Christina Theodoris
ctheodoris
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Recent Activity
updated
a model
12 days ago
ctheodoris/Geneformer
new activity
12 days ago
ctheodoris/Geneformer:MTL and insilico perturbation
new activity
13 days ago
ctheodoris/Geneformer:label of dataset and prediction label mapping when using MTL
Organizations
MTL and insilico perturbation
5
#549 opened 13 days ago
by
ZYSK-huggingface
label of dataset and prediction label mapping when using MTL
2
#548 opened 14 days ago
by
ZYSK-huggingface
PrecollatorForGeneAndCellClassification has no attribute save_pretrained
8
#528 opened 2 months ago
by
zzbb2266
Having trouble with the pre-training process for the v1 and v2 versions of Geneformer.
4
#546 opened 15 days ago
by
Haorano
some issues about input data and cell type annotation
1
#545 opened 15 days ago
by
ZYSK-huggingface
questions on MTL fine-tuning and insilico
2
#547 opened 15 days ago
by
ZYSK-huggingface
Having trouble applying geneformer on my data
1
#544 opened 17 days ago
by
tomererez
Add example notebook for distributed multi-task cell classification
#543 opened 19 days ago
by
madhavanvvs
BertForSequenceClassification.forward() got an unexpected keyword argument 'length'
3
#540 opened 23 days ago
by
tusharagashe
...
1
#542 opened 21 days ago
by
vasudev1717
fix AssertionError: First token is not <cls> token value in extract_and_plot_cell_embeddings.ipynb
2
#541 opened 23 days ago
by
jackkuo
add fallback task_type for LoraConfig to support different PEFT versions
#538 opened 28 days ago
by
madhavanvvs
best setting of num_train_epochs
1
#536 opened about 1 month ago
by
ZYSK-huggingface
Question about Geneformer Perturbation and Extended Data Fig. 2C/2E
5
#534 opened about 2 months ago
by
eastmancodes
error running the notebook: extract_and_plot_cell_embeddings
2
#535 opened about 2 months ago
by
tomererez
ERROR with AdamW
2
#511 opened 3 months ago
by
DAARNIE
Classifier data type error
1
#527 opened 2 months ago
by
yihan1119
TypeError: TrainingArguments.__init__() got an unexpected keyword argument 'evaluation_strategy' in cell_classification
1
#531 opened about 2 months ago
by
zhang0730
Error in using the trainer.predict getting a tensor mismatch error when passing a dataset to the trainer.predict
4
#533 opened about 2 months ago
by
GalenP