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README.md
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- drug-design
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- protein
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pretty_name: SAbDab June
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size_categories:
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- 1K<n<10K
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- drug-design
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- protein
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- amino-acid
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pretty_name: SAbDab June 2025 - Curated Antibody-Antigen Sequences
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size_categories:
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- 1K<n<10K
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---
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# 🦋 peleke-1 Training Data | SAbDab Antibody-Antigen Complex Sequences
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A curated subset of [SAbDab](https://opig.stats.ox.ac.uk/webapps/sabdab-sabpred/sabdab) from June 2025 that includes antibody-antigen pairs of sequences.
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## Columns:
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| **Column Name** | **Description** | **Example** |
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|:------------------------:|:----------------------------------------------------------------------:|:--------------------------------:|
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| pdb_id | The PDB ID on Protein Data Bank | 8xa4 |
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| h_chain_id | The chain ID of the antibody's heavy chain | C |
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| l_chain_id | The chain ID of the antibody's light chain | D |
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| antigen_ids | A \|-delimited list of chain IDs of the antigen chain(s) | A\|B |
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| h_chain_seq | The heavy chain amino acid sequence | QLQLQESGPG… |
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| l_chain_seq | The light chain amino acid sequence | EIVLTQSPGT… |
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| antigen_seqs | The antigen sequence(s), \|-delimited | SCNGL...\|SCNGL… |
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| antibody_seqs | The heavy and light chain sequences, \|-delimited | QLQLQ...\|EIVLT… |
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| h_chain_fv_seq | The heavy chain sequence, trimmed to the Fv portion | QLQLQESGPG… |
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| l_chain_fv_seq | The light chain sequence, trimmed to the Fv portion | EIVLTQSPGT… |
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| antibody_fv_seqs | The heavy and light chain Fv sequences, \|-delimited | QLQLQ...\|EIVLT… |
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| highlighted_epitope_seqs | The antigen sequence(s) with epitope residues encased in [ ] | ...WLI[D][Y]V[E][D][T]WGS… |
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| epitope_residues | The list of epitope residues, \|-delimited in a "chain: AA #" format | A:ARG 176\|A:ASP 146\|A:ASP 150… |
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