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--- |
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license: apache-2.0 |
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tags: |
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- LucaOne |
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- Biological Foundation Model |
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- Unified Nucleic Acid and Protein Language Model |
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- Biology |
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- AI4Science |
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- AI4Biology |
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- Bio |
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language: |
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- en |
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--- |
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# LucaGPLM |
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LucaGPLM - The LUCA general purpose language model. |
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## Installation |
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You can install the package from source using pip: |
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```bash |
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pip install tokenizers==0.19.1 |
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pip install transformers==4.41.2 |
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pip install lucagplm |
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``` |
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## Usage |
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```python |
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from lucagplm import LucaGPLMModel, LucaGPLMTokenizer |
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# Load model |
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model = LucaGPLMModel.from_pretrained("LucaGroup/LucaOne-default-step17.6M") |
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tokenizer = LucaGPLMTokenizer.from_pretrained("LucaGroup/LucaOne-default-step17.6M") |
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# Example usage |
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seq = "ATCG" |
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inputs = tokenizer(seq, seq_type="gene",return_tensors="pt") |
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outputs = model(**inputs) |
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seq = "NSQTA" |
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inputs = tokenizer(seq, seq_type="prot",return_tensors="pt") |
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outputs = model(**inputs) |
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print(outputs.last_hidden_state.shape) |
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``` |
