README.md

metadata

license: apache-2.0
tags:
  - LucaOne
  - Biological Foundation Model
  - Unified Nucleic Acid and Protein Language Model
  - Biology
  - AI4Science
  - AI4Biology
  - Bio
language:
  - en

LucaGPLM

LucaGPLM - The LUCA general purpose language model.

Installation

You can install the package from source using pip:

pip install tokenizers==0.19.1
pip install transformers==4.41.2
pip install lucagplm

Usage

from lucagplm import LucaGPLMModel, LucaGPLMTokenizer

# Load model
model = LucaGPLMModel.from_pretrained("LucaGroup/LucaOne-default-step17.6M")
tokenizer = LucaGPLMTokenizer.from_pretrained("LucaGroup/LucaOne-default-step17.6M")

# Example usage
seq = "ATCG"
inputs = tokenizer(seq, seq_type="gene",return_tensors="pt")
outputs = model(**inputs)

seq = "NSQTA"
inputs = tokenizer(seq, seq_type="prot",return_tensors="pt")
outputs = model(**inputs)

print(outputs.last_hidden_state.shape)