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- ---
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- license: mit
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- ---
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-
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- # Snuffy
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-
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- Snuffy is a state-of-the-art framework for whole-slide image (WSI) classification, introduced in the
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- paper [Snuffy: Efficient Whole Slide Image Classifier](https://huggingface.co/papers/2408.08258) by Hossein Jafarinia et al. from Sharif University of
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- Technology. Tested on the TCGA Lung Cancer and CAMELYON16 datasets, it consists of two main components:
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-
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- 1. **Self-Supervised Continual Pre-Training with PEFT**: Uses Parameter Efficient Fine Tuning (PEFT) with AdaptFormer
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- for effective training in the pathology domain.
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- 2. **Snuffy MIL-Pooling Architecture**: A novel pooling architecture designed for sparse transformers, tailored to the
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- complexity of cancer biology and tissue microenvironments.
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-
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- Snuffy addresses the challenge of balancing computational power and performance in WSI classification, offering two
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- versions:
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-
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- - **Efficient Snuffy**: Pre-trained on natural images and fine-tuned with PEFT on WSIs.
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- - **Exhaustive Snuffy**: Trained entirely from scratch on WSIs.
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-
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- Both versions use the Snuffy MIL-pooling architecture.
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-
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- ## Usage
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-
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- The code and documentation for Snuffy is available at: https://github.com/jafarinia/snuffy
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- This repository includes weights for the embedder, embeddings, and aggregator models as described in the paper.
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-
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- Available models include:
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-
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- 1. **Snuffy SimCLR from scratch** (Aggregator provided here)
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- 2. **Snuffy DINO from scratch** (All components provided here)
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- 3. **Snuffy DINO with Adapter** (All components provided here)
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- 4. **Snuffy MAE with Adapter** (All components provided here)
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-
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- ## BibTeX entry and citation info
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-
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- ```bibtex
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- @misc{jafarinia2024snuffyefficientslideimage,
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- title={Snuffy: Efficient Whole Slide Image Classifier},
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- author={Hossein Jafarinia and Alireza Alipanah and Danial Hamdi and Saeed Razavi and Nahal Mirzaie and Mohammad Hossein Rohban},
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- year={2024},
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- eprint={2408.08258},
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- archivePrefix={arXiv},
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- primaryClass={cs.CV},
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- url={https://arxiv.org/abs/2408.08258},
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- }
 
 
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  ```
 
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+ ---
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+ license: mit
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+ ---
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+
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+ # Snuffy
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+
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+ Snuffy is a state-of-the-art framework for whole-slide image (WSI) classification, introduced in the
8
+ paper [Snuffy: Efficient Whole Slide Image Classifier](https://huggingface.co/papers/2408.08258) by Hossein Jafarinia et al. from Sharif University of
9
+ Technology. Tested on the TCGA Lung Cancer and CAMELYON16 datasets, it consists of two main components:
10
+
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+ 1. **Self-Supervised Continual Pre-Training with PEFT**: Uses Parameter Efficient Fine Tuning (PEFT) with AdaptFormer
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+ for effective training in the pathology domain.
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+ 2. **Snuffy MIL-Pooling Architecture**: A novel pooling architecture designed for sparse transformers, tailored to the
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+ complexity of cancer biology and tissue microenvironments.
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+
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+ Snuffy addresses the challenge of balancing computational power and performance in WSI classification, offering two
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+ versions:
18
+
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+ - **Efficient Snuffy**: Pre-trained on natural images and fine-tuned with PEFT on WSIs.
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+ - **Exhaustive Snuffy**: Trained entirely from scratch on WSIs.
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+
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+ Both versions use the Snuffy MIL-pooling architecture.
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+
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+ ## Usage
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+
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+ The code and documentation for Snuffy is available at: https://github.com/jafarinia/snuffy
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+ This repository includes weights for the embedder, embeddings, and aggregator models as described in the paper.
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+
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+ Available models include:
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+
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+ 1. **Snuffy SimCLR from scratch** (Aggregator provided here)
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+ 2. **Snuffy DINO from scratch** (All components provided here)
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+ 3. **Snuffy DINO with Adapter** (All components provided here)
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+ 4. **Snuffy MAE with Adapter** (All components provided here)
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+
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+ ## BibTeX entry and citation info
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+
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+ [Paper page](https://huggingface.co/papers/2408.08258)
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+
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+ ```bibtex
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+ @misc{jafarinia2024snuffyefficientslideimage,
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+ title={Snuffy: Efficient Whole Slide Image Classifier},
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+ author={Hossein Jafarinia and Alireza Alipanah and Danial Hamdi and Saeed Razavi and Nahal Mirzaie and Mohammad Hossein Rohban},
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+ year={2024},
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+ eprint={2408.08258},
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+ archivePrefix={arXiv},
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+ primaryClass={cs.CV},
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+ url={https://arxiv.org/abs/2408.08258},
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+ }
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  ```