Christina Theodoris

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updated a model 12 days ago

ctheodoris/Geneformer

Fill-Mask • 0.3B • Updated 12 days ago • 802 • • 244

New activity in ctheodoris/Geneformer 12 days ago

MTL and insilico perturbation

5

#549 opened 13 days ago by

ZYSK-huggingface

New activity in ctheodoris/Geneformer 13 days ago

label of dataset and prediction label mapping when using MTL

2

#548 opened 14 days ago by

ZYSK-huggingface

PrecollatorForGeneAndCellClassification has no attribute save_pretrained

8

#528 opened 2 months ago by

zzbb2266

New activity in ctheodoris/Geneformer 14 days ago

Having trouble with the pre-training process for the v1 and v2 versions of Geneformer.

4

#546 opened 15 days ago by

Haorano

some issues about input data and cell type annotation

1

#545 opened 15 days ago by

ZYSK-huggingface

New activity in ctheodoris/Geneformer 15 days ago

questions on MTL fine-tuning and insilico

2

#547 opened 15 days ago by

ZYSK-huggingface

New activity in ctheodoris/Geneformer 17 days ago

Having trouble applying geneformer on my data

1

#544 opened 17 days ago by

tomererez

New activity in ctheodoris/Geneformer 19 days ago

Add example notebook for distributed multi-task cell classification

#543 opened 19 days ago by

madhavanvvs

New activity in ctheodoris/Geneformer 20 days ago

BertForSequenceClassification.forward() got an unexpected keyword argument 'length'

3

#540 opened 23 days ago by

tusharagashe

New activity in ctheodoris/Geneformer 21 days ago

...

1

#542 opened 21 days ago by

vasudev1717

New activity in ctheodoris/Geneformer 23 days ago

fix AssertionError: First token is not <cls> token value in extract_and_plot_cell_embeddings.ipynb

2

#541 opened 23 days ago by

jackkuo

New activity in ctheodoris/Geneformer 26 days ago

fix TypeError: TrainingArguments.__init__() got an unexpected keyword argument 'evaluation_strategy'

👍 1

1

#539 opened 26 days ago by

jackkuo

New activity in ctheodoris/Geneformer 28 days ago

add fallback task_type for LoraConfig to support different PEFT versions

#538 opened 28 days ago by

madhavanvvs

New activity in ctheodoris/Geneformer about 1 month ago

best setting of num_train_epochs

1

#536 opened about 1 month ago by

ZYSK-huggingface

Question about Geneformer Perturbation and Extended Data Fig. 2C/2E

5

#534 opened about 2 months ago by

eastmancodes

New activity in ctheodoris/Geneformer about 2 months ago

error running the notebook: extract_and_plot_cell_embeddings

2

#535 opened about 2 months ago by

tomererez

ERROR with AdamW

2

#511 opened 3 months ago by

DAARNIE

Classifier data type error

1

#527 opened 2 months ago by

yihan1119

TypeError: TrainingArguments.__init__() got an unexpected keyword argument 'evaluation_strategy' in cell_classification

1

#531 opened about 2 months ago by

zhang0730