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AmelieSchreiber 's Collections
ESMBind (ESMB) for Protein Binding Sites
QBind: QLoRA for ESM-2 Binding Sites Prediction
ESM-PTM: ESM-2 for Predicting PTM
ESM-Interact
Biomedical
LLMs

ESM-Interact

updated Mar 29, 2024

ESM-2 models finetuned for generating peptide binders and predicting protein-protein interactions using MLM capabilities. None of the models work well

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  • AmelieSchreiber/PepMLM_v0

    Updated Nov 22, 2023

    Note This is based on the PepMLM training setup, which can be found here: https://huggingface.co/ChatterjeeLab/PepMLM-650M As well as here: https://github.com/programmablebio/pepmlm ESM-2 using the MLM objective is not well suited for generating peptide binders though, nor is it well suited for predicting PPIs. Use these models with caution.


  • AmelieSchreiber/esm_interact

    Fill-Mask • Updated Nov 22, 2023 • 11 • 3

  • AmelieSchreiber/esm_mlmppi_ph50

    Fill-Mask • Updated Dec 14, 2023 • 5

  • AmelieSchreiber/esm_mlmppi_ph50_v3

    Fill-Mask • Updated Dec 16, 2023 • 3

  • AmelieSchreiber/pha_clustered_protein_complexes

    Viewer • Updated Dec 16, 2023 • 10k • 18

  • AmelieSchreiber/pha_clustered_protein_complexes_30K

    Viewer • Updated Dec 17, 2023 • 30k • 31

  • AmelieSchreiber/pha_clustered_protein_complexes_40K

    Viewer • Updated Dec 19, 2023 • 40k • 19
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