" +xxhash = "*" + +[package.extras] +apache-beam = ["apache-beam"] +dev = ["apache-beam", "absl-py", "bs4", "elasticsearch", "faiss-cpu", "langdetect", "mwparserfromhell", "nltk", "pytest", "pytest-xdist", "tensorflow", "torch", "tldextract", "zstandard", "black", "isort", "flake8 (==3.7.9)"] +docs = ["recommonmark", "sphinx", "sphinx-markdown-tables", "sphinx-rtd-theme (==0.4.3)", "sphinx-copybutton"] +quality = ["black", "isort", "flake8 (==3.7.9)"] +tensorflow = ["tensorflow (>=2.2.0)"] +tensorflow_gpu = ["tensorflow-gpu (>=2.2.0)"] +tests = ["apache-beam", "absl-py", "bs4", "elasticsearch", "faiss-cpu", "langdetect", "mwparserfromhell", "nltk", "pytest", "pytest-xdist", "tensorflow", "torch", "tldextract", "zstandard"] +torch = ["torch"] + @@ -316 +759 @@ name = "numpy" -version = "1.21.1" +version = "1.19.5" @@ -320 +763,55 @@ optional = false -python-versions = ">=3.7" +python-versions = ">=3.6" + +[[package]] +name = "oauth2client" +version = "4.1.3" +description = "OAuth 2.0 client library" +category = "main" +optional = false +python-versions = "*" + +[package.dependencies] +httplib2 = ">=0.9.1" +pyasn1 = ">=0.1.7" +pyasn1-modules = ">=0.0.5" +rsa = ">=3.1.4" +six = ">=1.6.1" + +[[package]] +name = "oauthlib" +version = "3.1.1" +description = "A generic, spec-compliant, thorough implementation of the OAuth request-signing logic" +category = "main" +optional = false +python-versions = ">=3.6" + +[package.extras] +rsa = ["cryptography (>=3.0.0,<4)"] +signals = ["blinker (>=1.4.0)"] +signedtoken = ["cryptography (>=3.0.0,<4)", "pyjwt (>=2.0.0,<3)"] + +[[package]] +name = "openpyxl" +version = "3.0.7" +description = "A Python library to read/write Excel 2010 xlsx/xlsm files" +category = "main" +optional = false +python-versions = ">=3.6," + +[package.dependencies] +et-xmlfile = "*" + +[[package]] +name = "opt-einsum" +version = "3.3.0" +description = "Optimizing numpys einsum function" +category = "main" +optional = false +python-versions = ">=3.5" + +[package.dependencies] +numpy = ">=1.7" + +[package.extras] +docs = ["sphinx (==1.2.3)", "sphinxcontrib-napoleon", "sphinx-rtd-theme", "numpydoc"] +tests = ["pytest", "pytest-cov", "pytest-pep8"] @@ -331 +828,98 @@ python-versions = ">=3.6" -pyparsing = ">=2.0.2" +pyparsing = ">=2.0.2" + +[[package]] +name = "pandas" +version = "1.3.1" +description = "Powerful data structures for data analysis, time series, and statistics" +category = "main" +optional = false +python-versions = ">=3.7.1" + +[package.dependencies] +numpy = ">=1.17.3" +python-dateutil = ">=2.7.3" +pytz = ">=2017.3" + +[package.extras] +test = ["hypothesis (>=3.58)", "pytest (>=6.0)", "pytest-xdist"] + +[[package]] +name = "pathspec" +version = "0.9.0" +description = "Utility library for gitignore style pattern matching of file paths." +category = "dev" +optional = false +python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7" + +[[package]] +name = "pillow" +version = "8.3.1" +description = "Python Imaging Library (Fork)" +category = "main" +optional = false +python-versions = ">=3.6" + +[[package]] +name = "pluggy" +version = "0.13.1" +description = "plugin and hook calling mechanisms for python" +category = "dev" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" + +[package.extras] +dev = ["pre-commit", "tox"] + +[[package]] +name = "protobuf" +version = "3.17.3" +description = "Protocol Buffers" +category = "main" +optional = false +python-versions = "*" + +[package.dependencies] +six = ">=1.9" + +[[package]] +name = "py" +version = "1.10.0" +description = "library with cross-python path, ini-parsing, io, code, log facilities" +category = "dev" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" + +[[package]] +name = "py7zr" +version = "0.16.1" +description = "Pure python 7-zip library" +category = "main" +optional = false +python-versions = ">=3.6" + +[package.dependencies] +bcj-cffi = ">=0.5.1,<0.6.0" +brotli = {version = ">=1.0.9", markers = "platform_python_implementation == \"CPython\""} +brotlicffi = {version = ">=1.0.9.2", markers = "platform_python_implementation == \"PyPy\""} +multivolumefile = ">=0.2.3" +pycryptodomex = ">=3.6.6" +pyppmd = ">=0.14.0" +pyzstd = ">=0.14.4,<0.15.0" +texttable = "*" + +[package.extras] +check = ["mypy (>=0.812)", "mypy-extensions (>=0.4.1)", "check-manifest", "flake8", "flake8-black", "flake8-deprecated", "isort (>=5.0.3)", "pygments", "readme-renderer", "twine"] +docs = ["sphinx (>=2.3)", "sphinx-py3doc-enhanced-theme", "sphinx-a4doc", "docutils"] +test = ["pytest", "pytest-benchmark", "pytest-cov", "pytest-timeout", "pytest-remotedata", "pytest-profiling", "pyannotate", "py-cpuinfo", "coverage[toml] (>=5.2)", "coveralls (>=2.1.1)"] +test_compat = ["libarchive-c"] + +[[package]] +name = "pyarrow" +version = "4.0.1" +description = "Python library for Apache Arrow" +category = "main" +optional = false +python-versions = ">=3.6" + +[package.dependencies] +numpy = ">=1.16.6" @@ -334,3 +928,3 @@ pyparsing = ">=2.0.2" -name = "pandas" -version = "1.3.1" -description = "Powerful data structures for data analysis, time series, and statistics" +name = "pyasn1" +version = "0.4.8" +description = "ASN.1 types and codecs" @@ -339,9 +933 @@ optional = false -python-versions = ">=3.7.1" - -[package.dependencies] -numpy = ">=1.17.3" -python-dateutil = ">=2.7.3" -pytz = ">=2017.3" - -[package.extras] -test = ["hypothesis (>=3.58)", "pytest (>=6.0)", "pytest-xdist"] +python-versions = "*" @@ -350,4 +936,4 @@ test = ["hypothesis (>=3.58)", "pytest (>=6.0)", "pytest-xdist"] -name = "pathspec" -version = "0.9.0" -description = "Utility library for gitignore style pattern matching of file paths." -category = "dev" +name = "pyasn1-modules" +version = "0.2.8" +description = "A collection of ASN.1-based protocols modules." +category = "main" @@ -355 +941,4 @@ optional = false -python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7" +python-versions = "*" + +[package.dependencies] +pyasn1 = ">=0.4.6,<0.5.0" @@ -358,4 +947,4 @@ python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7" -name = "pluggy" -version = "0.13.1" -description = "plugin and hook calling mechanisms for python" -category = "dev" +name = "pycparser" +version = "2.20" +description = "C parser in Python" +category = "main" @@ -365,2 +954,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" -[package.extras] -dev = ["pre-commit", "tox"] +[[package]] +name = "pycryptodomex" +version = "3.10.1" +description = "Cryptographic library for Python" +category = "main" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" @@ -369,4 +963,4 @@ dev = ["pre-commit", "tox"] -name = "py" -version = "1.10.0" -description = "library with cross-python path, ini-parsing, io, code, log facilities" -category = "dev" +name = "pydot" +version = "1.4.2" +description = "Python interface to Graphviz's Dot" +category = "main" @@ -375,0 +970,3 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +[package.dependencies] +pyparsing = ">=2.1.4" + @@ -377,3 +974,3 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" -name = "pyarrow" -version = "4.0.1" -description = "Python library for Apache Arrow" +name = "pymongo" +version = "3.12.0" +description = "Python driver for MongoDB <http://www.mongodb.org>" @@ -382 +979 @@ optional = false -python-versions = ">=3.6" +python-versions = "*" @@ -384,2 +981,9 @@ python-versions = ">=3.6" -[package.dependencies] -numpy = ">=1.16.6" +[package.extras] +aws = ["pymongo-auth-aws (<2.0.0)"] +encryption = ["pymongocrypt (>=1.1.0,<2.0.0)"] +gssapi = ["pykerberos"] +ocsp = ["pyopenssl (>=17.2.0)", "requests (<3.0.0)", "service-identity (>=18.1.0)", "certifi"] +snappy = ["python-snappy"] +srv = ["dnspython (>=1.16.0,<1.17.0)"] +tls = ["ipaddress"] +zstd = ["zstandard"] @@ -394,0 +999,14 @@ python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*" +[[package]] +name = "pyppmd" +version = "0.15.2" +description = "PPMd compression/decompression library" +category = "main" +optional = false +python-versions = ">=3.6" + +[package.extras] +check = ["mypy (>=0.812)", "mypy-extensions (>=0.4.3)", "check-manifest", "flake8", "flake8-black", "readme-renderer", "pygments", "isort (>=5.0.3)"] +docs = ["sphinx (>=2.3)", "sphinx-rtd-theme"] +fuzzer = ["atheris", "hypothesis"] +test = ["pytest", "pytest-benchmark", "pytest-cov", "psutil", "hypothesis", "coverage[toml] (>=5.2)"] + @@ -439 +1057 @@ description = "YAML parser and emitter for Python" -category = "dev" +category = "main" @@ -442,0 +1061,8 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*" +[[package]] +name = "pyzstd" +version = "0.14.4" +description = "Python bindings to Zstandard (zstd) compression library, the API is similar to Python's bz2/lzma/zlib module." +category = "main" +optional = false +python-versions = ">=3.5" + @@ -447 +1073 @@ description = "Alternative regular expression module, to replace re." -category = "dev" +category = "main" @@ -468,0 +1095,41 @@ use_chardet_on_py3 = ["chardet (>=3.0.2,<5)"] +[[package]] +name = "requests-oauthlib" +version = "1.3.0" +description = "OAuthlib authentication support for Requests." +category = "main" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" + +[package.dependencies] +oauthlib = ">=3.0.0" +requests = ">=2.0.0" + +[package.extras] +rsa = ["oauthlib[signedtoken] (>=3.0.0)"] + +[[package]] +name = "rsa" +version = "4.7.2" +description = "Pure-Python RSA implementation" +category = "main" +optional = false +python-versions = ">=3.5, <4" + +[package.dependencies] +pyasn1 = ">=0.1.3" + +[[package]] +name = "sacremoses" +version = "0.0.45" +description = "SacreMoses" +category = "main" +optional = false +python-versions = "*" + +[package.dependencies] +click = "*" +joblib = "*" +regex = "*" +six = "*" +tqdm = "*" + @@ -471 +1138 @@ name = "six" -version = "1.16.0" +version = "1.15.0" @@ -498,0 +1166,100 @@ full = ["itsdangerous", "jinja2", "python-multipart", "pyyaml", "requests", "gra +[[package]] +name = "tensorboard" +version = "2.5.0" +description = "TensorBoard lets you watch Tensors Flow" +category = "main" +optional = false +python-versions = ">= 2.7, != 3.0.*, != 3.1.*" + +[package.dependencies] +absl-py = ">=0.4" +google-auth = ">=1.6.3,<2" +google-auth-oauthlib = ">=0.4.1,<0.5" +grpcio = ">=1.24.3" +markdown = ">=2.6.8" +numpy = ">=1.12.0" +protobuf = ">=3.6.0" +requests = ">=2.21.0,<3" +tensorboard-data-server = ">=0.6.0,<0.7.0" +tensorboard-plugin-wit = ">=1.6.0" +werkzeug = ">=0.11.15" + +[[package]] +name = "tensorboard-data-server" +version = "0.6.1" +description = "Fast data loading for TensorBoard" +category = "main" +optional = false +python-versions = ">=3.6" + +[[package]] +name = "tensorboard-plugin-wit" +version = "1.8.0" +description = "What-If Tool TensorBoard plugin." +category = "main" +optional = false +python-versions = "*" + +[[package]] +name = "tensorflow" +version = "2.5.0" +description = "TensorFlow is an open source machine learning framework for everyone." +category = "main" +optional = false +python-versions = "*" + +[package.dependencies] +absl-py = ">=0.10,<1.0" +astunparse = ">=1.6.3,<1.7.0" +flatbuffers = ">=1.12.0,<1.13.0" +gast = "0.4.0" +google-pasta = ">=0.2,<1.0" +grpcio = ">=1.34.0,<1.35.0" +h5py = ">=3.1.0,<3.2.0" +keras-nightly = ">=2.5.0.dev,<2.6.0" +keras-preprocessing = ">=1.1.2,<1.2.0" +numpy = ">=1.19.2,<1.20.0" +opt-einsum = ">=3.3.0,<3.4.0" +protobuf = ">=3.9.2" +six = ">=1.15.0,<1.16.0" +tensorboard = ">=2.5,<3.0" +tensorflow-estimator = ">=2.5.0rc0,<2.6.0" +termcolor = ">=1.1.0,<1.2.0" +typing-extensions = ">=3.7.4,<3.8.0" +wrapt = ">=1.12.1,<1.13.0" + +[[package]] +name = "tensorflow-estimator" +version = "2.5.0" +description = "TensorFlow Estimator." +category = "main" +optional = false +python-versions = "*" + +[[package]] +name = "termcolor" +version = "1.1.0" +description = "ANSII Color formatting for output in terminal." +category = "main" +optional = false +python-versions = "*" + +[[package]] +name = "texttable" +version = "1.6.4" +description = "module for creating simple ASCII tables" +category = "main" +optional = false +python-versions = "*" + +[[package]] +name = "tokenizers" +version = "0.10.3" +description = "Fast and Customizable Tokenizers" +category = "main" +optional = false +python-versions = "*" + +[package.extras] +testing = ["pytest"] + @@ -530,0 +1298,69 @@ telegram = ["requests"] +[[package]] +name = "transformers" +version = "4.9.1" +description = "State-of-the-art Natural Language Processing for TensorFlow 2.0 and PyTorch" +category = "main" +optional = false +python-versions = ">=3.6.0" + +[package.dependencies] +filelock = "*" +huggingface-hub = "0.0.12" +numpy = ">=1.17" +packaging = "*" +pyyaml = ">=5.1" +regex = "!=2019.12.17" +requests = "*" +sacremoses = "*" +tokenizers = ">=0.10.1,<0.11" +tqdm = ">=4.27" + +[package.extras] +all = ["tensorflow (>=2.3)", "onnxconverter-common", "keras2onnx", "torch (>=1.0)", "jax (>=0.2.8)", "jaxlib (>=0.1.65)", "flax (>=0.3.4)", "optax (>=0.0.8)", "sentencepiece (==0.1.91)", "protobuf", "tokenizers (>=0.10.1,<0.11)", "soundfile", "torchaudio", "pillow", "optuna", "ray", "timm", "codecarbon (==1.2.0)"] +codecarbon = ["codecarbon (==1.2.0)"] +deepspeed = ["deepspeed (>=0.4.3)"] +dev = ["tensorflow (>=2.3)", "onnxconverter-common", "keras2onnx", "torch (>=1.0)", "jax (>=0.2.8)", "jaxlib (>=0.1.65)", "flax (>=0.3.4)", "optax (>=0.0.8)", "sentencepiece (==0.1.91)", "protobuf", "tokenizers (>=0.10.1,<0.11)", "soundfile", "torchaudio", "pillow", "optuna", "ray", "timm", "codecarbon (==1.2.0)", "pytest", "pytest-xdist", "timeout-decorator", "parameterized", "psutil", "datasets", "pytest-timeout", "black (==21.4b0)", "sacrebleu (>=1.4.12)", "rouge-score", "nltk", "gitpython", "faiss-cpu", "cookiecutter (==1.7.2)", "isort (>=5.5.4)", "flake8 (>=3.8.3)", "fugashi (>=1.0)", "ipadic (>=1.0.0,<2.0)", "unidic-lite (>=1.0.7)", "unidic (>=1.0.2)", "docutils (==0.16.0)", "recommonmark", "sphinx (==3.2.1)", "sphinx-markdown-tables", "sphinx-rtd-theme (==0.4.3)", "sphinx-copybutton", "sphinxext-opengraph (==0.4.1)", "scikit-learn"] +docs = ["tensorflow (>=2.3)", "onnxconverter-common", "keras2onnx", "torch (>=1.0)", "jax (>=0.2.8)", "jaxlib (>=0.1.65)", "flax (>=0.3.4)", "optax (>=0.0.8)", "sentencepiece (==0.1.91)", "protobuf", "tokenizers (>=0.10.1,<0.11)", "soundfile", "torchaudio", "pillow", "optuna", "ray", "timm", "codecarbon (==1.2.0)", "docutils (==0.16.0)", "recommonmark", "sphinx (==3.2.1)", "sphinx-markdown-tables", "sphinx-rtd-theme (==0.4.3)", "sphinx-copybutton", "sphinxext-opengraph (==0.4.1)"] +docs_specific = ["docutils (==0.16.0)", "recommonmark", "sphinx (==3.2.1)", "sphinx-markdown-tables", "sphinx-rtd-theme (==0.4.3)", "sphinx-copybutton", "sphinxext-opengraph (==0.4.1)"] +fairscale = ["fairscale (>0.3)"] +flax = ["jax (>=0.2.8)", 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{url = "https://github.com/kpu/kenlm/archive/master.zip"} diff --git a/vendors/trec-car-tools/.gitignore b/vendors/trec-car-tools/.gitignore new file mode 100644 index 00000000..aad927c9 --- /dev/null +++ b/vendors/trec-car-tools/.gitignore @@ -0,0 +1,31 @@ +# Maven template +target/ +pom.xml.tag +pom.xml.releaseBackup +pom.xml.versionsBackup +pom.xml.next +release.properties +dependency-reduced-pom.xml +buildNumber.properties +.mvn/timing.properties + +# Distribution / packaging +.Python +env/ +build/ +develop-eggs/ +dist/ +downloads/ +eggs/ +.eggs/ +lib/ +lib64/ +parts/ +sdist/ +var/ +*.egg-info/ +.installed.cfg +*.egg + +# Sphinx documentation +python3/_build/ diff --git a/vendors/trec-car-tools/.travis.yml b/vendors/trec-car-tools/.travis.yml new file mode 100644 index 00000000..3db709ac --- /dev/null +++ b/vendors/trec-car-tools/.travis.yml @@ -0,0 +1,20 @@ +language: python +python: + - "3.5" +before_install: + - sudo apt-get -qq update + - sudo apt-get install -y maven +python: + - "3.6" + - "3.7" +install: + - pip install -r python3/requirements.txt +script: + - pip install python3/ + - pushd trec-car-tools-example; mvn install; popd + + - curl http://trec-car.cs.unh.edu/datareleases/v2.0/test200.v2.0.tar.xz | tar -xJ + - pages=test200/test200-train/train.pages.cbor outlines=test200/test200-train/train.pages.cbor-outlines.cbor paragraphs=test200/test200-train/train.pages.cbor-paragraphs.cbor bash .travis/test.sh + + - curl http://trec-car.cs.unh.edu/datareleases/v1.5/test200-v1.5.tar.xz | tar -xJ + - pages=test200/train.test200.cbor outlines=test200/train.test200.cbor paragraphs=test200/train.test200.cbor.paragraphs bash .travis/test.sh diff --git a/vendors/trec-car-tools/.travis/test.sh b/vendors/trec-car-tools/.travis/test.sh new file mode 100755 index 00000000..0aed3e4f --- /dev/null +++ b/vendors/trec-car-tools/.travis/test.sh @@ -0,0 +1,13 @@ +#!/bin/bash + +set -ex + +python3/test.py pages $pages >/dev/null +python3/test.py outlines $outlines >/dev/null +python3/test.py paragraphs $paragraphs >/dev/null + +cd trec-car-tools-example/ +mvn org.codehaus.mojo:exec-maven-plugin:1.5.0:java -Dexec.mainClass="edu.unh.cs.treccar_v2.read_data.ReadDataTest" -Dexec.args="header ../$pages" >/dev/null +mvn org.codehaus.mojo:exec-maven-plugin:1.5.0:java -Dexec.mainClass="edu.unh.cs.treccar_v2.read_data.ReadDataTest" -Dexec.args="pages ../$pages" >/dev/null +mvn org.codehaus.mojo:exec-maven-plugin:1.5.0:java -Dexec.mainClass="edu.unh.cs.treccar_v2.read_data.ReadDataTest" -Dexec.args="outlines ../$outlines" >/dev/null +mvn org.codehaus.mojo:exec-maven-plugin:1.5.0:java -Dexec.mainClass="edu.unh.cs.treccar_v2.read_data.ReadDataTest" -Dexec.args="paragraphs ../$paragraphs" >/dev/null diff --git a/vendors/trec-car-tools/LICENSE b/vendors/trec-car-tools/LICENSE new file mode 100644 index 00000000..bc025538 --- /dev/null +++ b/vendors/trec-car-tools/LICENSE @@ -0,0 +1,29 @@ +BSD 3-Clause License + +Copyright (c) 2017, Laura Dietz and Ben Gamari +All rights reserved. + +Redistribution and use in source and binary forms, with or without +modification, are permitted provided that the following conditions are met: + +* Redistributions of source code must retain the above copyright notice, this + list of conditions and the following disclaimer. + +* Redistributions in binary form must reproduce the above copyright notice, + this list of conditions and the following disclaimer in the documentation + and/or other materials provided with the distribution. + +* Neither the name of the copyright holder nor the names of its + contributors may be used to endorse or promote products derived from + this software without specific prior written permission. + +THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" +AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE +IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE +DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE +FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL +DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR +SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER +CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, +OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE +OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. diff --git a/vendors/trec-car-tools/README.mkd b/vendors/trec-car-tools/README.mkd new file mode 100644 index 00000000..cfdedf54 --- /dev/null +++ b/vendors/trec-car-tools/README.mkd @@ -0,0 +1,162 @@ +# TREC Car Tools + +[![Travis badge](https://travis-ci.org/TREMA-UNH/trec-car-tools.svg?branch=master)](https://travis-ci.org/TREMA-UNH/trec-car-tools) + +Development tools for participants of the TREC Complex Answer Retrieval track. + +Data release support for v1.5 and v2.0. + +Note that in order to allow to compile your project for two trec-car format versions, the maven artifact Id was changed to `treccar-tools-v2` with version 2.0, and the package path changed to `treccar_v2` + + +Current support for +- Python 3.6 +- Java 1.8 + +If you are using [Anaconda](https://www.anaconda.com/), install the `cbor` +library for Python 3.6: +``` +conda install -c laura-dietz cbor=1.0.0 +``` + +## How to use the Python bindings for trec-car-tools? + +1. Get the data from [http://trec-car.cs.unh.edu](http://trec-car.cs.unh.edu) +2. Clone this repository +3. `python setup.py install` + +Look out for test.py for an example on how to access the data. + + +## How to use the java 1.8 (or higher) bindings for trec-car-tools through maven? + +add to your project's pom.xml file (or similarly gradel or sbt): + +~~~~ + <repositories> + <repository> + <id>jitpack.io</id> + <url>https://jitpack.io</url> + </repository> + </repositories> +~~~~ + +add the trec-car-tools dependency: + +~~~~ + <dependency> + <groupId>com.github.TREMA-UNH</groupId> + <artifactId>trec-car-tools-java</artifactId> + <version>17</version> + </dependency> +~~~~ + +compile your project with `mvn compile` + + + + +## Tool support + +This package provides support for the following activities. + +- `read_data`: Reading the provided paragraph collection, outline collections, and training articles +- `format_runs`: writing submission files + + +## Reading Data + +If you use python or java, please use `trec-car-tools`, no need to understand the following. We provide bindings for haskell upon request. If you are programming under a different language, you can use any CBOR library and decode the grammar below. + +[CBOR](cbor.io) is similar to JSON, but it is a binary format that compresses better and avoids text file encoding issues. + +Articles, outlines, paragraphs are all described with CBOR following this grammar. Wikipedia-internal hyperlinks are preserved through `ParaLink`s. + + +~~~~~ + Page -> $pageName $pageId [PageSkeleton] PageType PageMetadata + PageType -> ArticlePage | CategoryPage | RedirectPage ParaLink | DisambiguationPage + PageMetadata -> RedirectNames DisambiguationNames DisambiguationIds CategoryNames CategoryIds InlinkIds InlinkAnchors + RedirectNames -> [$pageName] + DisambiguationNames -> [$pageName] + DisambiguationIds -> [$pageId] + CategoryNames -> [$pageName] + CategoryIds -> [$pageId] + InlinkIds -> [$pageId] + InlinkAnchors -> [$anchorText] + + PageSkeleton -> Section | Para | Image | ListItem + Section -> $sectionHeading [PageSkeleton] + Para -> Paragraph + Paragraph -> $paragraphId, [ParaBody] + ListItem -> $nestingLevel, Paragraph + Image -> $imageURL [PageSkeleton] + ParaBody -> ParaText | ParaLink + ParaText -> $text + ParaLink -> $targetPage $targetPageId $linkSection $anchorText +~~~~~ + +You can use any CBOR serialization library. Below a convenience library for reading the data into Python (3.5) + +- `./read_data/trec_car_read_data.py` +Python 3.5 convenience library for reading the input data (in CBOR format). +-- If you use anaconda, please install the cbor library with `conda install -c auto cbor=1.0` +-- Otherwise install it with `pypi install cbor` + +## Ranking Results + +Given an outline, your task is to produce one ranking for each section $section (representing an information need in traditional IR evaluations). + +Each ranked element is an (entity,passage) pair, meaning that this passage is relevant for the section, because it features a relevant entity. "Relevant" means that the entity or passage must/should/could be listed in this section. + +The section is represented by the path of headings in the outline `$pageTitle/$heading1/$heading1.1/.../$section` in URL encoding. + +The entity is represented by the DBpedia entity id (derived from the Wikipedia URL). Optionally, the entity can be omitted. + +The passage is represented by the passage id given in the passage corpus (an MD5 hash of the content). Optionally, the passage can be omitted. + + +The results are provided in a format that is similar to the "trec\_results file format" of [trec_eval](http://trec.nist.gov/trec_eval). More info on how to use [trec_eval](http://stackoverflow.com/questions/4275825/how-to-evaluate-a-search-retrieval-engine-using-trec-eval) and [source](https://github.com/usnistgov/trec_eval). + +Example of ranking format +~~~~~ + Green\_sea\_turtle\Habitat Pelagic\_zone 12345 0 27409 myTeam + $qid $entity $passageId rank sim run_id +~~~~~ + + + +## Integration with other tools + +It is recommended to use the `format_runs` package to write run files. Here an example: + + + with open('runfile', mode='w', encoding='UTF-8') as f: + writer = configure_csv_writer(f) + for page in pages: + for section_path in page.flat_headings_list(): + ranking = [RankingEntry(page.page_name, section_path, p.para_id, r, s, paragraph_content=p) for p,s,r in ranking] + format_run(writer, ranking, exp_name='test') + + f.close() + +This ensures that the output is correctly formatted to work with `trec_eval` and the provided qrels file. + +Run [trec_eval](https://github.com/usnistgov/trec_eval/blob/master/README) version 9.0.4 as usual: + + trec_eval -q release.qrel runfile > run.eval + +The output is compatible with the eval plotting package [minir-plots](https://github.com/laura-dietz/minir-plots). For example run + + python column.py --out column-plot.pdf --metric map run.eval + python column_difficulty.py --out column-difficulty-plot.pdf --metric map run.eval run2.eval + +Moreover, you can compute success statistics such as hurts/helps or a paired-t-test as follows. + + python hurtshelps.py --metric map run.eval run2.eval + python paired-ttest.py --metric map run.eval run2.eval + + + + +<a rel="license" href="http://creativecommons.org/licenses/by-sa/3.0/"><img alt="Creative Commons License" style="border-width:0" src="https://i.creativecommons.org/l/by-sa/3.0/88x31.png" /></a><br /><span xmlns:dct="http://purl.org/dc/terms/" href="http://purl.org/dc/dcmitype/Dataset" property="dct:title" rel="dct:type">TREC-CAR Dataset</span> by <a xmlns:cc="http://creativecommons.org/ns#" href="trec-car.cs.unh.edu" property="cc:attributionName" rel="cc:attributionURL">Laura Dietz, Ben Gamari</a> is licensed under a <a rel="license" href="http://creativecommons.org/licenses/by-sa/3.0/">Creative Commons Attribution-ShareAlike 3.0 Unported License</a>.<br />Based on a work at <a xmlns:dct="http://purl.org/dc/terms/" href="www.wikipedia.org" rel="dct:source">www.wikipedia.org</a>. diff --git a/vendors/trec-car-tools/python3/Makefile b/vendors/trec-car-tools/python3/Makefile new file mode 100644 index 00000000..4f1a4bc4 --- /dev/null +++ b/vendors/trec-car-tools/python3/Makefile @@ -0,0 +1,225 @@ +# Makefile for Sphinx documentation +# + +# You can set these variables from the command line. +SPHINXOPTS = +SPHINXBUILD = sphinx-build +PAPER = +BUILDDIR = _build + +# Internal variables. +PAPEROPT_a4 = -D latex_paper_size=a4 +PAPEROPT_letter = -D latex_paper_size=letter +ALLSPHINXOPTS = -d $(BUILDDIR)/doctrees $(PAPEROPT_$(PAPER)) $(SPHINXOPTS) . +# the i18n builder cannot share the environment and doctrees with the others +I18NSPHINXOPTS = $(PAPEROPT_$(PAPER)) $(SPHINXOPTS) . + +.PHONY: help +help: + @echo "Please use \`make <target>' where <target> is one of" + @echo " html to make standalone HTML files" + @echo " dirhtml to make HTML files named index.html in directories" + @echo " singlehtml to make a single large HTML file" + @echo " pickle to make pickle files" + @echo " json to make JSON files" + @echo " htmlhelp to make HTML files and a HTML help project" + @echo " qthelp to make HTML files and a qthelp project" + @echo " applehelp to make an Apple Help Book" + @echo " devhelp to make HTML files and a Devhelp project" + @echo " epub to make an epub" + @echo " epub3 to make an epub3" + @echo " latex to make LaTeX files, you can set PAPER=a4 or PAPER=letter" + @echo " latexpdf to make LaTeX files and run them through pdflatex" + @echo " latexpdfja to make LaTeX files and run them through platex/dvipdfmx" + @echo " text to make text files" + @echo " man to make manual pages" + @echo " texinfo to make Texinfo files" + @echo " info to make Texinfo files and run them through makeinfo" + @echo " gettext to make PO message catalogs" + @echo " changes to make an overview of all changed/added/deprecated items" + @echo " xml to make Docutils-native XML files" + @echo " pseudoxml to make pseudoxml-XML files for display purposes" + @echo " linkcheck to check all external links for integrity" + @echo " doctest to run all doctests embedded in the documentation (if enabled)" + @echo " coverage to run coverage check of the documentation (if enabled)" + @echo " dummy to check syntax errors of document sources" + +.PHONY: clean +clean: + rm -rf $(BUILDDIR)/* + +.PHONY: html +html: + $(SPHINXBUILD) -b html $(ALLSPHINXOPTS) $(BUILDDIR)/html + @echo + @echo "Build finished. The HTML pages are in $(BUILDDIR)/html." + +.PHONY: dirhtml +dirhtml: + $(SPHINXBUILD) -b dirhtml $(ALLSPHINXOPTS) $(BUILDDIR)/dirhtml + @echo + @echo "Build finished. The HTML pages are in $(BUILDDIR)/dirhtml." + +.PHONY: singlehtml +singlehtml: + $(SPHINXBUILD) -b singlehtml $(ALLSPHINXOPTS) $(BUILDDIR)/singlehtml + @echo + @echo "Build finished. The HTML page is in $(BUILDDIR)/singlehtml." + +.PHONY: pickle +pickle: + $(SPHINXBUILD) -b pickle $(ALLSPHINXOPTS) $(BUILDDIR)/pickle + @echo + @echo "Build finished; now you can process the pickle files." + +.PHONY: json +json: + $(SPHINXBUILD) -b json $(ALLSPHINXOPTS) $(BUILDDIR)/json + @echo + @echo "Build finished; now you can process the JSON files." + +.PHONY: htmlhelp +htmlhelp: + $(SPHINXBUILD) -b htmlhelp $(ALLSPHINXOPTS) $(BUILDDIR)/htmlhelp + @echo + @echo "Build finished; now you can run HTML Help Workshop with the" \ + ".hhp project file in $(BUILDDIR)/htmlhelp." + +.PHONY: qthelp +qthelp: + $(SPHINXBUILD) -b qthelp $(ALLSPHINXOPTS) $(BUILDDIR)/qthelp + @echo + @echo "Build finished; now you can run "qcollectiongenerator" with the" \ + ".qhcp project file in $(BUILDDIR)/qthelp, like this:" + @echo "# qcollectiongenerator $(BUILDDIR)/qthelp/trec-car-tools.qhcp" + @echo "To view the help file:" + @echo "# assistant -collectionFile $(BUILDDIR)/qthelp/trec-car-tools.qhc" + +.PHONY: applehelp +applehelp: + $(SPHINXBUILD) -b applehelp $(ALLSPHINXOPTS) $(BUILDDIR)/applehelp + @echo + @echo "Build finished. The help book is in $(BUILDDIR)/applehelp." + @echo "N.B. You won't be able to view it unless you put it in" \ + "~/Library/Documentation/Help or install it in your application" \ + "bundle." + +.PHONY: devhelp +devhelp: + $(SPHINXBUILD) -b devhelp $(ALLSPHINXOPTS) $(BUILDDIR)/devhelp + @echo + @echo "Build finished." + @echo "To view the help file:" + @echo "# mkdir -p $$HOME/.local/share/devhelp/trec-car-tools" + @echo "# ln -s $(BUILDDIR)/devhelp $$HOME/.local/share/devhelp/trec-car-tools" + @echo "# devhelp" + +.PHONY: epub +epub: + $(SPHINXBUILD) -b epub $(ALLSPHINXOPTS) $(BUILDDIR)/epub + @echo + @echo "Build finished. The epub file is in $(BUILDDIR)/epub." + +.PHONY: epub3 +epub3: + $(SPHINXBUILD) -b epub3 $(ALLSPHINXOPTS) $(BUILDDIR)/epub3 + @echo + @echo "Build finished. The epub3 file is in $(BUILDDIR)/epub3." + +.PHONY: latex +latex: + $(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex + @echo + @echo "Build finished; the LaTeX files are in $(BUILDDIR)/latex." + @echo "Run \`make' in that directory to run these through (pdf)latex" \ + "(use \`make latexpdf' here to do that automatically)." + +.PHONY: latexpdf +latexpdf: + $(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex + @echo "Running LaTeX files through pdflatex..." + $(MAKE) -C $(BUILDDIR)/latex all-pdf + @echo "pdflatex finished; the PDF files are in $(BUILDDIR)/latex." + +.PHONY: latexpdfja +latexpdfja: + $(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex + @echo "Running LaTeX files through platex and dvipdfmx..." + $(MAKE) -C $(BUILDDIR)/latex all-pdf-ja + @echo "pdflatex finished; the PDF files are in $(BUILDDIR)/latex." + +.PHONY: text +text: + $(SPHINXBUILD) -b text $(ALLSPHINXOPTS) $(BUILDDIR)/text + @echo + @echo "Build finished. The text files are in $(BUILDDIR)/text." + +.PHONY: man +man: + $(SPHINXBUILD) -b man $(ALLSPHINXOPTS) $(BUILDDIR)/man + @echo + @echo "Build finished. The manual pages are in $(BUILDDIR)/man." + +.PHONY: texinfo +texinfo: + $(SPHINXBUILD) -b texinfo $(ALLSPHINXOPTS) $(BUILDDIR)/texinfo + @echo + @echo "Build finished. The Texinfo files are in $(BUILDDIR)/texinfo." + @echo "Run \`make' in that directory to run these through makeinfo" \ + "(use \`make info' here to do that automatically)." + +.PHONY: info +info: + $(SPHINXBUILD) -b texinfo $(ALLSPHINXOPTS) $(BUILDDIR)/texinfo + @echo "Running Texinfo files through makeinfo..." + make -C $(BUILDDIR)/texinfo info + @echo "makeinfo finished; the Info files are in $(BUILDDIR)/texinfo." + +.PHONY: gettext +gettext: + $(SPHINXBUILD) -b gettext $(I18NSPHINXOPTS) $(BUILDDIR)/locale + @echo + @echo "Build finished. The message catalogs are in $(BUILDDIR)/locale." + +.PHONY: changes +changes: + $(SPHINXBUILD) -b changes $(ALLSPHINXOPTS) $(BUILDDIR)/changes + @echo + @echo "The overview file is in $(BUILDDIR)/changes." + +.PHONY: linkcheck +linkcheck: + $(SPHINXBUILD) -b linkcheck $(ALLSPHINXOPTS) $(BUILDDIR)/linkcheck + @echo + @echo "Link check complete; look for any errors in the above output " \ + "or in $(BUILDDIR)/linkcheck/output.txt." + +.PHONY: doctest +doctest: + $(SPHINXBUILD) -b doctest $(ALLSPHINXOPTS) $(BUILDDIR)/doctest + @echo "Testing of doctests in the sources finished, look at the " \ + "results in $(BUILDDIR)/doctest/output.txt." + +.PHONY: coverage +coverage: + $(SPHINXBUILD) -b coverage $(ALLSPHINXOPTS) $(BUILDDIR)/coverage + @echo "Testing of coverage in the sources finished, look at the " \ + "results in $(BUILDDIR)/coverage/python.txt." + +.PHONY: xml +xml: + $(SPHINXBUILD) -b xml $(ALLSPHINXOPTS) $(BUILDDIR)/xml + @echo + @echo "Build finished. The XML files are in $(BUILDDIR)/xml." + +.PHONY: pseudoxml +pseudoxml: + $(SPHINXBUILD) -b pseudoxml $(ALLSPHINXOPTS) $(BUILDDIR)/pseudoxml + @echo + @echo "Build finished. The pseudo-XML files are in $(BUILDDIR)/pseudoxml." + +.PHONY: dummy +dummy: + $(SPHINXBUILD) -b dummy $(ALLSPHINXOPTS) $(BUILDDIR)/dummy + @echo + @echo "Build finished. Dummy builder generates no files." diff --git a/vendors/trec-car-tools/python3/README.mkd b/vendors/trec-car-tools/python3/README.mkd new file mode 100644 index 00000000..0cd79b04 --- /dev/null +++ b/vendors/trec-car-tools/python3/README.mkd @@ -0,0 +1,4 @@ +# TREC CAR Python library + +See [ReadTheDocs](https://trec-car-tools.readthedocs.io/en/latest/) for Python +usage and reference documentation. diff --git a/vendors/trec-car-tools/python3/annotated_content.py b/vendors/trec-car-tools/python3/annotated_content.py new file mode 100644 index 00000000..25998e6b --- /dev/null +++ b/vendors/trec-car-tools/python3/annotated_content.py @@ -0,0 +1,115 @@ +# This is an example on how to access content of TREC CAR data +# and convert it into a string of content with offset-based entity link annotations. +# Feel free to use the AnnotatedContentBuilder +# I highly recommend that you implement your own version `annotate_section_content` +# because you need to make decisions on which content to include, where to +# futher provide newlines etc. +# Keep in mind, whatever you add to your output needs to go through the +# AnnotatedContenBuilder or offsets won't match +# you can add all kinds of semantic annotations on offsets. However, in the current +# implementation they much be non-overlapping. + + + +from trec_car.read_data import * + +class Annotation(): + """Wraps a semantic annotation with offset information """ + def __init__(self, start, end, annotation): + self.start = start + self.end = end + self.annotation = annotation + +class AnnotatedContentBuilder(): + """Builds a string iteratively and keeps track of offsets. + Chunks of plain text and semantic annotations need to added in order + """ + def __init__(self): + self.content = "" + self.offset = 0 + self.annotations = [] + + def append(self, chunk, optAnnotation=None): + start = self.offset + self.content += chunk + self.offset = len(self.content) + end = self.offset + if optAnnotation: + self.annotations.append( Annotation(start=start, end=end, annotation=optAnnotation)) + + def get_content(self): + return self.content + + def get_annotations(self): + return self.annotations + + +def annotate_section_content(section): + """ Example implementation to break out the content of a (top-level) section with entity links """ + def annotated_content(skel, contentBuilder): + if isinstance(skel, Section): + contentBuilder.append('\n') + contentBuilder.append(skel.heading) + contentBuilder.append('\n') + for child in skel.children: + annotated_content(child, contentBuilder) + # contentBuilder.append('\n') + + elif isinstance(skel, List): + annotated_content(skel.body, contentBuilder) + + elif isinstance(skel, Para): + for body in skel.paragraph.bodies: + annotated_content_bodies(body, contentBuilder) + contentBuilder.append('\n') + else: + pass + + def annotated_content_bodies(body, contentBuilder): + if isinstance(body, ParaLink): + contentBuilder.append(body.get_text(), body) + + elif isinstance(body, ParaText): + contentBuilder.append(body.get_text()) + + else: + pass + + contentBuilder = AnnotatedContentBuilder() + for child in section.children: + annotated_content(child, contentBuilder) + return contentBuilder + + + + + +if __name__ == '__main__': + + import sys + + if len(sys.argv)<1 or len(sys.argv)>3: + print("usage ",sys.argv[0]," articlefile") + exit() + + articles=sys.argv[1] + + + + with open(articles, 'rb') as f: + for p in iter_pages(f): + print('\npagename:', p.page_name) + print('\npageid:', p.page_id) + + + print("get content of top-level sections, with subsections inlined and broken out entity offsets") + for section in p.child_sections: + + print(" == ",section.heading ," ==") + + builder = annotate_section_content(section) + print(builder.get_content()) + for ann in builder.get_annotations(): + print(ann.start, ann.end, ann.annotation) + + print() diff --git a/vendors/trec-car-tools/python3/conf.py b/vendors/trec-car-tools/python3/conf.py new file mode 100644 index 00000000..5c683ae3 --- /dev/null +++ b/vendors/trec-car-tools/python3/conf.py @@ -0,0 +1,236 @@ +# -*- coding: utf-8 -*- +# +# trec-car-tools documentation build configuration file, created by +# sphinx-quickstart on Fri Nov 10 09:43:28 2017. +# +# This file is execfile()d with the current directory set to its +# containing dir. +# +# Note that not all possible configuration values are present in this +# autogenerated file. +# +# All configuration values have a default; values that are commented out +# serve to show the default. +# + +import os +import sys +sys.path.insert(0, os.path.abspath('.')) + +# -- General configuration ------------------------------------------------ + +# If your documentation needs a minimal Sphinx version, state it here. +# +# needs_sphinx = '1.0' + +# Add any Sphinx extension module names here, as strings. They can be +# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom +# ones. +extensions = [ + 'sphinx.ext.coverage', + 'sphinx.ext.mathjax', + 'sphinx.ext.viewcode', + 'sphinx.ext.autodoc', +] + +# Add any paths that contain templates here, relative to this directory. +templates_path = ['_templates'] + +# The suffix(es) of source filenames. +# You can specify multiple suffix as a list of string: +# +# source_suffix = ['.rst', '.md'] +source_suffix = '.rst' + +# The encoding of source files. +# +# source_encoding = 'utf-8-sig' + +# The master toctree document. +master_doc = 'index' + +# General information about the project. +project = u'trec-car-tools' +copyright = u'2017, Ben Gamari, Laura Dietz' +author = u'Ben Gamari, Laura Dietz' + +# The version info for the project you're documenting, acts as replacement for +# |version| and |release|, also used in various other places throughout the +# built documents. +# +# The short X.Y version. +version = u'1.0' +# The full version, including alpha/beta/rc tags. +release = u'1.0' + +# The language for content autogenerated by Sphinx. Refer to documentation +# for a list of supported languages. +# +# This is also used if you do content translation via gettext catalogs. +# Usually you set "language" from the command line for these cases. +language = None + +# There are two options for replacing |today|: either, you set today to some +# non-false value, then it is used: +# +# today = '' +# +# Else, today_fmt is used as the format for a strftime call. +# +# today_fmt = '%B %d, %Y' + +# List of patterns, relative to source directory, that match files and +# directories to ignore when looking for source files. +# This patterns also effect to html_static_path and html_extra_path +exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store'] + +# The reST default role (used for this markup: `text`) to use for all +# documents. +# +# default_role = None + +# If true, '()' will be appended to :func: etc. cross-reference text. +# +# add_function_parentheses = True + +# If true, the current module name will be prepended to all description +# unit titles (such as .. function::). +# +# add_module_names = True + +# If true, sectionauthor and moduleauthor directives will be shown in the +# output. They are ignored by default. +# +# show_authors = False + +# The name of the Pygments (syntax highlighting) style to use. +pygments_style = 'sphinx' + +# A list of ignored prefixes for module index sorting. +# modindex_common_prefix = [] + +# If true, keep warnings as "system message" paragraphs in the built documents. +# keep_warnings = False + +# If true, `todo` and `todoList` produce output, else they produce nothing. +todo_include_todos = False + + +# -- Options for HTML output ---------------------------------------------- + +# The theme to use for HTML and HTML Help pages. See the documentation for +# a list of builtin themes. +# +html_theme = 'alabaster' + +# Theme options are theme-specific and customize the look and feel of a theme +# further. For a list of options available for each theme, see the +# documentation. +# +# html_theme_options = {} + +# Add any paths that contain custom themes here, relative to this directory. +# html_theme_path = [] + +# The name for this set of Sphinx documents. +# "<project> v<release> documentation" by default. +# +# html_title = u'trec-car-tools v1.0' + +# A shorter title for the navigation bar. Default is the same as html_title. +# +# html_short_title = None + +# The name of an image file (relative to this directory) to place at the top +# of the sidebar. +# +# html_logo = None + +# The name of an image file (relative to this directory) to use as a favicon of +# the docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32 +# pixels large. +# +# html_favicon = None + +# Add any paths that contain custom static files (such as style sheets) here, +# relative to this directory. They are copied after the builtin static files, +# so a file named "default.css" will overwrite the builtin "default.css". +html_static_path = ['_static'] + +# Add any extra paths that contain custom files (such as robots.txt or +# .htaccess) here, relative to this directory. These files are copied +# directly to the root of the documentation. +# +# html_extra_path = [] + +# If not None, a 'Last updated on:' timestamp is inserted at every page +# bottom, using the given strftime format. +# The empty string is equivalent to '%b %d, %Y'. +# +# html_last_updated_fmt = None + +# If true, SmartyPants will be used to convert quotes and dashes to +# typographically correct entities. +# +# html_use_smartypants = True + +# Custom sidebar templates, maps document names to template names. +# +# html_sidebars = {} + +# Additional templates that should be rendered to pages, maps page names to +# template names. +# +# html_additional_pages = {} + +# If false, no module index is generated. +# +# html_domain_indices = True + +# If false, no index is generated. +# +# html_use_index = True + +# If true, the index is split into individual pages for each letter. +# +# html_split_index = False + +# If true, links to the reST sources are added to the pages. +# +# html_show_sourcelink = True + +# If true, "Created using Sphinx" is shown in the HTML footer. Default is True. +# +# html_show_sphinx = True + +# If true, "(C) Copyright ..." is shown in the HTML footer. Default is True. +# +# html_show_copyright = True + +# If true, an OpenSearch description file will be output, and all pages will +# contain a <link> tag referring to it. The value of this option must be the +# base URL from which the finished HTML is served. +# +# html_use_opensearch = '' + +# This is the file name suffix for HTML files (e.g. ".xhtml"). +# html_file_suffix = None + +# Language to be used for generating the HTML full-text search index. +# Sphinx supports the following languages: +# 'da', 'de', 'en', 'es', 'fi', 'fr', 'hu', 'it', 'ja' +# 'nl', 'no', 'pt', 'ro', 'ru', 'sv', 'tr', 'zh' +# +# html_search_language = 'en' + +# A dictionary with options for the search language support, empty by default. +# 'ja' uses this config value. +# 'zh' user can custom change `jieba` dictionary path. +# +# html_search_options = {'type': 'default'} + +# The name of a javascript file (relative to the configuration directory) that +# implements a search results scorer. If empty, the default will be used. +# +# html_search_scorer = 'scorer.js' + diff --git a/vendors/trec-car-tools/python3/format_runs_test.py b/vendors/trec-car-tools/python3/format_runs_test.py new file mode 100644 index 00000000..54cae7c2 --- /dev/null +++ b/vendors/trec-car-tools/python3/format_runs_test.py @@ -0,0 +1,40 @@ +from trec_car.format_runs import * +from trec_car.read_data import * +import itertools +import sys + +if len(sys.argv)<3: + print("usage ",sys.argv[0]," outlinefile paragraphfile out") + exit() + +query_cbor=sys.argv[1] +psg_cbor=sys.argv[2] +out=sys.argv[3] + +pages = [] +with open(query_cbor, 'rb') as f: + pages = [p for p in itertools.islice(iter_annotations(f), 0, 1000)] + + +paragraphs = [] +with open(psg_cbor, 'rb') as f: + d = {p.para_id: p for p in itertools.islice(iter_paragraphs(f), 0, 500 ,5)} + paragraphs = d.values() + +print("pages: ", len(pages)) +print("paragraphs: ", len(paragraphs)) + +mock_ranking = [(p, 1.0 / (r + 1), (r + 1)) for p, r in zip(paragraphs, range(0, 1000))] + +with open(out,mode='w', encoding='UTF-8') as f: + writer = f + numqueries = 0 + for page in pages: + for section_path in page.flat_headings_list(): + numqueries += 1 + query_id = "/".join([page.page_id]+[section.headingId for section in section_path]) + ranking = [RankingEntry(query_id, p.para_id, r, s, paragraph_content=p) for p, s, r in mock_ranking] + format_run(writer, ranking, exp_name='test') + + f.close() + print("num queries = ", numqueries) diff --git a/vendors/trec-car-tools/python3/index.rst b/vendors/trec-car-tools/python3/index.rst new file mode 100644 index 00000000..ec6434e8 --- /dev/null +++ b/vendors/trec-car-tools/python3/index.rst @@ -0,0 +1,141 @@ +trec-car-tools +============== + +This is the documentation for ``trec-car-tools``, a Python 3 library for reading +and manipulating the `TREC Complex Answer Retrieval +<http://trec-car.cs.unh.edu/>`_ (CAR) dataset. + +Getting started +--------------- + +This library requires Python 3.3 or greater. It can can be installed with +``setup.py`` :: + + python3 ./setup.py install + +If you are using `Anaconda <https://www.anaconda.com/>`_, install the ``cbor`` +library for Python 3.6: :: + + conda install -c laura-dietz cbor=1.0.0 + +Once you have installed the library, you can download a `dataset +<http://trec-car.cs.unh.edu/datareleases/>`_ and start playing. + +Reading the dataset +------------------- + +The TREC CAR dataset consists of a number of different exports. These include, + + * Annotations files (also called "pages files") contain full Wikipedia pages and their contents + * Paragraphs files contain only paragraphs disembodied from their pages + * Outlines files contain only the section structure of pages and no textual content + +To read an annotations file use the :func:`iter_annotations` function: + +.. autofunction:: trec_car.read_data.iter_annotations + +For instance, to list the page IDs of pages in a pages file one might write + +.. code-block:: python + + for page in read_data.iter_annotations(open('train.test200.cbor', 'rb')): + print(page.pageId) + +Likewise, to read a paragraphs file the :func:`iter_paragraphs` function is +provided + +.. autofunction:: trec_car.read_data.iter_paragraphs + +To list the text of all paragraphs in a paragarphs file one might write, + +.. code-block:: python + + for para in read_data.iter_paragraphs(open('train.test200.cbor', 'rb')): + print(para.getText()) + +Basic types +----------- + +.. class:: trec_car.read_data.PageName + + :class:`PageName` represents the natural language "name" of a page. Note that + this means that it is not necessarily unique. If you need a unique handle for + a page use :class:`PageId`. + +.. class:: trec_car.read_data.PageId + + A :class:`PageId` is the unique identifier for a :class:`Page`. + +The :class:`Page` type +---------------------- + +.. autoclass:: trec_car.read_data.Page + :members: + +.. autoclass:: trec_car.read_data.PageMetadata + :members: + +Types of pages +~~~~~~~~~~~~~~ + +.. autoclass:: trec_car.read_data.PageType + + The abstact base class. + +.. autoclass:: trec_car.read_data.ArticlePage +.. autoclass:: trec_car.read_data.CategoryPage +.. autoclass:: trec_car.read_data.DisambiguationPage +.. autoclass:: trec_car.read_data.RedirectPage + :members: + +Page structure +-------------- + +The high-level structure of a :class:`Page` is captured by the subclasses of +:class:`PageSkeleton`. + +.. autoclass:: trec_car.read_data.PageSkeleton + :members: + +.. autoclass:: trec_car.read_data.Para + :members: + :show-inheritance: + +.. autoclass:: trec_car.read_data.Section + :members: + :show-inheritance: + +.. autoclass:: trec_car.read_data.List + :members: + :show-inheritance: + +.. autoclass:: trec_car.read_data.Image + :members: + :show-inheritance: + +Paragraph contents +------------------ + +.. autoclass:: trec_car.read_data.Paragraph + :members: + +.. autoclass:: trec_car.read_data.ParaBody + :members: + +.. autoclass:: trec_car.read_data.ParaText + :members: + :show-inheritance: + +.. autoclass:: trec_car.read_data.ParaLink + :members: + :show-inheritance: + + + +Indices and tables +================== + +* :ref:`genindex` +* :ref:`modindex` +* :ref:`search` + diff --git a/vendors/trec-car-tools/python3/read_data_test.py b/vendors/trec-car-tools/python3/read_data_test.py new file mode 100644 index 00000000..4ebecef0 --- /dev/null +++ b/vendors/trec-car-tools/python3/read_data_test.py @@ -0,0 +1,97 @@ +from trec_car.read_data import * +import sys + +if len(sys.argv)<1 or len(sys.argv)>3: + print("usage ",sys.argv[0]," articlefile [outlinefile paragraphfile]") + exit() + +articles=sys.argv[1] + + +# to open either pages or outlines use iter_annotations +# See docstrings of respective objects for more documentation. + +with open(articles, 'rb') as f: + for p in iter_pages(f): + print('\npagename:', p.page_name) + print('\npageid:', p.page_id) + print('\nmeta:', p.page_meta) + + # get infoboxes + print('\ninfoboxes:') + for box in p.get_infoboxes(): + print(box) + print() + + # get one data structure with nested (heading, [children]) pairs + headings = p.nested_headings() + # print("headings", [section.heading for (section, content) in headings]) + + print("sections with content: ") + for (section, _) in headings: + if section: + print (section.get_text()) + + print("sections with content: ") + for section in p.child_sections: + if section: + print ('== ', section.heading ,' ==') + print (section.get_text_with_headings(False)) + + if len(p.outline())>0: + print( p.outline()[0].__str__()) + + print('deep headings= ', [ (str(section.heading), len(children)) for (section, children) in p.deep_headings_list()]) + + print('flat headings= ' ,["/".join([str(section.heading) for section in sectionpath]) for sectionpath in p.flat_headings_list()]) + + + +if (len(sys.argv)==1): + sys.exit() + +outlines=sys.argv[2] +paragraphs=sys.argv[3] + + + +with open(outlines, 'rb') as f: + for p in iter_annotations(f): + print('\npagename:', p.page_name) + + # get one data structure with nested (heading, [children]) pairs + headings = p.nested_headings() + print('headings= ', [ (str(section.heading), len(children)) for (section, children) in headings]) + + if len(p.outline())>2: + print('heading 1=', p.outline()[0]) + + print('deep headings= ', [ (str(section.heading), len(children)) for (section, children) in p.deep_headings_list()]) + + print('flat headings= ' ,["/".join([str(section.heading) for section in sectionpath]) for sectionpath in p.flat_headings_list()]) + +# exit(0) + + +with open(paragraphs, 'rb') as f: + for p in iter_paragraphs(f): + print('\n', p.para_id, ':') + + # Print just the text + texts = [elem.text if isinstance(elem, ParaText) + else elem.anchor_text + for elem in p.bodies] + print(' '.join(texts)) + + # Print just the linked entities + entities = [elem.page + for elem in p.bodies + if isinstance(elem, ParaLink)] + print(entities) + + # Print text interspersed with links as pairs (text, link) + mixed = [(elem.anchor_text, elem.page) if isinstance(elem, ParaLink) + else (elem.text, None) + for elem in p.bodies] + print(mixed) + diff --git a/vendors/trec-car-tools/python3/requirements.txt b/vendors/trec-car-tools/python3/requirements.txt new file mode 100644 index 00000000..3e51d3af --- /dev/null +++ b/vendors/trec-car-tools/python3/requirements.txt @@ -0,0 +1 @@ +cbor>=1.0.0 diff --git a/vendors/trec-car-tools/python3/setup.py b/vendors/trec-car-tools/python3/setup.py new file mode 100755 index 00000000..56ff2e47 --- /dev/null +++ b/vendors/trec-car-tools/python3/setup.py @@ -0,0 +1,23 @@ +#!/usr/bin/env python3 +from setuptools import setup + +setup( + name='trec-car-tools', + version='2.5.4', + packages=['trec_car'], + url='https://github.com/TREMA-UNH/trec-car-tools/python3', + # download_url='https://github.com/TREMA-UNH/trec-car-tools/archive/2.0.tar.gz', + keywords=['wikipedia','complex answer retrieval','trec car'], + license='BSD 3-Clause', + author='laura-dietz', + author_email='[email protected]', + description='Support tools for TREC CAR participants. Also see trec-car.cs.unh.edu', + install_requires=['cbor>=1.0.0', 'numpy>=1.11.2'], + python_requires='>=3.6', + classifiers=[ + 'Programming Language :: Python :: 3', + 'Programming Language :: Python :: 3.6', + 'Programming Language :: Python :: 3.7', + 'Programming Language :: Python :: 3.8' + ] +) diff --git a/vendors/trec-car-tools/python3/test.py b/vendors/trec-car-tools/python3/test.py new file mode 100755 index 00000000..2815766e --- /dev/null +++ b/vendors/trec-car-tools/python3/test.py @@ -0,0 +1,41 @@ +#!/usr/bin/env python3 + +from trec_car.read_data import * +import argparse + +def dump_pages(args): + for p in iter_pages(args.file): + print(p.page_meta) + print(p) + print("\n".join([("%s %s"% (heading,content)) for (heading,content) in p.deep_headings_list()])) + +def dump_outlines(args): + for p in iter_outlines(args.file): + print(p.page_meta) + print(p) + print("\n".join([("%s"% heading ) for (heading,empty_content) in p.deep_headings_list()])) + +def dump_paragraphs(args): + for p in iter_paragraphs(args.file): + print(p) + +if __name__ == '__main__': + parser = argparse.ArgumentParser() + subparser = parser.add_subparsers() + p = subparser.add_parser('pages', help='Dump pages') + p.add_argument('file', type=argparse.FileType('rb'), help='A pages file') + p.set_defaults(func=dump_pages) + + p = subparser.add_parser('outlines', help='Dump outlines') + p.add_argument('file', type=argparse.FileType('rb'), help='An outlines file') + p.set_defaults(func=dump_outlines) + + p = subparser.add_parser('paragraphs', help='Dump paragraphs') + p.add_argument('file', type=argparse.FileType('rb'), help='A paragraphs file') + p.set_defaults(func=dump_paragraphs) + + args = parser.parse_args() + if 'func' not in args: + parser.print_usage() + else: + args.func(args) diff --git a/vendors/trec-car-tools/python3/trec_car/__init__.py b/vendors/trec-car-tools/python3/trec_car/__init__.py new file mode 100644 index 00000000..ccb9b451 --- /dev/null +++ b/vendors/trec-car-tools/python3/trec_car/__init__.py @@ -0,0 +1,5 @@ +"""__init__ module for trec-car-tools, imports all necessary functions for reading cbor data provided in the TREC CAR""" + +__version__ = 1.0 + +__all__ = ['read_data', 'format_runs'] diff --git a/vendors/trec-car-tools/python3/trec_car/format_runs.py b/vendors/trec-car-tools/python3/trec_car/format_runs.py new file mode 100644 index 00000000..cc859620 --- /dev/null +++ b/vendors/trec-car-tools/python3/trec_car/format_runs.py @@ -0,0 +1,59 @@ +import csv +import urllib.parse +from typing import * + + + +def encode_section_path(page_id, section_path): + elements = [page_id] + section_path + + return '/'.join([urllib.parse.quote(elem) for elem in elements]) + # return urllib.parse.urlencode({'page':page_id, 'sectionpath':section_path}) + +def encode_page_only(page_id): + return urllib.parse.quote(page_id) + + +class RankingEntry(object): + """ + A paragraph within a Wikipedia page. + + Attributes: + paragraph The content of the Paragraph (which in turn contain a list of ParaBodys) + """ + def __init__(self, query_id:str, paragraph_id:str, rank:int, score:float, exp_name:str=None, paragraph_content:str=None): + assert(rank > 0) + self.query_id = query_id + self.paragraph_id = paragraph_id + self.rank = rank + self.score = score + self.exp_name = exp_name + self.paragraph_content = paragraph_content + + def to_trec_eval_row(self, alternative_exp_name=None, page_only=False): + exp_name_ = alternative_exp_name if alternative_exp_name is not None \ + else self.exp_name + return [self.query_id, 'Q0', self.paragraph_id, self.rank, self.score, exp_name_] + +# +# csv.register_dialect( +# 'trec_eval', +# delimiter = ' ', +# quotechar = '"', +# doublequote = False, +# skipinitialspace = False, +# lineterminator = '\n', +# quoting = csv.QUOTE_NONE) +# +# +# def configure_csv_writer(fileobj): +# 'Convenience method to create a csv writer with the trec_eval_dialect' +# return csv.writer(fileobj, dialect='trec_eval') +# + +def format_run(writer, ranking_of_paragraphs, exp_name=None): + 'write one ranking to the csv writer' + for elem in ranking_of_paragraphs: + # query-number Q0 document-id rank score Exp + writer.write(" ".join([str(x) for x in elem.to_trec_eval_row(exp_name)])) + writer.write("\n") diff --git a/vendors/trec-car-tools/python3/trec_car/read_data.py b/vendors/trec-car-tools/python3/trec_car/read_data.py new file mode 100644 index 00000000..6ba92e94 --- /dev/null +++ b/vendors/trec-car-tools/python3/trec_car/read_data.py @@ -0,0 +1,778 @@ +# Use python 3.6 or higher +# obsolete: conda install -c auto cbor=0.1.4 + +from __future__ import print_function + +from abc import abstractmethod + +import cbor +import itertools +import typing + +PageId = str +PageName = str + +class CborElementNotDefinedException(Exception): + def __init__(self, cbor): + self.cbor = cbor + Exception.__init__(self, 'unknown Cbor element encountrered: %s' % str(cbor)) + +class WrongCarFileException(Exception): + def __init__(self, file_type, expected_file_types): + self.file_type = file_type + self.expected_file_types = expected_file_types + Exception.__init__(self, 'Open method does not support CAR file type: %s. Instead expect following CAR file types: %s' % (str(file_type), str(expected_file_types))) + +class BrokenCborFileException(Exception): + def __init__(self): + Exception.__init__(self, 'Corrupt, incomplete, or otherwise broken CBOR file. Please re-download or contact the organizers or use appropriate reader to open this file.') + + +class Page(object): + """ + The name and skeleton of a Wikipedia page. + + .. attribute:: page_name + + :rtype: PageName + + The name of the page. + + .. attribute:: skeleton + + :rtype: typing.List[PageSkeleton] + + The contents of the page + + .. attribute:: page_type + + :rtype: PageType + + Type about the page + + .. attribute:: page_meta + + :rtype: PageMetadata + + Metadata about the page + """ + def __init__(self, page_name, page_id, skeleton, page_type, page_meta): + self.page_name = page_name + self.page_id = page_id + self.skeleton = list(skeleton) + self.child_sections = [child for child in self.skeleton if isinstance(child, Section)] + self.page_type = page_type + self.page_meta = page_meta + + def deep_headings_list(self): + return [child.nested_headings() for child in self.child_sections] + + def flat_headings_list(self): + """ return + Returns a flat list of headings contained by the :class:`Page`. + + :rtype: typing.List[Section] + """ + def flatten(prefix, headings): + for section, children in headings: + new_prefix = prefix + [section] + if len(children)>0 : + yield new_prefix + yield from flatten(new_prefix, children) + else: + yield new_prefix + + deep_headings = self.deep_headings_list() + return list(flatten([], deep_headings)) + + def get_infoboxes(self): + toplevel_infoboxes = [child for child in self.skeleton if isinstance(child, InfoBox)] + section_infoboxes = [section.get_infoboxes() + for sections + in self.flat_headings_list() + for section in sections] + return toplevel_infoboxes + list(itertools.chain.from_iterable(section_infoboxes)) + + + @staticmethod + def from_cbor(cbor): + + if not (cbor[0] == 0 or cbor[0] == 1): # tag + raise CborElementNotDefinedException(cbor) + pagename = cbor[1] + pageId = cbor[2].decode('ascii') + + if len(cbor)==4: + return Page(pagename, pageId, map(PageSkeleton.from_cbor, cbor[3]), ArticlePage, PageMetadata.default()) + else: + page_type = PageType.from_cbor(cbor[4]) + return Page(pagename, pageId, map(PageSkeleton.from_cbor, cbor[3]), page_type, PageMetadata.from_cbor(cbor[5])) + + def __str__(self): + return "Page(%s)" % self.page_name + + def to_string(self): + """ + Render a string representation of the page. + + :rtype: str + """ + return self.page_name + self.page_meta +\ + '\n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~' + '\n'.join(str(s) for s in self.skeleton) + + def nested_headings(self): + """ + Each heading recursively represented by a pair of ``(heading, + list_of_child_sections)``. + + :rtype: typing.List[typing.Tuple[Section, typing.List[Section]]] + """ + result = [child.nested_headings() for child in self.child_sections] + return result + + def outline(self): + return self.child_sections + + def get_text(self): + """Include all visible text below this elements. Includes Captions of images, but no headings and no infoboxes. See `get_text_with_headings` for a version that includes headings.""" + return '\n'.join(skel.get_text() for skel in self.skeleton) + + + def get_text_with_headings(self, include_heading = False): + """Include all visible text below this elements. While the heading of this element is excluded, headings of subsections will be included. Captions of images are excluded.""" + return '\n'.join(skel.get_text_with_headings(include_heading = True) for skel in self.skeleton) + +class PageType(object): + """ + An abstract base class representing the various types of pages. + + Subclasses include + + * :class:`ArticlePage` + * :class:`CategoryPage` + * :class:`DisambiguationPage` + * :class:`RedirectPage` + """ + @staticmethod + def from_cbor(cbor): + typetag = cbor[0] + if typetag == 0: return ArticlePage() + elif typetag == 1: return CategoryPage() + elif typetag == 2: return DisambiguationPage() + elif typetag == 3: + target = cbor[1] + if type(target) == list: # TODO this is almost certainly wrong + targetPage = target[1] + else: + targetPage = target.decode('ascii') + return RedirectPage(targetPage) + else: + raise CborElementNotDefinedException(cbor) + +class ArticlePage(PageType): + '' + def __init__(self): + pass + def __str__(self): return "ArticlePage" + +class CategoryPage(PageType): + def __init__(self): + pass + def __str__(self): return "CategoryPage" + +class DisambiguationPage(PageType): + def __init__(self): + pass + def __str__(self): return "Disambiguation Page" + +class RedirectPage(PageType): + """ + .. attribute:: targetPage + + :rtype: PageId + + The target of the redirect. + """ + def __init__(self, targetPage): + self.targetPage = targetPage + def __str__(self): + return "RedirectPage " + self.targetPage + +class PageMetadata(object): + """ + Meta data for a page + + .. attribute:: redirectNames + + :rtype: PageName + + Names of pages which redirect to this page + + .. attribute:: disambiguationNames + + :rtype: PageName + + Names of disambiguation pages which link to this page + + .. attribute:: disambiguationId + + :rtype: PageId + + Page IDs of disambiguation pages which link to this page + + .. attribute:: categoryNames + + :rtype: str + + Page names of categories to which this page belongs + + .. attribute:: categoryIds + + :rtype: str + + Page IDs of categories to which this page belongs + + .. attribute:: inlinkIds + + :rtype: str + + Page IDs of pages containing inlinks + + .. attribute:: inlinkAnchors + inlinkAnchor frequencies + + :rtype: str + + (Anchor text, frequency) of pages containing inlinks + """ + def __init__(self, redirectNames, disambiguationNames, disambiguationIds, categoryNames, categoryIds, inlinkIds, + inlinkAnchors): + self.inlinkAnchors = inlinkAnchors + self.inlinkIds = inlinkIds + self.categoryIds = categoryIds + self.categoryNames = categoryNames + self.disambiguationIds = disambiguationIds + self.disambiguationNames = disambiguationNames + self.redirectNames = redirectNames + + @staticmethod + def default(): + return PageMetadata(None, None, None, None, None, None, None) + + def __str__(self): + redirStr = ("" if self.redirectNames is None else (" redirected = "+", ".join([name for name in self.redirectNames]))) + disamStr = ("" if self.disambiguationNames is None else (" disambiguated = "+", ".join([name for name in self.disambiguationNames]))) + catStr = ("" if self.redirectNames is None else (" categories = "+", ".join([name for name in (self.categoryNames or [])]))) + inlinkStr = ("" if self.inlinkIds is None else (" inlinks = "+", ".join([name for name in self.inlinkIds]))) + # inlinkAnchorStr = str (self.inlinkAnchors) + inlinkAnchorStr = ("" if self.inlinkAnchors is None else + (" inlinkAnchors = "+", ".join( + [ ("%s: %d" % (name, freq)) for (name, freq) in self.inlinkAnchors] + # [ ("%s: " % (name)) for (name, freq) in self.inlinkAnchors] \ + ))) + return "%s \n%s \n%s \n%s \n%s\n" % (redirStr, disamStr, catStr, inlinkStr, inlinkAnchorStr) + + @staticmethod + def from_cbor(cbor): + redirectNames=None + disambiguationNames=None + disambiguationIds=None + categoryNames=None + categoryIds=None + inlinkIds=None + inlinkAnchors=None + + def decodeListOfIdList(cbor): + if len(cbor)==0: return None + else: + return [elem.decode('ascii') for elem in cbor] + + def decodeListOfNameList(cbor): + if len(cbor)==0: return None + else: + return cbor + + def decodeListOfNameIntList(cbor): + if len(cbor)==0: return None + else: + # need to convert list of pair-lists to lists of pair-tuples + return [(elem[0], elem[1]) for elem in cbor] + + for i in range(0, len(cbor), 2): + tag = cbor[i][0] + cbor_data = cbor[i+1] + + if tag == 0: + redirectNames = decodeListOfNameList(cbor_data) + elif tag == 1: + disambiguationNames=decodeListOfNameList(cbor_data) + elif tag == 2: + disambiguationIds=decodeListOfIdList(cbor_data) + elif tag == 3: + categoryNames=decodeListOfNameList(cbor_data) + elif tag == 4: + categoryIds=decodeListOfIdList(cbor_data) + elif tag == 5: + inlinkIds=decodeListOfIdList(cbor_data) + + elif tag == 6: + # compatability with v1.6 + inlinkAnchors = [(anchor, 1) for anchor in decodeListOfNameList(cbor_data)] + elif tag == 7: + # compatability with v2.0 + inlinkAnchors = decodeListOfNameIntList(cbor_data) + i+=2 + + return PageMetadata(redirectNames, disambiguationNames, disambiguationIds, categoryNames, categoryIds, inlinkIds, inlinkAnchors) + +class PageSkeleton(object): + """ + An abstract superclass for the various types of page elements. Subclasses include: + + * :class:`Section` + * :class:`Para` + * :class:`Image` + + """ + @staticmethod + def from_cbor(cbor): + tag = cbor[0] + if tag == 0: # section + heading = cbor[1] + headingId = cbor[2].decode('ascii') + return Section(heading, headingId, map(PageSkeleton.from_cbor, cbor[3])) + elif tag == 1: # para-wrapper + return Para(Paragraph.from_cbor(cbor[1])) + elif tag == 2: #images + imageUrl = cbor[1] + caption = [PageSkeleton.from_cbor(elem) for elem in cbor[2]] + return Image(imageUrl, caption=caption) + elif tag == 3: # paragraph + level = cbor[1] + body = Paragraph.from_cbor(cbor[2]) + return List(level, body) + elif tag == 4: # infobox + infobox_title = cbor[1] + cbor_entries = cbor[2] + entries = [ (kv[0], PageSkeleton.from_cbor(kv[1][0])) for kv in cbor_entries if kv[1] and kv[1][0]] # if no value is defined kv[1] will be null. + return InfoBox(infobox_title, entries) + else: + raise CborElementNotDefinedException(cbor) + + def get_text(self): + """Includes visible text of this element and below. Headings are excluded. Image Captions are included. Infoboxes are ignored. (For a version with headers and no captions see `get_text_with_headings` """ + raise NotImplementedError + + def get_text_with_headings(self, include_heading = False): + """Include all visible text below this elements. While the heading of this element is excluded, headings of subsections will be included. Captions of images are excluded.""" + raise NotImplementedError + + +class Section(PageSkeleton): + """ + A section of a Wikipedia page. + + .. attribute:: heading + + :rtype: str + + The section heading. + + .. attribute:: headingId + + :rtype: str + + The unique identifier of a section heading. + + .. attribute:: children + + :rtype: typing.List[PageSkeleton] + + The :class:`PageSkeleton` elements contained by the section. + """ + def __init__(self, heading, headingId, children): + self.heading = heading + self.headingId = headingId + self.children = list(children) + self.child_sections = [child for child in self.children if isinstance(child, Section)] + + def str_(self, level): + bar = "".join("="*level) + children = "".join(c.str_(level=level+1) for c in self.children) + return "\n%s %s %s\n\n%s" % (bar, self.heading, bar, children) + + def __str__(self): + return self.str_(level=1) + + def __getitem__(self, idx): + return self.children[idx] + + def nested_headings(self): + return (self, [child.nested_headings() for child in self.child_sections]) + + def get_text(self): + return '\n'.join(child.get_text() for child in self.children) + + def get_text_with_headings(self, include_heading = False): + opt_heading = self.heading + "\n" if include_heading else "" + return opt_heading + '\n'.join(child.get_text_with_headings(include_heading = True) for child in self.children) + + + def get_infoboxes(self): + return [child for child in self.children if isinstance(child, InfoBox)] + +class Para(PageSkeleton): + """ + A paragraph within a Wikipedia page. + + .. attribute:: paragraph + + :rtype: Paragraph + + The content of the Paragraph (which in turn contain a list of :class:`ParaBody`\ s) + """ + def __init__(self, paragraph): + self.paragraph = paragraph + + def str_(self, level=None): + return str(self.paragraph) + + def __str__(self): + return self.str_() + + def get_text(self): + return self.paragraph.get_text() + + def get_text_with_headings(self, include_heading = False): + return self.get_text() + +class Image(PageSkeleton): + """ + An image within a Wikipedia page. + + .. attribute:: caption + + :rtype: str + + PageSkeleton representing the caption of the image + + .. attribute:: imageurl + + :rtype: str + + URL to the image; spaces need to be replaced with underscores, Wikimedia + Commons namespace needs to be prefixed + """ + def __init__(self, imageurl, caption): + self.caption = caption + self.imageurl = imageurl + + def str_(self, level=None): + return str("!["+self.imageurl+"]. Caption: "+(''.join([str(skel) for skel in self.caption]))) + + def __str__(self): + return self.str_() + + def get_text(self): + return '\n'.join(skel.get_text() for skel in self.caption) + + def get_text_with_headings(self, include_heading = False): + return '' + +class List(PageSkeleton): + """ + An list element within a Wikipedia page. + + .. attribute:: level + + :rtype: int + + The list nesting level + + .. attribute:: body + + A :class:`Paragraph` containing the list element contents. + """ + def __init__(self, level, body): + self.level = level + self.body = body + + def str_(self, level=None): + return str("*" * self.level + " " + str(self.body) + '\n') + + def __str__(self): + return self.str_() + + + def get_text(self): + return self.body.get_text() + + def get_text_with_headings(self, include_heading = False): + return self.get_text() + + +class InfoBox(PageSkeleton): + def __init__(self, infobox_type, entries): + """ + An list element within a Wikipedia page. + + .. attribute:: infobox_type + + :rtype: str + + The title/type of the infobox + + .. attribute:: entries + + Key-value pair, where key is a string, and value is a :class:`PageSkeleton` containing the value. Values are often paragraphs or images, but they can also be lists. + """ + self.title = infobox_type + self.entries = entries + + def str_(self, level=None): + return self.title+ "\n"+ ("\n".join([key+": "+str(values) for (key,values) in self.entries])) + + def __str__(self): + return self.str_() + + + + def get_text(self): + return '' + + def get_text_with_headings(self, include_heading = False): + return '' + + +class Paragraph(object): + """ + A paragraph. + """ + def __init__(self, para_id, bodies): + self.para_id = para_id + self.bodies = list(bodies) + + @staticmethod + def from_cbor(cbor): + if (not cbor[0] == 0): + raise CborElementNotDefinedException(cbor) + + paragraphId = cbor[1].decode('ascii') + return Paragraph(paragraphId, map(ParaBody.from_cbor, cbor[2])) + + def get_text(self): + """ + Get all of the contained text. + + :rtype: str + """ + return ''.join([body.get_text() for body in self.bodies]) + + def str_(self, level=None): + return ' '.join(str(body) for body in self.bodies) + + def __str__(self): + return self.str_() + + +class ParaBody(object): + """ + An abstract superclass representing a bit of :class:`Paragraph` content. + """ + @staticmethod + def from_cbor(cbor): + tag = cbor[0] + if tag == 0: + return ParaText(cbor[1]) + elif tag == 1: + cbor_ = cbor[1] + linkSection = None + if len(cbor_[2]) == 1: + linkSection = cbor_[2][0] + linkTargetId = cbor_[3].decode('ascii') + return ParaLink(cbor_[1], linkSection, linkTargetId, cbor_[4]) + else: + raise CborElementNotDefinedException(cbor) + + @abstractmethod + def get_text(self): + """ + Get all of the text within a :class:`ParaBody`. + + :rtype: str + """ + raise NotImplementedError + +class ParaText(ParaBody): + """ + A bit of plain text from a paragraph. + + .. attribute:: text + + :rtype: str + + The text + """ + def __init__(self, text): + self.text = text + + def get_text(self): + return self.text + + def str_(self, level=None): + return self.text + + def __str__(self): + return self.str_() + + +class ParaLink(ParaBody): + """ + A link within a paragraph. + + .. attribute:: page + + :rtype: PageName + + The page name of the link target + + .. attribute:: pageid + + :rtype: PageId + + The link target as trec-car identifer + + .. attribute:: link_section + + :rtype: str + + Section anchor of link target (i.e. the part after the ``#`` in the + URL), or ``None``. + + .. attribute:: anchor_text + + :rtype: str + + The anchor text of the link + """ + def __init__(self, page, link_section, pageid, anchor_text): + self.page = page + self.pageid = pageid + self.link_section = link_section + self.anchor_text = anchor_text + + def get_text(self): + return self.anchor_text + + def str_(self, level=None): + return "[%s](%s)" % (self.anchor_text, self.page) + + def __str__(self): + return self.str_() + + +def _iter_with_header(file, parse, expected_file_types): + maybe_hdr = cbor.load(file) + if isinstance(maybe_hdr, list) and maybe_hdr[0] == 'CAR': + # we have a header + file_type = maybe_hdr[1][0] + if not file_type in expected_file_types: + # print( 'File type tag is expected to be ', (" ".join(expected_file_types)), 'but given file is of type ', file_type) + # print('Did not expect file of type', file_type) + raise WrongCarFileException(file_type, expected_file_types) + + # read beginning of variable-length list + if (not file.read(1) == b'\x9f'): + raise BrokenCborFileException() + else: + yield parse(maybe_hdr) + + while True: + try: + # Check for break symbol + if (peek_for_break(file)): + break + + yield parse(cbor.load(file)) + except EOFError: + break + +def peek_for_break(cbor): + b = cbor.peek(1) + return b[0:1] == b'\xff' + + +def iter_annotations(file): + """ + Iterate over the :class:`Page`\ s of an annotations file. + + :type file: typing.BinaryIO + :rtype: typing.Iterator[Page] + """ + return _iter_with_header(file, Page.from_cbor, [0,1]) + # return TrecCarHeader.from_cbor(file) + + + +def iter_pages(file): + """ + Iterate over the :class:`Page`\ s of an annotations file. + + :type file: typing.BinaryIO + :rtype: typing.Iterator[Page] + """ + return _iter_with_header(file, Page.from_cbor, [0]) + + + +def iter_outlines(file): + """ + Iterate over the :class:`Page`\ s of an annotations file. + + :type file: typing.BinaryIO + :rtype: typing.Iterator[Page] + """ + return _iter_with_header(file, Page.from_cbor, [1]) + + +def iter_paragraphs(file): + """ + Iterate over the :class:`Paragraph`\ s of an paragraphs file. + + :type file: typing.BinaryIO + :rtype: typing.Iterator[Paragraph] + """ + return _iter_with_header(file, Paragraph.from_cbor, [2]) + +def dump_annotations(file): + for page in iter_annotations(file): + print(page.to_string()) + +def with_toc(read_val): + class AnnotationsFile(object): + def __init__(self, fname): + """ + Read annotations from a file. + + Arguments: + fname The name of the CBOR file. A table-of-contents file is + also expected to be present. + """ + self.cbor = open(fname, 'rb') + self.toc = cbor.load(open(fname+'.toc', 'rb')) + + def keys(self): + """ The page names contained in an annotations file. """ + return self.toc.keys() + + def get(self, page): + """ Lookup a page by name. Returns a Page or None """ + offset = self.toc.get(page) + if offset is not None: + self.cbor.seek(offset) + return read_val(cbor.load(self.cbor)) + return None + return AnnotationsFile + +AnnotationsFile = with_toc(Page.from_cbor) +ParagraphsFile = with_toc(Paragraph.from_cbor) diff --git a/vendors/trec-car-tools/trec-car-tools-example/pom.xml b/vendors/trec-car-tools/trec-car-tools-example/pom.xml new file mode 100644 index 00000000..95930619 --- /dev/null +++ b/vendors/trec-car-tools/trec-car-tools-example/pom.xml @@ -0,0 +1,101 @@ +<?xml version="1.0" encoding="UTF-8"?> +<project xmlns="http://maven.apache.org/POM/4.0.0" + xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" + xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd"> + <modelVersion>4.0.0</modelVersion> + + <groupId>edu.unh.cs.treccar</groupId> + <artifactId>treccar-tools-example</artifactId> + <version>0.1</version> + + <repositories> + <repository> + <id>jitpack.io</id> + <url>https://jitpack.io</url> + </repository> + </repositories> + + <dependencies> + <dependency> + <groupId>com.github.TREMA-UNH</groupId> + <artifactId>trec-car-tools-java</artifactId> + <version>18</version> + </dependency> + <dependency> + <groupId>co.nstant.in</groupId> + <artifactId>cbor</artifactId> + <version>0.8</version> + </dependency> + <dependency> + <groupId>org.apache.commons</groupId> + <artifactId>commons-lang3</artifactId> + <version>3.3.2</version> + </dependency> + <dependency> + <groupId>org.jetbrains</groupId> + <artifactId>annotations-java5</artifactId> + <version>RELEASE</version> + </dependency> + + <!-- Only necessary for lucene indexing --> + <dependency> + <groupId>org.apache.lucene</groupId> + <artifactId>lucene-core</artifactId> + <version>7.2.0</version> + </dependency> + + </dependencies> + + <build> + <plugins> + <plugin> + <artifactId>maven-assembly-plugin</artifactId> + <version>2.2</version> + <configuration> + <descriptorRefs> + <descriptorRef>jar-with-dependencies</descriptorRef> + <!--<useUniqueVersions>false</useUniqueVersions>--> + </descriptorRefs> + <archive> + <manifest> + <mainClass>edu.unh.cs.TrecCarToolsExample</mainClass> + </manifest> + </archive> + </configuration> + </plugin> + <plugin> + <groupId>org.apache.maven.plugins</groupId> + <artifactId>maven-compiler-plugin</artifactId> + <version>3.2</version> + <configuration> + <source>1.10</source> + <target>1.10</target> + </configuration> + </plugin> + + <plugin> <!-- Create sources.jar --> + <groupId>org.apache.maven.plugins</groupId> + <artifactId>maven-source-plugin</artifactId> + <version>3.0.1</version> + <executions> + <execution> + <id>attach-sources</id> + <goals> + <goal>jar</goal> + </goals> + </execution> + </executions> + </plugin> + <plugin> + <groupId>org.apache.maven.plugins</groupId> + <artifactId>maven-release-plugin</artifactId> + <configuration> + <goals>assembly:single</goals> + </configuration> + </plugin> + + </plugins> + </build> + + +</project> diff --git a/vendors/trec-car-tools/trec-car-tools-example/src/main/java/edu/unh/cs/TrecCarBuildLuceneIndex.java b/vendors/trec-car-tools/trec-car-tools-example/src/main/java/edu/unh/cs/TrecCarBuildLuceneIndex.java new file mode 100644 index 00000000..1d438325 --- /dev/null +++ b/vendors/trec-car-tools/trec-car-tools-example/src/main/java/edu/unh/cs/TrecCarBuildLuceneIndex.java @@ -0,0 +1,220 @@ +package edu.unh.cs; + +import edu.unh.cs.treccar_v2.Data; +import edu.unh.cs.treccar_v2.read_data.CborFileTypeException; +import edu.unh.cs.treccar_v2.read_data.CborRuntimeException; +import edu.unh.cs.treccar_v2.read_data.DeserializeData; +import org.apache.lucene.analysis.standard.StandardAnalyzer; +import org.apache.lucene.document.*; +import org.apache.lucene.index.IndexWriter; +import org.apache.lucene.index.IndexWriterConfig; +import org.apache.lucene.store.Directory; +import org.apache.lucene.store.FSDirectory; +import org.jetbrains.annotations.NotNull; + +import java.io.*; +import java.nio.file.FileSystems; +import java.nio.file.Path; +import java.util.Collections; +import java.util.Iterator; + +/* + * User: dietz + * Date: 1/4/18 + * Time: 1:23 PM + */ + +/** + * Example of how to build a lucene index of trec car paragraphs + */ +public class TrecCarBuildLuceneIndex { + + private static void usage() { + System.out.println("Command line parameters: paragraphs paragraphCBOR LuceneINDEX"); + System.exit(-1); + } + + public static void main(String[] args) throws IOException { + System.setProperty("file.encoding", "UTF-8"); + + if (args.length < 3) + usage(); + + String mode = args[0]; + String indexPath = args[2]; + + if (mode.equals("paragraphs")) { + final String paragraphsFile = args[1]; + final FileInputStream fileInputStream2 = new FileInputStream(new File(paragraphsFile)); + + System.out.println("Creating paragraph index in "+indexPath); + final IndexWriter indexWriter = setupIndexWriter(indexPath, "paragraph.lucene"); + final Iterator<Data.Paragraph> paragraphIterator = DeserializeData.iterParagraphs(fileInputStream2); + + for (int i=1; paragraphIterator.hasNext(); i++){ + final Document doc = paragraphToLuceneDoc(paragraphIterator.next()); + indexWriter.addDocument(doc); + if (i % 10000 == 0) { + System.out.print('.'); + indexWriter.commit(); + } + } + + System.out.println("\n Done indexing."); + + indexWriter.commit(); + indexWriter.close(); + } + else if (mode.equals("pages")) { + final String pagesFile = args[1]; + final FileInputStream fileInputStream = new FileInputStream(new File(pagesFile)); + + System.out.println("Creating page index in "+indexPath); + final IndexWriter indexWriter = setupIndexWriter(indexPath, "pages.lucene"); + + final Iterator<Data.Page> pageIterator = DeserializeData.iterAnnotations(fileInputStream); + + for (int i=1; pageIterator.hasNext(); i++){ + final Document doc = pageToLuceneDoc(pageIterator.next()); + indexWriter.addDocument(doc); + if (i % 10000 == 0) { + System.out.print('.'); + indexWriter.commit(); + } + } + + System.out.println("\n Done indexing."); + + + indexWriter.commit(); + indexWriter.close(); + } + } + + private static Iterable<Document> toIterable(final Iterator<Document> iter) throws CborRuntimeException, CborFileTypeException { + return new Iterable<Document>() { + @Override + @NotNull + public Iterator<Document> iterator() { + return iter; + } + }; + } + + + public static class ParaToLuceneIterator implements Iterator<Document> { + private static final int DEBUG_EVERY = 10000; + private int counter = DEBUG_EVERY; + private final Iterator<Data.Paragraph> paragraphIterator; + + ParaToLuceneIterator(Iterator<Data.Paragraph> paragraphIterator){ + this.paragraphIterator = paragraphIterator; + } + + @Override + public boolean hasNext() { + return this.paragraphIterator.hasNext(); + } + + @Override + public Document next() { + counter --; + if(counter < 0) { + System.out.print('.'); + counter = DEBUG_EVERY; + } + + Data.Paragraph p = this.paragraphIterator.next(); + return paragraphToLuceneDoc(p); + } + + @Override + public void remove() { + this.paragraphIterator.remove(); + } + } + + @NotNull + private static Document paragraphToLuceneDoc(Data.Paragraph p) { + final Document doc = new Document(); + final String content = p.getTextOnly(); // <-- Todo Adapt this to your needs! + doc.add(new TextField("text", content, Field.Store.YES)); + doc.add(new StringField("paragraphid", p.getParaId(), Field.Store.YES)); // don't tokenize this! + return doc; + } + + + public static class PageToLuceneIterator implements Iterator<Document> { + private static final int DEBUG_EVERY = 1000; + private int counter = DEBUG_EVERY; + private final Iterator<Data.Page> pageIterator; + + PageToLuceneIterator(Iterator<Data.Page> pageIterator){ + this.pageIterator = pageIterator; + } + + @Override + public boolean hasNext() { + return this.pageIterator.hasNext(); + } + + @Override + public Document next() { + counter --; + if(counter < 0) { + System.out.print('.'); + counter = DEBUG_EVERY; + } + + Data.Page p = this.pageIterator.next(); + return pageToLuceneDoc(p); + } + + @Override + public void remove() { + this.pageIterator.remove(); + } + } + + @NotNull + private static Document pageToLuceneDoc(Data.Page p) { + final Document doc = new Document(); + StringBuilder content = new StringBuilder(); + pageContent(p, content); // Todo Adapt this to your needs! + + doc.add(new TextField("text", content.toString(), Field.Store.NO)); // dont store, just index + doc.add(new StringField("pageid", p.getPageId(), Field.Store.YES)); // don't tokenize this! + return doc; + } + + + private static void sectionContent(Data.Section section, StringBuilder content){ + content.append(section.getHeading()+'\n'); + for (Data.PageSkeleton skel: section.getChildren()) { + if (skel instanceof Data.Section) sectionContent((Data.Section) skel, content); + else if (skel instanceof Data.Para) paragraphContent((Data.Para) skel, content); + else { + } + } + } + private static void paragraphContent(Data.Para paragraph, StringBuilder content){ + content.append(paragraph.getParagraph().getTextOnly()).append('\n'); + } + private static void pageContent(Data.Page page, StringBuilder content){ + content.append(page.getPageName()).append('\n'); + + for(Data.PageSkeleton skel: page.getSkeleton()){ + if(skel instanceof Data.Section) sectionContent((Data.Section) skel, content); + else if(skel instanceof Data.Para) paragraphContent((Data.Para) skel, content); + else {} // ignore other + } + + } + @NotNull + private static IndexWriter setupIndexWriter(String indexPath, String typeIndex) throws IOException { + Path path = FileSystems.getDefault().getPath(indexPath, typeIndex); + Directory indexDir = FSDirectory.open(path); + IndexWriterConfig config = new IndexWriterConfig(new StandardAnalyzer()); + return new IndexWriter(indexDir, config); + } +} \ No newline at end of file diff --git a/vendors/trec-car-tools/trec-car-tools-example/src/main/java/edu/unh/cs/TrecCarQueryLuceneIndex.java b/vendors/trec-car-tools/trec-car-tools-example/src/main/java/edu/unh/cs/TrecCarQueryLuceneIndex.java new file mode 100644 index 00000000..97eec091 --- /dev/null +++ b/vendors/trec-car-tools/trec-car-tools-example/src/main/java/edu/unh/cs/TrecCarQueryLuceneIndex.java @@ -0,0 +1,231 @@ +package edu.unh.cs; + +import edu.unh.cs.treccar_v2.Data; +import edu.unh.cs.treccar_v2.read_data.CborFileTypeException; +import edu.unh.cs.treccar_v2.read_data.CborRuntimeException; +import edu.unh.cs.treccar_v2.read_data.DeserializeData; +import org.apache.lucene.analysis.TokenStream; +import org.apache.lucene.analysis.standard.StandardAnalyzer; +import org.apache.lucene.analysis.tokenattributes.CharTermAttribute; +import org.apache.lucene.document.Document; +import org.apache.lucene.index.*; +import org.apache.lucene.search.*; +import org.apache.lucene.search.similarities.BM25Similarity; +import org.apache.lucene.store.Directory; +import org.apache.lucene.store.FSDirectory; +import org.jetbrains.annotations.NotNull; + +import java.io.File; +import java.io.FileInputStream; +import java.io.IOException; +import java.io.StringReader; +import java.nio.file.FileSystems; +import java.nio.file.Path; +import java.util.ArrayList; +import java.util.Collections; +import java.util.Iterator; +import java.util.List; + +/* + * User: dietz + * Date: 1/4/18 + * Time: 1:23 PM + */ + +/** + * Example of how to build a lucene index of trec car paragraphs + */ +public class TrecCarQueryLuceneIndex { + + private static void usage() { + System.out.println("Command line parameters: action OutlineCBOR LuceneINDEX\n" + + "action is one of output-sections | paragraphs-run-sections | paragraphs-run-pages | pages-run-pages"); + System.exit(-1); + } + + static class MyQueryBuilder { + + private final StandardAnalyzer analyzer; + private List<String> tokens; + + public MyQueryBuilder(StandardAnalyzer standardAnalyzer){ + analyzer = standardAnalyzer; + tokens = new ArrayList<>(128); + } + + public BooleanQuery toQuery(String queryStr) throws IOException { + + TokenStream tokenStream = analyzer.tokenStream("text", new StringReader(queryStr)); + tokenStream.reset(); + tokens.clear(); + while (tokenStream.incrementToken()) { + final String token = tokenStream.getAttribute(CharTermAttribute.class).toString(); + tokens.add(token); + } + tokenStream.end(); + tokenStream.close(); + BooleanQuery.Builder booleanQuery = new BooleanQuery.Builder(); + for (String token : tokens) { + booleanQuery.add(new TermQuery(new Term("text", token)), BooleanClause.Occur.SHOULD); + } + return booleanQuery.build(); + } + } + + public static void main(String[] args) throws IOException { + System.setProperty("file.encoding", "UTF-8"); + + if (args.length < 3) + usage(); + + String mode = args[0]; + String indexPath = args[2]; + + + if (mode.equals("output-sections")) { + IndexSearcher searcher = setupIndexSearcher(indexPath, "paragraph.lucene"); + + searcher.setSimilarity(new BM25Similarity()); + final MyQueryBuilder queryBuilder = new MyQueryBuilder(new StandardAnalyzer()); + + final String pagesFile = args[1]; + final FileInputStream fileInputStream3 = new FileInputStream(new File(pagesFile)); + for (Data.Page page : DeserializeData.iterableAnnotations(fileInputStream3)) { + System.out.println("\n\nPage: "+page.getPageId()); + for (List<Data.Section> sectionPath : page.flatSectionPaths()) { + System.out.println(); + System.out.println(Data.sectionPathId(page.getPageId(), sectionPath) + " \t " + Data.sectionPathHeadings(sectionPath)); + + String queryStr = buildSectionQueryStr(page, sectionPath); + + // get top 10 documents + TopDocs tops = searcher.search(queryBuilder.toQuery(queryStr), 10); + ScoreDoc[] scoreDoc = tops.scoreDocs; + System.out.println("Found "+scoreDoc.length+" results."); + for (ScoreDoc score : scoreDoc) { + final Document doc = searcher.doc(score.doc); // to access stored content + // print score and internal docid + System.out.println(doc.getField("paragraphid").stringValue()+ " (" + score.doc + "): SCORE " + score.score); + // access and print content + System.out.println(" " +doc.getField("text").stringValue()); + } + + } + System.out.println(); + } + } else if (mode.equals("paragraphs-run-sections")) { + IndexSearcher searcher = setupIndexSearcher(indexPath, "paragraph.lucene"); + + searcher.setSimilarity(new BM25Similarity()); + final MyQueryBuilder queryBuilder = new MyQueryBuilder(new StandardAnalyzer()); + + final String pagesFile = args[1]; + final FileInputStream fileInputStream3 = new FileInputStream(new File(pagesFile)); + for (Data.Page page : DeserializeData.iterableAnnotations(fileInputStream3)) { + for (List<Data.Section> sectionPath : page.flatSectionPaths()) { + final String queryId = Data.sectionPathId(page.getPageId(), sectionPath); + + String queryStr = buildSectionQueryStr(page, sectionPath); + + TopDocs tops = searcher.search(queryBuilder.toQuery(queryStr), 100); + ScoreDoc[] scoreDoc = tops.scoreDocs; + for (int i = 0; i < scoreDoc.length; i++) { + ScoreDoc score = scoreDoc[i]; + final Document doc = searcher.doc(score.doc); // to access stored content + // print score and internal docid + final String paragraphid = doc.getField("paragraphid").stringValue(); + final float searchScore = score.score; + final int searchRank = i+1; + + System.out.println(queryId+" Q0 "+paragraphid+" "+searchRank + " "+searchScore+" Lucene-BM25"); + } + + } + } + } else if (mode.equals("paragraphs-run-pages")) { + IndexSearcher searcher = setupIndexSearcher(indexPath, "paragraph.lucene"); + + searcher.setSimilarity(new BM25Similarity()); + final MyQueryBuilder queryBuilder = new MyQueryBuilder(new StandardAnalyzer()); + + final String pagesFile = args[1]; + final FileInputStream fileInputStream3 = new FileInputStream(new File(pagesFile)); + for (Data.Page page : DeserializeData.iterableAnnotations(fileInputStream3)) { + final String queryId = page.getPageId(); + + String queryStr = buildSectionQueryStr(page, Collections.<Data.Section>emptyList()); + + TopDocs tops = searcher.search(queryBuilder.toQuery(queryStr), 100); + ScoreDoc[] scoreDoc = tops.scoreDocs; + for (int i = 0; i < scoreDoc.length; i++) { + ScoreDoc score = scoreDoc[i]; + final Document doc = searcher.doc(score.doc); // to access stored content + // print score and internal docid + final String paragraphid = doc.getField("paragraphid").stringValue(); + final float searchScore = score.score; + final int searchRank = i+1; + + System.out.println(queryId+" Q0 "+paragraphid+" "+searchRank + " "+searchScore+" Lucene-BM25"); + } + + } + } else if (mode.equals("pages-run-pages")) { + IndexSearcher searcher = setupIndexSearcher(indexPath, "pages.lucene"); + + searcher.setSimilarity(new BM25Similarity()); + final MyQueryBuilder queryBuilder = new MyQueryBuilder(new StandardAnalyzer()); + + final String pagesFile = args[1]; + final FileInputStream fileInputStream3 = new FileInputStream(new File(pagesFile)); + for (Data.Page page : DeserializeData.iterableAnnotations(fileInputStream3)) { + final String queryId = page.getPageId(); + + String queryStr = buildSectionQueryStr(page, Collections.<Data.Section>emptyList()); + + TopDocs tops = searcher.search(queryBuilder.toQuery(queryStr), 100); + ScoreDoc[] scoreDoc = tops.scoreDocs; + for (int i = 0; i < scoreDoc.length; i++) { + ScoreDoc score = scoreDoc[i]; + final Document doc = searcher.doc(score.doc); // to access stored content + // print score and internal docid + final String paragraphid = doc.getField("pageid").stringValue(); + final float searchScore = score.score; + final int searchRank = i+1; + + System.out.println(queryId+" Q0 "+paragraphid+" "+searchRank + " "+searchScore+" Lucene-BM25"); + } + + } + } + } + + @NotNull + private static IndexSearcher setupIndexSearcher(String indexPath, String typeIndex) throws IOException { + Path path = FileSystems.getDefault().getPath(indexPath, typeIndex); + Directory indexDir = FSDirectory.open(path); + IndexReader reader = DirectoryReader.open(indexDir); + return new IndexSearcher(reader); + } + + @NotNull + private static String buildSectionQueryStr(Data.Page page, List<Data.Section> sectionPath) { + StringBuilder queryStr = new StringBuilder(); + queryStr.append(page.getPageName()); + for (Data.Section section: sectionPath) { + queryStr.append(" ").append(section.getHeading()); + } +// System.out.println("queryStr = " + queryStr); + return queryStr.toString(); + } + + private static Iterable<Document> toIterable(final Iterator<Document> iter) throws CborRuntimeException, CborFileTypeException { + return new Iterable<Document>() { + @Override + @NotNull + public Iterator<Document> iterator() { + return iter; + } + }; + } + +} \ No newline at end of file diff --git a/vendors/trec-car-tools/trec-car-tools-example/src/main/java/edu/unh/cs/TrecCarToolsExample.java b/vendors/trec-car-tools/trec-car-tools-example/src/main/java/edu/unh/cs/TrecCarToolsExample.java new file mode 100644 index 00000000..0243d0bf --- /dev/null +++ b/vendors/trec-car-tools/trec-car-tools-example/src/main/java/edu/unh/cs/TrecCarToolsExample.java @@ -0,0 +1,63 @@ +package edu.unh.cs; + +import edu.unh.cs.treccar_v2.Data; +import edu.unh.cs.treccar_v2.read_data.DeserializeData; + +import java.io.File; +import java.io.FileInputStream; +import java.util.List; + +/** + * User: dietz + * Date: 12/9/16 + * Time: 5:17 PM + */ +public class TrecCarToolsExample { + private static void usage() { + System.out.println("Command line parameters: (header|pages|outlines|paragraphs) FILE"); + System.exit(-1); + } + + public static void main(String[] args) throws Exception { + System.setProperty("file.encoding", "UTF-8"); + + if (args.length<2) + usage(); + + String mode = args[0]; + if (mode.equals("header")) { + final String pagesFile = args[1]; + final FileInputStream fileInputStream = new FileInputStream(new File(pagesFile)); + System.out.println(DeserializeData.getTrecCarHeader(fileInputStream)); + System.out.println(); + } + else if (mode.equals("pages")) { + final String pagesFile = args[1]; + final FileInputStream fileInputStream = new FileInputStream(new File(pagesFile)); + for(Data.Page page: DeserializeData.iterableAnnotations(fileInputStream)) { + System.out.println(page); + System.out.println(); + } + } else if (mode.equals("outlines")) { + final String pagesFile = args[1]; + final FileInputStream fileInputStream3 = new FileInputStream(new File(pagesFile)); + for(Data.Page page: DeserializeData.iterableAnnotations(fileInputStream3)) { + for (List<Data.Section> sectionPath : page.flatSectionPaths()){ + System.out.println(Data.sectionPathId(page.getPageId(), sectionPath)+" \t "+Data.sectionPathHeadings(sectionPath)); + } + System.out.println(); + } + } else if (mode.equals("paragraphs")) { + final String paragraphsFile = args[1]; + final FileInputStream fileInputStream2 = new FileInputStream(new File(paragraphsFile)); + for(Data.Paragraph p: DeserializeData.iterableParagraphs(fileInputStream2)) { + System.out.println(p); + System.out.println(); + } + } else { + usage(); + } + + } + +}
4bfaf3e14e59406abe93e2fa22e72fb918e66628
Sylvain Lesage
2021-07-29T10:41:59
test: 💍 (quality) change output format, and use multiprocessing
diff --git a/quality/test_datasets.py b/quality/test_datasets.py index a9ddf7b2..3c9fb9ed 100644 --- a/quality/test_datasets.py +++ b/quality/test_datasets.py @@ -3,0 +4 @@ from tqdm import tqdm +from tqdm.contrib.concurrent import process_map @@ -7 +8,5 @@ from datasets import list_datasets -from datasets_preview_backend.main import extract_dataset_rows +from datasets_preview_backend.main import ( + get_dataset_config_names, + get_config_splits, + extract_split_rows, +) @@ -10 +15,43 @@ from datasets_preview_backend.main import extract_dataset_rows -def export_all_datasets_exceptions(): +def get_config_names_report(dataset_id: str): + try: + config_names = get_dataset_config_names(dataset_id) + return { + "dataset_id": dataset_id, + "config_names": list(config_names), + "success": True, + "exception": None, + "message": None, + } + except Exception as err: + return { + "dataset_id": dataset_id, + "config_names": [], + "success": False, + "exception": str(type(err).__name__), + "message": str(err), + } + + +def get_split_names_report(dataset_id: str, config_name: str): + try: + split_names = get_config_splits(dataset_id, config_name) + return { + "dataset_id": dataset_id, + "config_name": config_name, + "split_names": list(split_names), + "success": True, + "exception": None, + "message": None, + } + except Exception as err: + return { + "dataset_id": dataset_id, + "config_name": config_name, + "split_names": [], + "success": False, + "exception": str(type(err).__name__), + "message": str(err), + } + + +def get_rows_report(dataset_id: str, config_name: str, split_name: str): @@ -11,0 +59,24 @@ def export_all_datasets_exceptions(): + try: + extract = extract_split_rows(dataset_id, config_name, split_name, num_rows) + if len(extract["rows"]) != num_rows: + raise ValueError(f"{len(extract['rows'])} rows instead of {num_rows}") + return { + "dataset_id": dataset_id, + "config_name": config_name, + "split_name": split_name, + "success": True, + "exception": None, + "message": None, + } + except Exception as err: + return { + "dataset_id": dataset_id, + "config_name": config_name, + "split_name": split_name, + "success": False, + "exception": str(type(err).__name__), + "message": str(err), + } + + +def export_all_datasets_exceptions(): @@ -14,34 +85,37 @@ def export_all_datasets_exceptions(): - results = [] - - for dataset_id in tqdm(dataset_ids): - - success = False - try: - extract = extract_dataset_rows(dataset_id, num_rows) - exception = "" - config_names = extract["configs"].keys() - split_names = set() - for config_name, config in extract["configs"].items(): - for split_name, split in config["splits"].items(): - split_names.add(split_name) - if len(split["rows"]) != num_rows: - raise ValueError( - f"{len(split['rows'])} rows instead of {num_rows} in {config_name} - {split_name}" - ) - success = True - message = "" - except Exception as err: - exception = str(type(err).__name__) - message = str(err) - config_names = [] - split_names = [] - results.append( - { - "dataset_id": dataset_id, - "success": success, - "exception": exception, - "message": message, - "all_config_names": list(config_names), - "all_split_names": list(split_names), - } - ) + print("Get config names for all the datasets") + config_names_reports = process_map( + get_config_names_report, + dataset_ids, + ) + + print("Get split names for all the pairs (dataset_id, config_name)") + split_names_dataset_ids = [] + split_names_config_names = [] + for report in config_names_reports: + for config_name in report["config_names"]: + # reports with an exception will not contribute to the lists since config_names is empty + split_names_dataset_ids.append(report["dataset_id"]) + split_names_config_names.append(config_name) + split_names_reports = process_map( + get_split_names_report, split_names_dataset_ids, split_names_config_names + ) + + print("Get rows extract for all the tuples (dataset_id, config_name, split_name)") + rows_dataset_ids = [] + rows_config_names = [] + rows_split_names = [] + for report in split_names_reports: + for split_name in report["split_names"]: + # reports with an exception will not contribute to the lists since split_names is empty + rows_dataset_ids.append(report["dataset_id"]) + rows_config_names.append(report["config_name"]) + rows_split_names.append(split_name) + rows_reports = process_map( + get_rows_report, rows_dataset_ids, rows_config_names, rows_split_names + ) + + results = { + "config_names_reports": config_names_reports, + "split_names_reports": split_names_reports, + "rows_reports": rows_reports, + }
46432aef51cf08fe89b649541afb3324ca0ec921
Sylvain Lesage
2021-07-29T08:40:25
feat: 🎸 return all the splits for all the configs of a dataset
diff --git a/quality/test_datasets.py b/quality/test_datasets.py index 2db7a4fa..a9ddf7b2 100644 --- a/quality/test_datasets.py +++ b/quality/test_datasets.py @@ -7 +7 @@ from datasets import list_datasets -from datasets_preview_backend.main import get_dataset_extract +from datasets_preview_backend.main import extract_dataset_rows @@ -11 +11 @@ def export_all_datasets_exceptions(): - num_rows = 100 + num_rows = 10 @@ -16 +16 @@ def export_all_datasets_exceptions(): - for dataset_id in tqdm(dataset_ids[0:2]): + for dataset_id in tqdm(dataset_ids): @@ -20 +20 @@ def export_all_datasets_exceptions(): - extract = get_dataset_extract(dataset_id, num_rows) + extract = extract_dataset_rows(dataset_id, num_rows) @@ -22,2 +22,9 @@ def export_all_datasets_exceptions(): - if len(extract) != num_rows: - raise f"{len(extract)} rows instead of {num_rows}" + config_names = extract["configs"].keys() + split_names = set() + for config_name, config in extract["configs"].items(): + for split_name, split in config["splits"].items(): + split_names.add(split_name) + if len(split["rows"]) != num_rows: + raise ValueError( + f"{len(split['rows'])} rows instead of {num_rows} in {config_name} - {split_name}" + ) @@ -28,0 +36,2 @@ def export_all_datasets_exceptions(): + config_names = [] + split_names = [] @@ -34,0 +44,2 @@ def export_all_datasets_exceptions(): + "all_config_names": list(config_names), + "all_split_names": list(split_names), diff --git a/src/datasets_preview_backend/main.py b/src/datasets_preview_backend/main.py index db197807..798fc570 100644 --- a/src/datasets_preview_backend/main.py +++ b/src/datasets_preview_backend/main.py @@ -13 +13,8 @@ import uvicorn -from datasets import load_dataset, prepare_module, import_main_class +from datasets import ( + Dataset, + IterableDataset, + load_dataset, + load_dataset_builder, + prepare_module, + import_main_class, +) @@ -35,0 +43,11 @@ class ConfigNameError(Error): +class SplitError(Error): + """Exception raised for errors in the split name. + + Attributes: + split -- the erroneous dataset split + """ + + def __init__(self, split): + self.split = split + + @@ -64 +82 @@ def get_dataset_config_names(dataset_id: str) -> List[str]: -def get_dataset_config_extract(dataset_id: str, config_name: str, num_rows: int): +def get_config_splits(dataset_id: str, config_name: str) -> List[str]: @@ -66,3 +84 @@ def get_dataset_config_extract(dataset_id: str, config_name: str, num_rows: int) - dataset = load_dataset( - dataset_id, name=config_name, split="train", streaming=True - ) + builder = load_dataset_builder(dataset_id, name=config_name) @@ -74,0 +91 @@ def get_dataset_config_extract(dataset_id: str, config_name: str, num_rows: int) + return builder.info.splits.keys() @@ -76 +92,0 @@ def get_dataset_config_extract(dataset_id: str, config_name: str, num_rows: int) - logging.debug(f"Dataset loaded") @@ -78 +94,19 @@ def get_dataset_config_extract(dataset_id: str, config_name: str, num_rows: int) - rows = list(dataset.take(num_rows)) +def extract_split_rows(dataset_id: str, config_name: str, split: str, num_rows: int): + logging.debug( + f"asked for {num_rows} first rows of dataset {dataset_id} - {config_name} - {split}" + ) + + try: + dataset: IterableDataset = load_dataset( + dataset_id, name=config_name, split=split, streaming=True + ) + except ValueError as err: + message = str(err) + if message.startswith(f"BuilderConfig {config_name} not found"): + raise ConfigNameError(config_name=config_name) + elif message.startswith(f'Unknown split "{split}".') or message.startswith( + f"Bad split: {split}." + ): + raise SplitError(split=split) + else: + raise @@ -79,0 +114 @@ def get_dataset_config_extract(dataset_id: str, config_name: str, num_rows: int) + rows = list(dataset.take(num_rows)) @@ -82 +117 @@ def get_dataset_config_extract(dataset_id: str, config_name: str, num_rows: int) - f"could not read all the required rows ({len(rows)} / {num_rows})" + f"could not read all the required rows ({len(rows)} / {num_rows}) from dataset {dataset_id} - {config_name} - {split}" @@ -85 +120,23 @@ def get_dataset_config_extract(dataset_id: str, config_name: str, num_rows: int) - return {"dataset_id": dataset_id, "config_name": config_name, "rows": rows} + return { + "dataset_id": dataset_id, + "config_name": config_name, + "split": split, + "rows": rows, + } + + +def extract_config_rows(dataset_id: str, config_name: str, num_rows: int): + logging.debug( + f"asked for {num_rows} first rows of dataset {dataset_id} - {config_name}" + ) + + splits = get_config_splits(dataset_id, config_name) + + return { + "dataset_id": dataset_id, + "config_name": config_name, + "splits": { + split: extract_split_rows(dataset_id, config_name, split, num_rows) + for split in splits + }, + } @@ -88,3 +145,2 @@ def get_dataset_config_extract(dataset_id: str, config_name: str, num_rows: int) -def get_dataset_extract(dataset_id: str, num_rows: int): - # TODO: manage splits - logging.debug(f"Asked for {num_rows} first rows of dataset {dataset_id}") +def extract_dataset_rows(dataset_id: str, num_rows: int): + logging.debug(f"asked for {num_rows} first rows of dataset {dataset_id}") @@ -97 +153 @@ def get_dataset_extract(dataset_id: str, num_rows: int): - config_name: get_dataset_config_extract(dataset_id, config_name, num_rows) + config_name: extract_config_rows(dataset_id, config_name, num_rows) @@ -110 +166 @@ async def extract(request: Request): - return JSONResponse(get_dataset_extract(dataset_id, num_rows)) + return JSONResponse(extract_dataset_rows(dataset_id, num_rows)) diff --git a/tests/test_main.py b/tests/test_main.py index 70b4db62..28c369c5 100644 --- a/tests/test_main.py +++ b/tests/test_main.py @@ -5 +5 @@ from datasets_preview_backend.main import ( - get_dataset_extract, + SplitError, @@ -7 +7,4 @@ from datasets_preview_backend.main import ( - get_dataset_config_extract, + get_config_splits, + extract_dataset_rows, + extract_config_rows, + extract_split_rows, @@ -21 +24,12 @@ def test_get_configs(): -def test_extract_without_config(): +def test_get_splits(): # sourcery skip: extract-duplicate-method + splits = get_config_splits("acronym_identification", None) + assert len(splits) == 3 + assert "train" in splits + + splits = get_config_splits("glue", "ax") + assert len(splits) == 1 + assert "test" in splits + assert "train" not in splits + + +def test_extract_split_rows(): @@ -23,0 +38 @@ def test_extract_without_config(): + split = "train" @@ -25 +40 @@ def test_extract_without_config(): - extract = get_dataset_config_extract(dataset_id, config_name, num_rows) + extract = extract_split_rows(dataset_id, config_name, split, num_rows) @@ -27,0 +43 @@ def test_extract_without_config(): + assert "split" in extract and extract["split"] == split @@ -34,15 +50 @@ def test_extract_without_config(): -def test_extract_with_config(): - dataset_id = "glue" - config_name = "cola" - num_rows = 100 - extract = get_dataset_config_extract(dataset_id, config_name, num_rows) - assert "config_name" in extract and extract["config_name"] == config_name - rows = extract["rows"] - assert len(rows) == 100 - assert ( - rows[0]["sentence"] - == "Our friends won't buy this analysis, let alone the next one we propose." - ) - - -def test_extract_num_rows(): +def test_extract_split_rows_num_rows(): @@ -50,0 +53 @@ def test_extract_num_rows(): + split = "train" @@ -52 +55 @@ def test_extract_num_rows(): - extract = get_dataset_config_extract(dataset_id, config_name, num_rows) + extract = extract_split_rows(dataset_id, config_name, split, num_rows) @@ -60 +63,3 @@ def test_extract_unknown_config(): - get_dataset_config_extract("glue", "doesnotexist", 100) + extract_config_rows("glue", "doesnotexist", 100) + with pytest.raises(ConfigNameError): + extract_split_rows("glue", "doesnotexist", "train", 100) @@ -64,4 +69,2 @@ def test_extract_unknown_split(): - # "aeslc" dataset has no "train" split, while "train" is the hardcoded split used to download - extract = get_dataset_config_extract("aeslc", None, 100) - rows = extract["rows"] - assert len(rows) == 0 + with pytest.raises(SplitError): + extract_split_rows("glue", "ax", "train", 100) @@ -70 +73,21 @@ def test_extract_unknown_split(): -def test_extract_dataset_without_config(): +def test_extract_config_rows(): + dataset_id = "glue" + config_name = "cola" + num_rows = 100 + extract = extract_config_rows(dataset_id, config_name, num_rows) + assert "dataset_id" in extract and extract["dataset_id"] == dataset_id + assert "config_name" in extract and extract["config_name"] == config_name + assert "splits" in extract + splits = extract["splits"] + assert len(splits) == 3 + assert "train" in splits + split = splits["train"] + rows = split["rows"] + assert len(rows) == 100 + assert ( + rows[0]["sentence"] + == "Our friends won't buy this analysis, let alone the next one we propose." + ) + + +def test_extract_dataset(): @@ -73 +96 @@ def test_extract_dataset_without_config(): - extract = get_dataset_extract(dataset_id, num_rows) + extract = extract_dataset_rows(dataset_id, num_rows) @@ -79,2 +102 @@ def test_extract_dataset_without_config(): - assert len(configs[None]["rows"]) == num_rows - + assert len(configs[None]["splits"]["train"]["rows"]) == num_rows @@ -82 +103,0 @@ def test_extract_dataset_without_config(): -def test_extract_dataset_with_configs(): @@ -85 +106 @@ def test_extract_dataset_with_configs(): - extract = get_dataset_extract(dataset_id, num_rows) + extract = extract_dataset_rows(dataset_id, num_rows) @@ -89,2 +110,2 @@ def test_extract_dataset_with_configs(): - assert len(configs["adversarialQA"]["rows"]) == num_rows - assert configs["adversarialQA"]["rows"][0]["title"] == "Brain" + assert len(configs["adversarialQA"]["splits"]["train"]["rows"]) == num_rows + assert configs["adversarialQA"]["splits"]["train"]["rows"][0]["title"] == "Brain" @@ -95 +116 @@ def test_extract_unknown_dataset(): - get_dataset_extract("doesnotexist", 100) + extract_dataset_rows("doesnotexist", 100)
6ed484a65332ccab5b22c08d6e1d6095c704d9a4
Sylvain Lesage
2021-07-28T15:39:54
feat: 🎸 (extract) change structure to return all configurations
diff --git a/src/datasets_preview_backend/main.py b/src/datasets_preview_backend/main.py index f38087af..db197807 100644 --- a/src/datasets_preview_backend/main.py +++ b/src/datasets_preview_backend/main.py @@ -3,0 +4,3 @@ import os +from datasets.builder import DatasetBuilder +from typing import List + @@ -10 +13 @@ import uvicorn -from datasets import load_dataset +from datasets import load_dataset, prepare_module, import_main_class @@ -15,0 +19,17 @@ DEFAULT_EXTRACT_ROWS_LIMIT = 100 +class Error(Exception): + """Base class for exceptions in this module.""" + + pass + + +class ConfigNameError(Error): + """Exception raised for errors in the config name. + + Attributes: + config_name -- the erroneous dataset config_name + """ + + def __init__(self, config_name): + self.config_name = config_name + + @@ -34,3 +54,8 @@ async def healthcheck(request: Request): -def get_dataset_extract(dataset_id: str, num_rows: int): - # TODO: manage splits and configs - logging.debug(f"Asked for {num_rows} first rows of dataset {dataset_id}") +def get_dataset_config_names(dataset_id: str) -> List[str]: + module_path, *_ = prepare_module(dataset_id, dataset=True) + builder_cls = import_main_class(module_path, dataset=True) + config_names = [c.name for c in builder_cls.BUILDER_CONFIGS] or [None] + logging.debug( + f"The dataset builder has {len(config_names)} configs: {config_names}" + ) + return config_names @@ -38 +63,12 @@ def get_dataset_extract(dataset_id: str, num_rows: int): - dataset = load_dataset(dataset_id, split="train", streaming=True) + +def get_dataset_config_extract(dataset_id: str, config_name: str, num_rows: int): + try: + dataset = load_dataset( + dataset_id, name=config_name, split="train", streaming=True + ) + except ValueError as err: + message = str(err) + if message.startswith(f"BuilderConfig {config_name} not found"): + raise ConfigNameError(config_name=config_name) + else: + raise @@ -49 +85,16 @@ def get_dataset_extract(dataset_id: str, num_rows: int): - return rows + return {"dataset_id": dataset_id, "config_name": config_name, "rows": rows} + + +def get_dataset_extract(dataset_id: str, num_rows: int): + # TODO: manage splits + logging.debug(f"Asked for {num_rows} first rows of dataset {dataset_id}") + + config_names = get_dataset_config_names(dataset_id) + + return { + "dataset_id": dataset_id, + "configs": { + config_name: get_dataset_config_extract(dataset_id, config_name, num_rows) + for config_name in config_names + }, + } diff --git a/tests/test_main.py b/tests/test_main.py index 116b35bc..70b4db62 100644 --- a/tests/test_main.py +++ b/tests/test_main.py @@ -2 +1,0 @@ import pytest -from datasets import list_datasets @@ -4 +3,6 @@ from datasets import list_datasets -from datasets_preview_backend.main import get_dataset_extract +from datasets_preview_backend.main import ( + ConfigNameError, + get_dataset_extract, + get_dataset_config_names, + get_dataset_config_extract, +) @@ -7,4 +11,35 @@ from datasets_preview_backend.main import get_dataset_extract -def test_extract_ok(): - extract = get_dataset_extract("acronym_identification", 100) - assert len(extract) == 100 - assert extract[0]["tokens"][0] == "What" +def test_get_configs(): + config_names = get_dataset_config_names("acronym_identification") + assert len(config_names) == 1 + assert config_names[0] is None + + config_names = get_dataset_config_names("glue") + assert len(config_names) == 12 + assert "cola" in config_names + + +def test_extract_without_config(): + dataset_id = "acronym_identification" + config_name = None + num_rows = 100 + extract = get_dataset_config_extract(dataset_id, config_name, num_rows) + assert "dataset_id" in extract and extract["dataset_id"] == dataset_id + assert "config_name" in extract and extract["config_name"] == config_name + assert "rows" in extract + rows = extract["rows"] + assert len(rows) == num_rows + assert rows[0]["tokens"][0] == "What" + + +def test_extract_with_config(): + dataset_id = "glue" + config_name = "cola" + num_rows = 100 + extract = get_dataset_config_extract(dataset_id, config_name, num_rows) + assert "config_name" in extract and extract["config_name"] == config_name + rows = extract["rows"] + assert len(rows) == 100 + assert ( + rows[0]["sentence"] + == "Our friends won't buy this analysis, let alone the next one we propose." + ) @@ -14,3 +49,12 @@ def test_extract_num_rows(): - extract = get_dataset_extract("acronym_identification", 20) - assert len(extract) == 20 - assert extract[0]["tokens"][0] == "What" + dataset_id = "acronym_identification" + config_name = None + num_rows = 20 + extract = get_dataset_config_extract(dataset_id, config_name, num_rows) + rows = extract["rows"] + assert len(rows) == 20 + assert rows[0]["tokens"][0] == "What" + + +def test_extract_unknown_config(): + with pytest.raises(ConfigNameError): + get_dataset_config_extract("glue", "doesnotexist", 100) @@ -21,2 +65,3 @@ def test_extract_unknown_split(): - extract = get_dataset_extract("aeslc", 100) - assert len(extract) == 0 + extract = get_dataset_config_extract("aeslc", None, 100) + rows = extract["rows"] + assert len(rows) == 0 @@ -25,3 +70,11 @@ def test_extract_unknown_split(): -def test_extract_unknown_model(): - with pytest.raises(FileNotFoundError): - get_dataset_extract("doesnotexist", 100) +def test_extract_dataset_without_config(): + dataset_id = "acronym_identification" + num_rows = 100 + extract = get_dataset_extract(dataset_id, num_rows) + assert "dataset_id" in extract and extract["dataset_id"] == dataset_id + assert "configs" in extract + configs = extract["configs"] + assert None in configs + assert len(configs) == 1 + assert len(configs[None]["rows"]) == num_rows + @@ -28,0 +82,9 @@ def test_extract_unknown_model(): +def test_extract_dataset_with_configs(): + dataset_id = "adversarial_qa" + num_rows = 100 + extract = get_dataset_extract(dataset_id, num_rows) + configs = extract["configs"] + assert len(configs) == 4 + assert "adversarialQA" in configs + assert len(configs["adversarialQA"]["rows"]) == num_rows + assert configs["adversarialQA"]["rows"][0]["title"] == "Brain" @@ -30,3 +92,4 @@ def test_extract_unknown_model(): -def test_extract_subset_not_implemented(): - with pytest.raises(ValueError, match="Config name is missing..*"): - get_dataset_extract("glue", 100) + +def test_extract_unknown_dataset(): + with pytest.raises(FileNotFoundError): + get_dataset_extract("doesnotexist", 100)
fbcfa5371cd38d24ee012f4f8d44a7bbce4fd640
Sylvain Lesage
2021-07-28T12:22:56
test: 💍 add a script to generate a report of all Exceptions
diff --git a/Makefile b/Makefile index 52b88f2b..08c4239b 100644 --- a/Makefile +++ b/Makefile @@ -0,0 +1,2 @@ +.PHONY: install run test quality watch + @@ -9,0 +12,3 @@ test: +quality: + poetry run python quality/test_datasets.py + diff --git a/poetry.lock b/poetry.lock index 97716d17..80d02e45 100644 --- a/poetry.lock +++ b/poetry.lock @@ -76 +76 @@ description = "Atomic file writes." -category = "main" +category = "dev" @@ -283 +283 @@ description = "iniconfig: brain-dead simple config-ini parsing" -category = "main" +category = "dev" @@ -361 +361 @@ description = "plugin and hook calling mechanisms for python" -category = "main" +category = "dev" @@ -372 +372 @@ description = "library with cross-python path, ini-parsing, io, code, log facili -category = "main" +category = "dev" @@ -399 +399 @@ description = "pytest: simple powerful testing with Python" -category = "main" +category = "dev" @@ -503 +503 @@ description = "Python Library for Tom's Obvious, Minimal Language" -category = "main" +category = "dev" @@ -606 +606 @@ python-versions = "^3.8" -content-hash = "464a59b79e0ffae394c5b77d4bc3d871158d4fb0b6ad8e7c2054f64d0c3c2321" +content-hash = "7e0e1ab05dac16e809f2bc9bb7c4998f492b5fdcf5bafd5b6f5f289ab2ec06b1" diff --git a/pyproject.toml b/pyproject.toml index 0aab884b..de3d95ba 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -12 +11,0 @@ uvicorn = "^0.14.0" -pytest = "^6.2.4" @@ -16,0 +16,2 @@ watchdog = {extras = ["watchmedo"], version = "^2.1.3"} +tqdm = "^4.61.2" +pytest = "^6.2.4" diff --git a/quality/test_datasets.py b/quality/test_datasets.py new file mode 100644 index 00000000..2db7a4fa --- /dev/null +++ b/quality/test_datasets.py @@ -0,0 +1,46 @@ +import json +import time +from tqdm import tqdm + +from datasets import list_datasets + +from datasets_preview_backend.main import get_dataset_extract + + +def export_all_datasets_exceptions(): + num_rows = 100 + dataset_ids = list_datasets(with_community_datasets=True) + + results = [] + + for dataset_id in tqdm(dataset_ids[0:2]): + + success = False + try: + extract = get_dataset_extract(dataset_id, num_rows) + exception = "" + if len(extract) != num_rows: + raise f"{len(extract)} rows instead of {num_rows}" + success = True + message = "" + except Exception as err: + exception = str(type(err).__name__) + message = str(err) + results.append( + { + "dataset_id": dataset_id, + "success": success, + "exception": exception, + "message": message, + } + ) + + time_string = time.strftime("%Y%m%d-%H%M%S") + filename = f"/tmp/datasets-{time_string}.json" + with open(filename, "w") as outfile: + json.dump(results, outfile, indent=2) + print(f"report has been written at {filename}") + + +if __name__ == "__main__": + export_all_datasets_exceptions()
20e10053a5755c514915dc3d68b7179a429e9439
Sylvain Lesage
2021-07-28T08:27:25
test: 💍 add test on unknown split
diff --git a/tests/test_main.py b/tests/test_main.py index 4baaa624..116b35bc 100644 --- a/tests/test_main.py +++ b/tests/test_main.py @@ -1,0 +2 @@ import pytest +from datasets import list_datasets @@ -17,0 +19,6 @@ def test_extract_num_rows(): +def test_extract_unknown_split(): + # "aeslc" dataset has no "train" split, while "train" is the hardcoded split used to download + extract = get_dataset_extract("aeslc", 100) + assert len(extract) == 0 + + @@ -20 +27 @@ def test_extract_unknown_model(): - extract = get_dataset_extract("doesnotexist", 100) + get_dataset_extract("doesnotexist", 100) @@ -25 +32 @@ def test_extract_subset_not_implemented(): - extract = get_dataset_extract("glue", 100) + get_dataset_extract("glue", 100)
2ec0321b4627e918789d26eb6e827d35d6923822
Sylvain Lesage
2021-07-27T14:29:26
fix: 🐛 fix variables name: dataset_id, not model_id!
diff --git a/src/datasets_preview_backend/main.py b/src/datasets_preview_backend/main.py index 3815a8e0..f38087af 100644 --- a/src/datasets_preview_backend/main.py +++ b/src/datasets_preview_backend/main.py @@ -34,3 +34,3 @@ async def healthcheck(request: Request): -def get_dataset_extract(model_id: str, num_rows: int): - # TODO: manage splits and submodels - logging.debug(f"Asked for {num_rows} first rows of model {model_id}") +def get_dataset_extract(dataset_id: str, num_rows: int): + # TODO: manage splits and configs + logging.debug(f"Asked for {num_rows} first rows of dataset {dataset_id}") @@ -38 +38 @@ def get_dataset_extract(model_id: str, num_rows: int): - dataset = load_dataset(model_id, split="train", streaming=True) + dataset = load_dataset(dataset_id, split="train", streaming=True) @@ -53 +53 @@ async def extract(request: Request): - model_id: str = request.path_params["model_id"] + dataset_id: str = request.path_params["dataset_id"] @@ -59 +59 @@ async def extract(request: Request): - return JSONResponse(get_dataset_extract(model_id, num_rows)) + return JSONResponse(get_dataset_extract(dataset_id, num_rows)) @@ -61 +61,2 @@ async def extract(request: Request): - return PlainTextResponse("Model data could not be found", status_code=404) + return PlainTextResponse("Dataset not found", status_code=404) + # other exceptions will generate a 500 response @@ -68 +69 @@ def start(): - Route("/{model_id:path}/extract", endpoint=extract), + Route("/{dataset_id:path}/extract", endpoint=extract),
b1d8380d60626c4ea5f04d58a6a2518d24c706b1
Sylvain Lesage
2021-07-27T11:55:30
feat: 🎸 return a 404 error if the model could not be found
diff --git a/src/datasets_preview_backend/main.py b/src/datasets_preview_backend/main.py index fb478595..3815a8e0 100644 --- a/src/datasets_preview_backend/main.py +++ b/src/datasets_preview_backend/main.py @@ -37,5 +37,2 @@ def get_dataset_extract(model_id: str, num_rows: int): - try: - dataset = load_dataset(model_id, split="train", streaming=True) - except: - logging.warning(f"Dataset could not be loaded.") - return [] + + dataset = load_dataset(model_id, split="train", streaming=True) @@ -61 +58,4 @@ async def extract(request: Request): - return JSONResponse(get_dataset_extract(model_id, num_rows)) + try: + return JSONResponse(get_dataset_extract(model_id, num_rows)) + except FileNotFoundError as e: + return PlainTextResponse("Model data could not be found", status_code=404) diff --git a/tests/test_main.py b/tests/test_main.py index 0da7c372..4baaa624 100644 --- a/tests/test_main.py +++ b/tests/test_main.py @@ -0,0 +1,2 @@ +import pytest + @@ -9,0 +12,11 @@ def test_extract_ok(): +def test_extract_num_rows(): + extract = get_dataset_extract("acronym_identification", 20) + assert len(extract) == 20 + assert extract[0]["tokens"][0] == "What" + + +def test_extract_unknown_model(): + with pytest.raises(FileNotFoundError): + extract = get_dataset_extract("doesnotexist", 100) + + @@ -11,2 +24,2 @@ def test_extract_subset_not_implemented(): - extract = get_dataset_extract("glue", 100) - assert len(extract) == 0 + with pytest.raises(ValueError, match="Config name is missing..*"): + extract = get_dataset_extract("glue", 100)
0540ae53caccc0c0e3819cb0691a934227aa170d
Sylvain Lesage
2021-07-27T11:35:25
chore: 🤖 use logging functions
diff --git a/src/datasets_preview_backend/main.py b/src/datasets_preview_backend/main.py index fc37b884..fb478595 100644 --- a/src/datasets_preview_backend/main.py +++ b/src/datasets_preview_backend/main.py @@ -0,0 +1 @@ +import logging @@ -35 +36 @@ def get_dataset_extract(model_id: str, num_rows: int): - print(f"Asked for {num_rows} first rows of model {model_id}") + logging.debug(f"Asked for {num_rows} first rows of model {model_id}") @@ -39 +40 @@ def get_dataset_extract(model_id: str, num_rows: int): - print(f"WARN Dataset could not be loaded.") + logging.warning(f"Dataset could not be loaded.") @@ -42 +43 @@ def get_dataset_extract(model_id: str, num_rows: int): - print(f"Dataset loaded") + logging.debug(f"Dataset loaded") @@ -47 +48,3 @@ def get_dataset_extract(model_id: str, num_rows: int): - print(f"WARN could not read all the required rows ({len(rows)} / {num_rows})") + logging.warning( + f"could not read all the required rows ({len(rows)} / {num_rows})" + )
19d0d3416c8e7d5da61a4f19c2f8bc805d389bc1
Sylvain Lesage
2021-07-27T11:29:25
test: 💍 add two tests on get_dataset_extract
diff --git a/Makefile b/Makefile index 2fdd0a84..52b88f2b 100644 --- a/Makefile +++ b/Makefile @@ -8 +8 @@ test: - poetry run pytest + poetry run python -m pytest diff --git a/src/datasets_preview_backend/main.py b/src/datasets_preview_backend/main.py index 2a2df864..fc37b884 100644 --- a/src/datasets_preview_backend/main.py +++ b/src/datasets_preview_backend/main.py @@ -39 +39 @@ def get_dataset_extract(model_id: str, num_rows: int): - print(f"Dataset could not be loaded.") + print(f"WARN Dataset could not be loaded.") diff --git a/tests/test_main.py b/tests/test_main.py index 1030a2e3..0da7c372 100644 --- a/tests/test_main.py +++ b/tests/test_main.py @@ -1,2 +1 @@ -def func(x): - return x + 1 +from datasets_preview_backend.main import get_dataset_extract @@ -5,2 +4,9 @@ def func(x): -def test_answer(): - assert func(3) == 4 +def test_extract_ok(): + extract = get_dataset_extract("acronym_identification", 100) + assert len(extract) == 100 + assert extract[0]["tokens"][0] == "What" + + +def test_extract_subset_not_implemented(): + extract = get_dataset_extract("glue", 100) + assert len(extract) == 0
89fc8fb8687bb17cc49bc678924d022038dbdf1e
Sylvain Lesage
2021-07-27T11:15:33
test: 💍 add pytest first dummy test
diff --git a/Makefile b/Makefile index e808d478..2fdd0a84 100644 --- a/Makefile +++ b/Makefile @@ -6,0 +7,3 @@ run: +test: + poetry run pytest + diff --git a/poetry.lock b/poetry.lock index 9962516f..97716d17 100644 --- a/poetry.lock +++ b/poetry.lock @@ -71,0 +72,8 @@ python-versions = ">=3.5.3" +[[package]] +name = "atomicwrites" +version = "1.4.0" +description = "Atomic file writes." +category = "main" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" + @@ -179 +187 @@ benchmarks = ["numpy (==1.18.5)", "tensorflow (==2.3.0)", "torch (==1.6.0)", "tr -dev = ["absl-py", "pytest", "pytest-xdist", "aiohttp", "apache-beam (>=2.26.0)", "elasticsearch", "aiobotocore (==1.2.2)", "boto3 (==1.16.43)", "botocore (==1.19.52)", "faiss-cpu", "fsspec", "moto[server,s3] (==2.0.4)", "rarfile (>=4.0)", "s3fs", "tensorflow (>=2.3)", "torch", "transformers", "bs4", "conllu", "langdetect", "lxml", "mwparserfromhell", "nltk", "openpyxl", "py7zr", "tldextract", "zstandard", "bert-score (>=0.3.6)", "rouge-score", "sacrebleu", "scipy", "seqeval", "scikit-learn", "jiwer", "sentencepiece", "toml (>=0.10.1)", "requests-file (>=1.5.1)", "tldextract (>=3.1.0)", "texttable (>=1.6.3)", "Werkzeug (>=1.0.1)", "six (>=1.15.0,<1.16.0)", "wget (>=3.2)", "pytorch-nlp (==0.5.0)", "pytorch-lightning", "fastBPE (==0.1.0)", "fairseq", "black (==21.4b0)", "flake8 (==3.7.9)", "isort", "pyyaml (>=5.3.1)", "importlib-resources"] +dev = ["absl-py", "pytest", "pytest-xdist", "aiohttp", "apache-beam (>=2.26.0)", "elasticsearch", "aiobotocore (==1.2.2)", "boto3 (==1.16.43)", "botocore (==1.19.52)", "faiss-cpu", "fsspec", "moto[s3,server] (==2.0.4)", "rarfile (>=4.0)", "s3fs", "tensorflow (>=2.3)", "torch", "transformers", "bs4", "conllu", "langdetect", "lxml", "mwparserfromhell", "nltk", "openpyxl", "py7zr", "tldextract", "zstandard", "bert-score (>=0.3.6)", "rouge-score", "sacrebleu", "scipy", "seqeval", "scikit-learn", "jiwer", "sentencepiece", "toml (>=0.10.1)", "requests-file (>=1.5.1)", "tldextract (>=3.1.0)", "texttable (>=1.6.3)", "Werkzeug (>=1.0.1)", "six (>=1.15.0,<1.16.0)", "wget (>=3.2)", "pytorch-nlp (==0.5.0)", "pytorch-lightning", "fastBPE (==0.1.0)", "fairseq", "black (==21.4b0)", "flake8 (==3.7.9)", "isort", "pyyaml (>=5.3.1)", "importlib-resources"] @@ -186 +194 @@ tensorflow_gpu = ["tensorflow-gpu (>=2.2.0)"] -tests = ["absl-py", "pytest", "pytest-xdist", "aiohttp", "apache-beam (>=2.26.0)", "elasticsearch", "aiobotocore (==1.2.2)", "boto3 (==1.16.43)", "botocore (==1.19.52)", "faiss-cpu", "fsspec", "moto[server,s3] (==2.0.4)", "rarfile (>=4.0)", "s3fs", "tensorflow (>=2.3)", "torch", "transformers", "bs4", "conllu", "langdetect", "lxml", "mwparserfromhell", "nltk", "openpyxl", "py7zr", "tldextract", "zstandard", "bert-score (>=0.3.6)", "rouge-score", "sacrebleu", "scipy", "seqeval", "scikit-learn", "jiwer", "sentencepiece", "toml (>=0.10.1)", "requests-file (>=1.5.1)", "tldextract (>=3.1.0)", "texttable (>=1.6.3)", "Werkzeug (>=1.0.1)", "six (>=1.15.0,<1.16.0)", "wget (>=3.2)", "pytorch-nlp (==0.5.0)", "pytorch-lightning", "fastBPE (==0.1.0)", "fairseq", "importlib-resources"] +tests = ["absl-py", "pytest", "pytest-xdist", "aiohttp", "apache-beam (>=2.26.0)", "elasticsearch", "aiobotocore (==1.2.2)", "boto3 (==1.16.43)", "botocore (==1.19.52)", "faiss-cpu", "fsspec", "moto[s3,server] (==2.0.4)", "rarfile (>=4.0)", "s3fs", "tensorflow (>=2.3)", "torch", "transformers", "bs4", "conllu", "langdetect", "lxml", "mwparserfromhell", "nltk", "openpyxl", "py7zr", "tldextract", "zstandard", "bert-score (>=0.3.6)", "rouge-score", "sacrebleu", "scipy", "seqeval", "scikit-learn", "jiwer", "sentencepiece", "toml (>=0.10.1)", "requests-file (>=1.5.1)", "tldextract (>=3.1.0)", "texttable (>=1.6.3)", "Werkzeug (>=1.0.1)", "six (>=1.15.0,<1.16.0)", "wget (>=3.2)", "pytorch-nlp (==0.5.0)", "pytorch-lightning", "fastBPE (==0.1.0)", "fairseq", "importlib-resources"] @@ -270,0 +279,8 @@ python-versions = ">=3.5" +[[package]] +name = "iniconfig" +version = "1.1.1" +description = "iniconfig: brain-dead simple config-ini parsing" +category = "main" +optional = false +python-versions = "*" + @@ -340,0 +357,19 @@ python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7" +[[package]] +name = "pluggy" +version = "0.13.1" +description = "plugin and hook calling mechanisms for python" +category = "main" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" + +[package.extras] +dev = ["pre-commit", "tox"] + +[[package]] +name = "py" +version = "1.10.0" +description = "library with cross-python path, ini-parsing, io, code, log facilities" +category = "main" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" + @@ -359,0 +395,21 @@ python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*" +[[package]] +name = "pytest" +version = "6.2.4" +description = "pytest: simple powerful testing with Python" +category = "main" +optional = false +python-versions = ">=3.6" + +[package.dependencies] +atomicwrites = {version = ">=1.0", markers = "sys_platform == \"win32\""} +attrs = ">=19.2.0" +colorama = {version = "*", markers = "sys_platform == \"win32\""} +iniconfig = "*" +packaging = "*" +pluggy = ">=0.12,<1.0.0a1" +py = ">=1.8.2" +toml = "*" + +[package.extras] +testing = ["argcomplete", "hypothesis (>=3.56)", "mock", "nose", "requests", "xmlschema"] + @@ -442,0 +499,8 @@ full = ["itsdangerous", "jinja2", "python-multipart", "pyyaml", "requests", "gra +[[package]] +name = "toml" +version = "0.10.2" +description = "Python Library for Tom's Obvious, Minimal Language" +category = "main" +optional = false +python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*" + @@ -542 +606 @@ python-versions = "^3.8" -content-hash = "09367b69976c42be1e0e288c128e517b37bad5cd596824332f4dc371ee26d21d" +content-hash = "464a59b79e0ffae394c5b77d4bc3d871158d4fb0b6ad8e7c2054f64d0c3c2321" @@ -603,0 +668,4 @@ async-timeout = [ +atomicwrites = [ + {file = "atomicwrites-1.4.0-py2.py3-none-any.whl", hash = "sha256:6d1784dea7c0c8d4a5172b6c620f40b6e4cbfdf96d783691f2e1302a7b88e197"}, + {file = "atomicwrites-1.4.0.tar.gz", hash = "sha256:ae70396ad1a434f9c7046fd2dd196fc04b12f9e91ffb859164193be8b6168a7a"}, +] @@ -659,0 +728,4 @@ idna = [ +iniconfig = [ + {file = "iniconfig-1.1.1-py2.py3-none-any.whl", hash = "sha256:011e24c64b7f47f6ebd835bb12a743f2fbe9a26d4cecaa7f53bc4f35ee9da8b3"}, + {file = "iniconfig-1.1.1.tar.gz", hash = "sha256:bc3af051d7d14b2ee5ef9969666def0cd1a000e121eaea580d4a313df4b37f32"}, +] @@ -776,0 +849,8 @@ pathspec = [ +pluggy = [ + {file = "pluggy-0.13.1-py2.py3-none-any.whl", hash = "sha256:966c145cd83c96502c3c3868f50408687b38434af77734af1e9ca461a4081d2d"}, + {file = "pluggy-0.13.1.tar.gz", hash = "sha256:15b2acde666561e1298d71b523007ed7364de07029219b604cf808bfa1c765b0"}, +] +py = [ + {file = "py-1.10.0-py2.py3-none-any.whl", hash = "sha256:3b80836aa6d1feeaa108e046da6423ab8f6ceda6468545ae8d02d9d58d18818a"}, + {file = "py-1.10.0.tar.gz", hash = "sha256:21b81bda15b66ef5e1a777a21c4dcd9c20ad3efd0b3f817e7a809035269e1bd3"}, +] @@ -807,0 +888,4 @@ pyparsing = [ +pytest = [ + {file = "pytest-6.2.4-py3-none-any.whl", hash = "sha256:91ef2131a9bd6be8f76f1f08eac5c5317221d6ad1e143ae03894b862e8976890"}, + {file = "pytest-6.2.4.tar.gz", hash = "sha256:50bcad0a0b9c5a72c8e4e7c9855a3ad496ca6a881a3641b4260605450772c54b"}, +] @@ -905,0 +990,4 @@ starlette = [ +toml = [ + {file = "toml-0.10.2-py2.py3-none-any.whl", hash = "sha256:806143ae5bfb6a3c6e736a764057db0e6a0e05e338b5630894a5f779cabb4f9b"}, + {file = "toml-0.10.2.tar.gz", hash = "sha256:b3bda1d108d5dd99f4a20d24d9c348e91c4db7ab1b749200bded2f839ccbe68f"}, +] diff --git a/pyproject.toml b/pyproject.toml index 3395aa2a..0aab884b 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -11,0 +12 @@ uvicorn = "^0.14.0" +pytest = "^6.2.4" diff --git a/tests/test_main.py b/tests/test_main.py new file mode 100644 index 00000000..1030a2e3 --- /dev/null +++ b/tests/test_main.py @@ -0,0 +1,6 @@ +def func(x): + return x + 1 + + +def test_answer(): + assert func(3) == 4
296d49c8eb0a2cc7a77da40007e2e8f8f4b2ed12
Sylvain Lesage
2021-07-27T11:09:46
chore: 🤖 unversion local poetry configuration
diff --git a/.gitignore b/.gitignore index 038cb807..e2cdb79d 100644 --- a/.gitignore +++ b/.gitignore @@ -7,0 +8 @@ +# local configurations @@ -8,0 +10 @@ +poetry.toml diff --git a/poetry.toml b/poetry.toml deleted file mode 100644 index ab1033bd..00000000 --- a/poetry.toml +++ /dev/null @@ -1,2 +0,0 @@ -[virtualenvs] -in-project = true
18972f288407496a60c94e16b0bb772ae6e05f15
Sylvain Lesage
2021-07-27T11:08:58
chore: 🤖 put the code inside src/
diff --git a/Makefile b/Makefile index da691fdd..e808d478 100644 --- a/Makefile +++ b/Makefile @@ -5 +5 @@ run: - poetry run python datasets_preview_backend/main.py + poetry run python src/datasets_preview_backend/main.py @@ -8 +8 @@ watch: - poetry run watchmedo auto-restart -d datasets_preview_backend -p "*.py" -R python datasets_preview_backend/main.py + poetry run watchmedo auto-restart -d src/datasets_preview_backend -p "*.py" -R python src/datasets_preview_backend/main.py diff --git a/datasets_preview_backend/main.py b/src/datasets_preview_backend/main.py similarity index 100% rename from datasets_preview_backend/main.py rename to src/datasets_preview_backend/main.py
be73bec406c5f4427815f1a373e38489e51273e8
Sylvain Lesage
2021-07-27T10:49:57
feat: 🎸 return the dataset extract as JSON
diff --git a/datasets_preview_backend/main.py b/datasets_preview_backend/main.py index 6023cb51..2a2df864 100644 --- a/datasets_preview_backend/main.py +++ b/datasets_preview_backend/main.py @@ -5 +5 @@ from starlette.requests import Request -from starlette.responses import PlainTextResponse +from starlette.responses import PlainTextResponse, JSONResponse @@ -8,0 +9,2 @@ import uvicorn +from datasets import load_dataset + @@ -30,0 +33,19 @@ async def healthcheck(request: Request): +def get_dataset_extract(model_id: str, num_rows: int): + # TODO: manage splits and submodels + print(f"Asked for {num_rows} first rows of model {model_id}") + try: + dataset = load_dataset(model_id, split="train", streaming=True) + except: + print(f"Dataset could not be loaded.") + return [] + + print(f"Dataset loaded") + + rows = list(dataset.take(num_rows)) + + if len(rows) != num_rows: + print(f"WARN could not read all the required rows ({len(rows)} / {num_rows})") + + return rows + + @@ -33 +54,3 @@ async def extract(request: Request): - rows = get_int_value(d=request.query_params, key="rows", default=EXTRACT_ROWS_LIMIT) + num_rows = get_int_value( + d=request.query_params, key="rows", default=EXTRACT_ROWS_LIMIT + ) @@ -35 +58 @@ async def extract(request: Request): - return PlainTextResponse(model_id + "-" + str(rows)) + return JSONResponse(get_dataset_extract(model_id, num_rows)) diff --git a/poetry.lock b/poetry.lock index 217bd8c9..9962516f 100644 --- a/poetry.lock +++ b/poetry.lock @@ -0,0 +1,19 @@ +[[package]] +name = "aiohttp" +version = "3.7.4.post0" +description = "Async http client/server framework (asyncio)" +category = "main" +optional = false +python-versions = ">=3.6" + +[package.dependencies] +async-timeout = ">=3.0,<4.0" +attrs = ">=17.3.0" +chardet = ">=2.0,<5.0" +multidict = ">=4.5,<7.0" +typing-extensions = ">=3.6.5" +yarl = ">=1.0,<2.0" + +[package.extras] +speedups = ["aiodns", "brotlipy", "cchardet"] + @@ -44,0 +64,22 @@ tests = ["pytest", "pytest-asyncio", "mypy (>=0.800)"] +[[package]] +name = "async-timeout" +version = "3.0.1" +description = "Timeout context manager for asyncio programs" +category = "main" +optional = false +python-versions = ">=3.5.3" + +[[package]] +name = "attrs" +version = "21.2.0" +description = "Classes Without Boilerplate" +category = "main" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" + +[package.extras] +dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "furo", "sphinx", "sphinx-notfound-page", "pre-commit"] +docs = ["furo", "sphinx", "zope.interface", "sphinx-notfound-page"] +tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface"] +tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins"] + @@ -74,0 +116,8 @@ python-versions = "*" +[[package]] +name = "chardet" +version = "4.0.0" +description = "Universal encoding detector for Python 2 and 3" +category = "main" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" + @@ -113,0 +163 @@ python-versions = "*" +aiohttp = {version = "*", optional = true, markers = "extra == \"streaming\""} @@ -129 +179 @@ benchmarks = ["numpy (==1.18.5)", "tensorflow (==2.3.0)", "torch (==1.6.0)", "tr -dev = ["absl-py", "pytest", "pytest-xdist", "aiohttp", "apache-beam (>=2.26.0)", "elasticsearch", "aiobotocore (==1.2.2)", "boto3 (==1.16.43)", "botocore (==1.19.52)", "faiss-cpu", "fsspec", "moto[s3,server] (==2.0.4)", "rarfile (>=4.0)", "s3fs", "tensorflow (>=2.3)", "torch", "transformers", "bs4", "conllu", "langdetect", "lxml", "mwparserfromhell", "nltk", "openpyxl", "py7zr", "tldextract", "zstandard", "bert-score (>=0.3.6)", "rouge-score", "sacrebleu", "scipy", "seqeval", "scikit-learn", "jiwer", "sentencepiece", "toml (>=0.10.1)", "requests-file (>=1.5.1)", "tldextract (>=3.1.0)", "texttable (>=1.6.3)", "Werkzeug (>=1.0.1)", "six (>=1.15.0,<1.16.0)", "wget (>=3.2)", "pytorch-nlp (==0.5.0)", "pytorch-lightning", "fastBPE (==0.1.0)", "fairseq", "black (==21.4b0)", "flake8 (==3.7.9)", "isort", "pyyaml (>=5.3.1)", "importlib-resources"] +dev = ["absl-py", "pytest", "pytest-xdist", "aiohttp", "apache-beam (>=2.26.0)", "elasticsearch", "aiobotocore (==1.2.2)", "boto3 (==1.16.43)", "botocore (==1.19.52)", "faiss-cpu", "fsspec", "moto[server,s3] (==2.0.4)", "rarfile (>=4.0)", "s3fs", "tensorflow (>=2.3)", "torch", "transformers", "bs4", "conllu", "langdetect", "lxml", "mwparserfromhell", "nltk", "openpyxl", "py7zr", "tldextract", "zstandard", "bert-score (>=0.3.6)", "rouge-score", "sacrebleu", "scipy", "seqeval", "scikit-learn", "jiwer", "sentencepiece", "toml (>=0.10.1)", "requests-file (>=1.5.1)", "tldextract (>=3.1.0)", "texttable (>=1.6.3)", "Werkzeug (>=1.0.1)", "six (>=1.15.0,<1.16.0)", "wget (>=3.2)", "pytorch-nlp (==0.5.0)", "pytorch-lightning", "fastBPE (==0.1.0)", "fairseq", "black (==21.4b0)", "flake8 (==3.7.9)", "isort", "pyyaml (>=5.3.1)", "importlib-resources"] @@ -136 +186 @@ tensorflow_gpu = ["tensorflow-gpu (>=2.2.0)"] -tests = ["absl-py", "pytest", "pytest-xdist", "aiohttp", "apache-beam (>=2.26.0)", "elasticsearch", "aiobotocore (==1.2.2)", "boto3 (==1.16.43)", "botocore (==1.19.52)", "faiss-cpu", "fsspec", "moto[s3,server] (==2.0.4)", "rarfile (>=4.0)", "s3fs", "tensorflow (>=2.3)", "torch", "transformers", "bs4", "conllu", "langdetect", "lxml", "mwparserfromhell", "nltk", "openpyxl", "py7zr", "tldextract", "zstandard", "bert-score (>=0.3.6)", "rouge-score", "sacrebleu", "scipy", "seqeval", "scikit-learn", "jiwer", "sentencepiece", "toml (>=0.10.1)", "requests-file (>=1.5.1)", "tldextract (>=3.1.0)", "texttable (>=1.6.3)", "Werkzeug (>=1.0.1)", "six (>=1.15.0,<1.16.0)", "wget (>=3.2)", "pytorch-nlp (==0.5.0)", "pytorch-lightning", "fastBPE (==0.1.0)", "fairseq", "importlib-resources"] +tests = ["absl-py", "pytest", "pytest-xdist", "aiohttp", "apache-beam (>=2.26.0)", "elasticsearch", "aiobotocore (==1.2.2)", "boto3 (==1.16.43)", "botocore (==1.19.52)", "faiss-cpu", "fsspec", "moto[server,s3] (==2.0.4)", "rarfile (>=4.0)", "s3fs", "tensorflow (>=2.3)", "torch", "transformers", "bs4", "conllu", "langdetect", "lxml", "mwparserfromhell", "nltk", "openpyxl", "py7zr", "tldextract", "zstandard", "bert-score (>=0.3.6)", "rouge-score", "sacrebleu", "scipy", "seqeval", "scikit-learn", "jiwer", "sentencepiece", "toml (>=0.10.1)", "requests-file (>=1.5.1)", "tldextract (>=3.1.0)", "texttable (>=1.6.3)", "Werkzeug (>=1.0.1)", "six (>=1.15.0,<1.16.0)", "wget (>=3.2)", "pytorch-nlp (==0.5.0)", "pytorch-lightning", "fastBPE (==0.1.0)", "fairseq", "importlib-resources"] @@ -220,0 +271,8 @@ python-versions = ">=3.5" +[[package]] +name = "multidict" +version = "5.1.0" +description = "multidict implementation" +category = "main" +optional = false +python-versions = ">=3.6" + @@ -468,0 +527,12 @@ python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*" +[[package]] +name = "yarl" +version = "1.6.3" +description = "Yet another URL library" +category = "main" +optional = false +python-versions = ">=3.6" + +[package.dependencies] +idna = ">=2.0" +multidict = ">=4.0" + @@ -472 +542 @@ python-versions = "^3.8" -content-hash = "4fc8135a2125613a91182281b87f952a90180eb31ecb913e49ec1fede4763afa" +content-hash = "09367b69976c42be1e0e288c128e517b37bad5cd596824332f4dc371ee26d21d" @@ -474,0 +545,39 @@ content-hash = "4fc8135a2125613a91182281b87f952a90180eb31ecb913e49ec1fede4763afa +aiohttp = [ + {file = "aiohttp-3.7.4.post0-cp36-cp36m-macosx_10_14_x86_64.whl", hash = "sha256:3cf75f7cdc2397ed4442594b935a11ed5569961333d49b7539ea741be2cc79d5"}, + {file = "aiohttp-3.7.4.post0-cp36-cp36m-manylinux1_i686.whl", hash = "sha256:4b302b45040890cea949ad092479e01ba25911a15e648429c7c5aae9650c67a8"}, + {file = "aiohttp-3.7.4.post0-cp36-cp36m-manylinux2014_aarch64.whl", hash = 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100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -9 +9 @@ python = "^3.8" -datasets = "^1.10.2" +datasets = {extras = ["streaming"], version = "^1.10.2"}
9473e431bf6d5e9ba8bd42497bf95c71af026185
Sylvain Lesage
2021-07-26T14:10:19
feat: 🎸 load envvars, and add basis for extract/ route
diff --git a/datasets_preview_backend/main.py b/datasets_preview_backend/main.py index ce89814a..6023cb51 100644 --- a/datasets_preview_backend/main.py +++ b/datasets_preview_backend/main.py @@ -9 +9,2 @@ import uvicorn -PORT = 8000 +DEFAULT_PORT = 8000 +DEFAULT_EXTRACT_ROWS_LIMIT = 100 @@ -12 +13,15 @@ PORT = 8000 -def healthcheck(request: Request): +def get_int_value(d, key, default): + try: + value = int(d.get(key)) + except TypeError: + value = default + return value + + +PORT = get_int_value(d=os.environ, key="DPB_PORT", default=DEFAULT_PORT) +EXTRACT_ROWS_LIMIT = get_int_value( + d=os.environ, key="DPB_EXTRACT_ROWS_LIMIT", default=DEFAULT_EXTRACT_ROWS_LIMIT +) + + +async def healthcheck(request: Request): @@ -15,0 +31,7 @@ def healthcheck(request: Request): +async def extract(request: Request): + model_id: str = request.path_params["model_id"] + rows = get_int_value(d=request.query_params, key="rows", default=EXTRACT_ROWS_LIMIT) + + return PlainTextResponse(model_id + "-" + str(rows)) + + @@ -19,0 +42 @@ def start(): + Route("/{model_id:path}/extract", endpoint=extract), @@ -23,2 +46 @@ def start(): - port = os.environ.get("TBL_PORT", PORT) - uvicorn.run(app, host="0.0.0.0", port=port) + uvicorn.run(app, host="0.0.0.0", port=PORT)
96cf611122c6b7ad9dd151439fb2724e3c44b49d
Sylvain Lesage
2021-07-26T11:28:07
chore: 🤖 use make for install/run/watch + add watch mode
diff --git a/Makefile b/Makefile new file mode 100644 index 00000000..da691fdd --- /dev/null +++ b/Makefile @@ -0,0 +1,8 @@ +install: + poetry install + +run: + poetry run python datasets_preview_backend/main.py + +watch: + poetry run watchmedo auto-restart -d datasets_preview_backend -p "*.py" -R python datasets_preview_backend/main.py diff --git a/README.md b/README.md index f5a5101b..9d4bd617 100644 --- a/README.md +++ b/README.md @@ -9,0 +10,2 @@ The URL schema is `https://huggingface.co/datasets-preview/:datasetId/extract?ro +- Poetry +- make @@ -16,4 +18 @@ cd datasets-preview-backend -python -m venv .venv -source .venv/bin/activate -pip install . -deactivate +make install @@ -22,2 +20,0 @@ deactivate -See [INSTALL.md](./INSTALL.md) for details on how it has been deployed. - @@ -28,2 +25 @@ cd datasets-preview-backend -source .venv/bin/activate -python datasets-preview-backend/main.py +make run @@ -35,0 +32,7 @@ Set environment variables to configure the following aspects: + +To restart the application on file changes while developing, run: + +```bash +cd datasets-preview-backend +make watch +``` diff --git a/poetry.lock b/poetry.lock index 9be04f83..217bd8c9 100644 --- a/poetry.lock +++ b/poetry.lock @@ -25,0 +26,8 @@ python-versions = "*" +[[package]] +name = "argh" +version = "0.26.2" +description = "An unobtrusive argparse wrapper with natural syntax" +category = "dev" +optional = false +python-versions = "*" + @@ -312,0 +321,8 @@ python-versions = "*" +[[package]] +name = "pyyaml" +version = "5.4.1" +description = "YAML parser and emitter for Python" +category = "dev" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*" + @@ -429,0 +446,15 @@ standard = ["websockets (>=9.1)", "httptools (>=0.2.0,<0.3.0)", "watchgod (>=0.6 +[[package]] +name = "watchdog" +version = "2.1.3" +description = "Filesystem events monitoring" +category = "dev" +optional = false +python-versions = ">=3.6" + +[package.dependencies] +argh 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"sha256:e5236a8e8602ab6db4b873664c2d356c365ab3cac96fbdec4970ad616415dd45"}, +] diff --git a/pyproject.toml b/pyproject.toml index 591f73a2..c13095e1 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -14,0 +15 @@ black = "^21.7b0" +watchdog = {extras = ["watchmedo"], version = "^2.1.3"}
d5fc7cba68fc2f1ab1478748ce07830716920f74
Sylvain Lesage
2021-07-26T10:57:56
feat: 🎸 create app with starlette, create healthcheck endpoint
diff --git a/datasets_preview_backend/main.py b/datasets_preview_backend/main.py new file mode 100644 index 00000000..ce89814a --- /dev/null +++ b/datasets_preview_backend/main.py @@ -0,0 +1,28 @@ +import os + +from starlette.applications import Starlette +from starlette.requests import Request +from starlette.responses import PlainTextResponse +from starlette.routing import Route +import uvicorn + +PORT = 8000 + + +def healthcheck(request: Request): + return PlainTextResponse("ok") + + +def start(): + app = Starlette( + routes=[ + Route("/healthcheck", endpoint=healthcheck), + ] + ) + + port = os.environ.get("TBL_PORT", PORT) + uvicorn.run(app, host="0.0.0.0", port=port) + + +if __name__ == "__main__": + start()
ae6949750c03106cf5fd1bb43afeb1362633d48e
Sylvain Lesage
2021-07-26T10:42:39
chore: 🤖 install poetry venv in .venv
diff --git a/poetry.toml b/poetry.toml new file mode 100644 index 00000000..ab1033bd --- /dev/null +++ b/poetry.toml @@ -0,0 +1,2 @@ +[virtualenvs] +in-project = true
29adb0cce3d4363362c9bbab45c0b5d056e24193
Sylvain Lesage
2021-07-26T09:52:55
chore: 🤖 create project
diff --git a/.gitignore b/.gitignore new file mode 100644 index 00000000..038cb807 --- /dev/null +++ b/.gitignore @@ -0,0 +1,8 @@ +# MacOS +.DS_Store + +# Python +*.pyc +.venv/ + +.vscode/ diff --git a/README.md b/README.md new file mode 100644 index 00000000..f5a5101b --- /dev/null +++ b/README.md @@ -0,0 +1,35 @@ +# Datasets preview backend + +> API to extract rows of 🤗 datasets + +The URL schema is `https://huggingface.co/datasets-preview/:datasetId/extract?rows=100`. For example https://huggingface.co/datasets-preview/acronym_identification/extract?rows=10 will return a JSON file with the list of the first 10 rows of the first available dataset split in https://huggingface.co/datasets/acronym_identification. + +## Requirements + +- Python 3.8+ + +## Install + +```bash +git clone [email protected]:huggingface/datasets-preview-backend.git +cd datasets-preview-backend +python -m venv .venv +source .venv/bin/activate +pip install . +deactivate +``` + +See [INSTALL.md](./INSTALL.md) for details on how it has been deployed. + +## Run + +```bash +cd datasets-preview-backend +source .venv/bin/activate +python datasets-preview-backend/main.py +``` + +Set environment variables to configure the following aspects: + +- `DPB_EXTRACT_ROWS_LIMIT`: maximum number of rows in the extract. Defaults to `100`. +- `DPB_PORT`: the port used by the app diff --git a/poetry.lock b/poetry.lock new file mode 100644 index 00000000..9be04f83 --- /dev/null +++ b/poetry.lock @@ -0,0 +1,766 @@ +[[package]] +name = "anyio" +version = "3.3.0" +description = "High level compatibility layer for multiple asynchronous event loop implementations" +category = "main" +optional = false +python-versions = ">=3.6.2" + +[package.dependencies] +idna = ">=2.8" +sniffio = ">=1.1" + +[package.extras] +doc = ["sphinx-rtd-theme", "sphinx-autodoc-typehints (>=1.2.0)"] +test = ["coverage[toml] (>=4.5)", "hypothesis (>=4.0)", "pytest (>=6.0)", "pytest-mock (>=3.6.1)", "trustme", "uvloop (<0.15)", "mock (>=4)", "uvloop (>=0.15)"] +trio = ["trio (>=0.16)"] + +[[package]] +name = "appdirs" +version = "1.4.4" +description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"." +category = "dev" +optional = false +python-versions = "*" + +[[package]] +name = "asgiref" +version = "3.4.1" +description = "ASGI specs, helper code, and adapters" +category = "main" +optional = false +python-versions = ">=3.6" + +[package.extras] +tests = ["pytest", "pytest-asyncio", "mypy (>=0.800)"] + +[[package]] +name = "black" +version = "21.7b0" +description = "The uncompromising code formatter." +category = "dev" +optional = false +python-versions = ">=3.6.2" + +[package.dependencies] +appdirs = "*" +click = ">=7.1.2" +mypy-extensions = ">=0.4.3" +pathspec = ">=0.8.1,<1" +regex = ">=2020.1.8" +tomli = ">=0.2.6,<2.0.0" + +[package.extras] +colorama = ["colorama (>=0.4.3)"] +d = ["aiohttp (>=3.6.0)", "aiohttp-cors (>=0.4.0)"] +python2 = ["typed-ast (>=1.4.2)"] +uvloop = ["uvloop (>=0.15.2)"] + +[[package]] +name = "certifi" +version = "2021.5.30" +description = "Python package for providing Mozilla's CA Bundle." +category = "main" +optional = false +python-versions = "*" + +[[package]] +name = "charset-normalizer" +version = "2.0.3" +description = "The Real First Universal Charset Detector. 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