grn / mccalla /README.md
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Expression data used as input to the network inference algorithms.

Summary of data directory structure

  • expression_matrices/
    • normalized/ Outputs of the depth normalization and gene/cell filtering pipeline for each of the seven datasets.
    • imputed/ Imputed expression matrix using MAGIC after depth normalization and gene/cell filtering for each of the seven datasets.
    • benchmark/ The han_GSE107552 dataset includes an extra directory containing subsamples of the normalized matrix after depth normalization and gene/cell filtering used in runtime benchmarking.